mRNA_3954 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160987
Unique NamemRNA_3954
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|160987 vs. uniprot
Match: A0A836CKU2_9STRA (IQ calmodulin-binding motif family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU2_9STRA)

HSP 1 Score: 198 bits (504), Expect = 2.510e-64
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 LAAPLVGAAERLNVLLRVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRFLRAVPSHQHLAVAAAKQLVGIAC 309
            LAAPLVGAAERLNVLLRVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRFLRAVPSHQHLAVAAAKQLVGIAC
Sbjct:    1 LAAPLVGAAERLNVLLRVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRFLRAVPSHQHLAVAAAKQLVGIAC 103
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BLAST of jgi.p|Trimin1|160987 vs. uniprot
Match: A0A836CKY2_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY2_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.390e-57
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 1 
Query:    1 LAAPLVGAAERLNVLLRVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRFLRAVPSHQHLAVAAAKQLVGIAC 309
            LAAPLVGAAERL+VLL VKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRFLRA PSHQHLAVAA+KQLVGIAC
Sbjct:  302 LAAPLVGAAERLDVLLHVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRFLRAPPSHQHLAVAASKQLVGIAC 404
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BLAST of jgi.p|Trimin1|160987 vs. uniprot
Match: A0A7S3XKM5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKM5_HETAK)

HSP 1 Score: 114 bits (284), Expect = 5.560e-29
Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 LAAPLVGAAERLNVLLRVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRFLRAVP 255
            L APL+G  ERL+VLL VKW V+ F+C LTR++VEL+DREADLL+RGR  +++ GLR R   LFLRF+ETP+FNPEA+RFL+  P
Sbjct:  122 LTAPLLGVDERLDVLLHVKWTVKEFDCPLTRDIVELVDREADLLNRGRGEKALEGLRRRVANLFLRFVETPEFNPEAARFLKIPP 206
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BLAST of jgi.p|Trimin1|160987 vs. uniprot
Match: A0A7S2UXW3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXW3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.650e-28
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:   13 LVGAAERLNVLLRVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRFLR 246
            LV   ERL++LL VKW V+ FEC LTR++VEL+DREADLL+RGR+ +S+ GLR R   LFLRFIETP+FNPEA+RFL+
Sbjct:   57 LVSTDERLDILLHVKWTVKEFECPLTRDIVELIDREADLLNRGRSEKSLEGLRQRITNLFLRFIETPEFNPEATRFLK 134
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BLAST of jgi.p|Trimin1|160987 vs. uniprot
Match: D8LCF8_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF8_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 8.160e-27
Identity = 58/101 (57.43%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    1 LAAPLVGAAERLNVLLRVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRFLRAVPSHQHLAVAAAKQLVGI 303
            L APL+   ERL+VLL +KW V  F+CRLTR++ EL+DREADLLSRGR   S+  LR R   LFLRF ETPDFNPEASRF+R  P +  L       L G+
Sbjct:  289 LEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMVGLTGV 389
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BLAST of jgi.p|Trimin1|160987 vs. uniprot
Match: G0QPT3_ICHMG (Iq motif ubiquitin domain protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QPT3_ICHMG)

HSP 1 Score: 103 bits (257), Expect = 2.480e-26
Identity = 46/71 (64.79%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:   28 ERLNVLLRVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRF 240
            ERL++LL  KW V+ +EC +TRE+VEL+DREAD+L+RGR   S+ GLR+R C LFL+FIETP+FNPEA+RF
Sbjct:   44 ERLDILLNTKWTVKEWECNITREIVELIDREADMLNRGRPENSLEGLRIRLCNLFLQFIETPEFNPEAARF 114
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BLAST of jgi.p|Trimin1|160987 vs. uniprot
Match: A0A7S0PVG3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PVG3_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 2.730e-26
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:   10 PLVGAAERLNVLLRVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRF 240
            PL+   ERL+VLL VKW V+ F+C LTR++VEL+DREAD+L+RGR+  S+ GLR R   LFL+F+ETP+FNPEA+RF
Sbjct:   72 PLLSVDERLDVLLHVKWTVKEFDCNLTRDIVELIDREADMLNRGRSDSSLGGLRKRLANLFLQFVETPEFNPEAARF 148
[Close]
BLAST of jgi.p|Trimin1|160987 vs. uniprot
Match: D8LFI2_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI2_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.750e-26
Identity = 58/101 (57.43%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    1 LAAPLVGAAERLNVLLRVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRFLRAVPSHQHLAVAAAKQLVGI 303
            L APL+   ERL+VLL +KW V  F+CRLTR++ EL+DREADLLSRGR   S+  LR R   LFLRF ETPDFNPEASRF+R  P +  L       L G+
Sbjct:  440 LEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMVGLTGV 540
[Close]
BLAST of jgi.p|Trimin1|160987 vs. uniprot
Match: R1F5T1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F5T1_EMIHU)

HSP 1 Score: 100 bits (250), Expect = 2.700e-25
Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:   16 VGAAERLNVLLRVKWAVRGFECRLTRELVELLDREA---DLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRFLRAVPSHQHLA 273
            +G  ERL+VLL +KWAV  F+C LTRE+VEL+DREA   DLL+RGR   S++GLR R   LFL F+ETP++NPEA+RF R  P   H+A
Sbjct:   40 LGVDERLDVLLHIKWAVTEFKCGLTREMVELIDREATLADLLNRGRTEASLSGLRKRLGNLFLTFLETPEYNPEAARFKRGPPKVCHVA 128
[Close]
BLAST of jgi.p|Trimin1|160987 vs. uniprot
Match: A0A7S3FA20_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FA20_9EUKA)

HSP 1 Score: 107 bits (266), Expect = 5.270e-25
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:   10 PLVGAAERLNVLLRVKWAVRGFECRLTRELVELLDREADLLSRGRAARSMAGLRLRACGLFLRFIETPDFNPEASRF 240
            PL+   ERL+VLL VKW V+ F+C LTR++VEL+DREAD+L+RGRA  S+ GLR RA  LFL+FIETP+FNPEA RF
Sbjct:  399 PLLTVDERLDVLLHVKWTVKEFDCNLTRDIVELIDREADMLNRGRAESSLIGLRKRAANLFLQFIETPEFNPEAGRF 475
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160987 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKU2_9STRA2.510e-64100.00IQ calmodulin-binding motif family protein n=1 Tax... [more]
A0A836CKY2_9STRA1.390e-5796.12Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A7S3XKM5_HETAK5.560e-2963.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UXW3_9STRA5.650e-2866.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LCF8_ECTSI8.160e-2757.43Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
G0QPT3_ICHMG2.480e-2664.79Iq motif ubiquitin domain protein n=1 Tax=Ichthyop... [more]
A0A7S0PVG3_9EUKA2.730e-2662.34Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
D8LFI2_ECTSI2.750e-2657.43MFS domain-containing protein n=2 Tax=Ectocarpus s... [more]
R1F5T1_EMIHU2.700e-2558.43Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S3FA20_9EUKA5.270e-2566.23Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_15contigContig_15:917629..917940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160987|e_gw1.15.136.1
GOsGO:0001669,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008150,GO:0009987,GO:0012505,GO:0016043,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030141,GO:0031410,GO:0031514,GO:0031982,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0097223,GO:0097708,GO:0099503,GO:0120025,GO:0120031,GO:0120036
Preferred nameIQUB
Descriptionsmoothened signaling pathway
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28JBT@1|root,2QRQT@2759|Eukaryota
Evalue1.34e-27
Seed ortholog2880.D8LCF8
Hectar predicted targeting categoryother localisation
TranscriptId161309
TrackFilteredModels1
ProteinId160987
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160987gene_3954Tribonema minus UTEX_B_3156 geneContig_15 917629..917940 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3954_1exon_3954_1Tribonema minus UTEX_B_3156 exonContig_15 917629..917940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3954CDS_3954Tribonema minus UTEX_B_3156 CDSContig_15 917629..917940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160987Trimin1|160987|e_gw1.15.136.1Tribonema minus UTEX_B_3156 polypeptideContig_15 917629..917940 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3954 ID=mRNA_3954|Name=jgi.p|Trimin1|160987|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=312bp|location=Sequence derived from alignment at Contig_15:917629..917940- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCGCCGCGCCGCTCGTCGGCGCCGCGGAGCGCCTCAACGTGCTGCTGCG
CGTCAAGTGGGCGGTGCGCGGCTTCGAGTGCCGCCTCACGCGCGAGCTCG
TGGAGCTGCTGGACCGCGAGGCCGATCTGCTGAGCCGCGGGCGCGCGGCG
CGCTCCATGGCGGGCCTGCGGCTGCGCGCGTGCGGCCTGTTCCTGCGCTT
CATCGAGACGCCGGACTTCAACCCGGAGGCGTCGCGCTTCCTGCGCGCGG
TGCCGTCGCACCAGCACCTCGCGGTGGCGGCGGCCAAGCAGCTGGTGGGC
ATCGCGTGCTGA
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protein sequence of jgi.p|Trimin1|160987

>Trimin1|160987|e_gw1.15.136.1 ID=Trimin1|160987|e_gw1.15.136.1|Name=jgi.p|Trimin1|160987|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=104bp
LAAPLVGAAERLNVLLRVKWAVRGFECRLTRELVELLDREADLLSRGRAA
RSMAGLRLRACGLFLRFIETPDFNPEASRFLRAVPSHQHLAVAAAKQLVG
IAC*
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mRNA from alignment at Contig_15:917629..917940-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3954 ID=mRNA_3954|Name=jgi.p|Trimin1|160987|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=312bp|location=Sequence derived from alignment at Contig_15:917629..917940- (Tribonema minus UTEX_B_3156 )
CTCGCCGCGCCGCTCGTCGGCGCCGCGGAGCGCCTCAACGTGCTGCTGCG
CGTCAAGTGGGCGGTGCGCGGCTTCGAGTGCCGCCTCACGCGCGAGCTCG
TGGAGCTGCTGGACCGCGAGGCCGATCTGCTGAGCCGCGGGCGCGCGGCG
CGCTCCATGGCGGGCCTGCGGCTGCGCGCGTGCGGCCTGTTCCTGCGCTT
CATCGAGACGCCGGACTTCAACCCGGAGGCGTCGCGCTTCCTGCGCGCGG
TGCCGTCGCACCAGCACCTCGCGGTGGCGGCGGCCAAGCAGCTGGTGGGC
ATCGCGTGCTGA
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Coding sequence (CDS) from alignment at Contig_15:917629..917940-

>mRNA_3954 ID=mRNA_3954|Name=jgi.p|Trimin1|160987|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=312bp|location=Sequence derived from alignment at Contig_15:917629..917940- (Tribonema minus UTEX_B_3156 )
CTCGCCGCGCCGCTCGTCGGCGCCGCGGAGCGCCTCAACGTGCTGCTGCG
CGTCAAGTGGGCGGTGCGCGGCTTCGAGTGCCGCCTCACGCGCGAGCTCG
TGGAGCTGCTGGACCGCGAGGCCGATCTGCTGAGCCGCGGGCGCGCGGCG
CGCTCCATGGCGGGCCTGCGGCTGCGCGCGTGCGGCCTGTTCCTGCGCTT
CATCGAGACGCCGGACTTCAACCCGGAGGCGTCGCGCTTCCTGCGCGCGG
TGCCGTCGCACCAGCACCTCGCGGTGGCGGCGGCCAAGCAGCTGGTGGGC
ATCGCGTGCTGA
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