mRNA_3933 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135081
Unique NamemRNA_3933
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|135081 vs. uniprot
Match: A0A835ZET4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET4_9STRA)

HSP 1 Score: 595 bits (1533), Expect = 1.140e-214
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 1 
Query:    1 FDSETPPLVKLSVSATLLPVLLAAKGREHVTAEDIIITTPGSTYAGIDNMAPLQDERGFDVFLRPGELTVKTKFTSPSIDLMMSDAMGRPRSLHIVMVNSRQYTTESNMDLANRSAKKYPHAVVMVLLGKGIGYKLPGHAWVMVTEQERVQTIGEVLEQIDQTHLEAPLVVYCYRQYMRLYSIRSSRRVGTHLTLSVTNALSISIVVQAFGRVCGEQLEVLRRNGFVTADGTPRVTVLTHAHDYDSVSAHPHLMAELVAHLQRGANLKEALCAAYSACANIRYAQPKTIGPKKAAPLVDANF 906
            FDSETPPLVKLSVSATLLPVLLAAKGREHVTAEDIIITTPGSTYAGIDNMAPLQDERGFDVFLRPGELTVKTKFTSPSIDLMMSDAMGRPRSLHIVMVNSRQYTTESNMDLANRSAKKYPHAVVMVLLGKGIGYKLPGHAWVMVTEQERVQTIGEVLEQIDQTHLEAPLVVYCYRQYMRLYSIRSSRRVGTHLTLSVTNALSISIVVQAFGRVCGEQLEVLRRNGFVTADGTPRVTVLTHAHDYDSVSAHPHLMAELVAHLQRGANLKEALCAAYSACANIRYAQPKTIGPKKAAPLVDANF
Sbjct:    1 FDSETPPLVKLSVSATLLPVLLAAKGREHVTAEDIIITTPGSTYAGIDNMAPLQDERGFDVFLRPGELTVKTKFTSPSIDLMMSDAMGRPRSLHIVMVNSRQYTTESNMDLANRSAKKYPHAVVMVLLGKGIGYKLPGHAWVMVTEQERVQTIGEVLEQIDQTHLEAPLVVYCYRQYMRLYSIRSSRRVGTHLTLSVTNALSISIVVQAFGRVCGEQLEVLRRNGFVTADGTPRVTVLTHAHDYDSVSAHPHLMAELVAHLQRGANLKEALCAAYSACANIRYAQPKTIGPKKAAPLVDANF 302
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BLAST of jgi.p|Trimin1|135081 vs. uniprot
Match: L1JVC6_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JVC6_GUITC)

HSP 1 Score: 140 bits (352), Expect = 1.610e-33
Identity = 104/315 (33.02%), Postives = 162/315 (51.43%), Query Frame = 1 
Query:   10 ETPPLVKLSVSATLLPVLLAAKGREH-VTAEDIIITTPGSTYAGIDNMAPLQDERGFDVFLRPGELTVKTKFTSPSIDLMMSDAMGRPRSLHIVMVNSRQYTTESNMDLANRSAKKYPHAVVMVLLGKGIGYKLPGH------------AWVMVTEQERVQTIGEVLEQID-QTHLEAPLVVYCYRQYMRLYSIRSSRRVGTHLTLSVTNALSISIVVQAFGRVCGEQLEVLRRNGFVTADGTPRVTVLTHAHDYDSVSAHPHLMAELVAHLQRGANLKEALC--AAYSACANIRYAQPKTIGPKKAAPLVDANF 906
            +  P+++ SVSATL+PV L  K ++  + ++ II T P  TY G+ +  PLQ + G + FL P +L     +++   D ++  A+ +P SL +V+ N R     +  +LA R    YP    ++++G+G  Y  P              A+V+     R   +  ++E ID    LE PLVV  Y Q +R  + RS+RRV TH+  ++  A+SI  +VQA GR   +  + L  NGF        VTVLT+  D+DS  A+P  +AE+   LQ G  + EA    A YS  AN+ + Q K IG +     ++ +F
Sbjct:  388 QVKPVLRWSVSATLIPVFLHLKDKKFGLDSDSIIYTQPDHTYVGVRDFKPLQID-GKNQFLMPKDLKPANLYSNHLTDEVIRQAVDKPCSLTLVITNPRVDAANNVFELARRIQNSYPRVAALIVVGRGRFYMPPPQPRLPEDSIAPPPAYVI-----RRMDVSALIEAIDGHVGLETPLVVLGYSQMIRGDTFRSNRRVPTHIICALGRAMSIEKMVQAMGRASYQDSK-LEDNGF------QHVTVLTYPQDFDSAQAYPQWLAEMQQKLQEGTGISEATSRLATYSDRANVIFRQNKPIGQRNDNLRLETSF 689
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135081 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZET4_9STRA1.140e-214100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
L1JVC6_GUITC1.610e-3333.02Uncharacterized protein n=2 Tax=Guillardia theta (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_15contigContig_15:745165..747800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135081|gw1.15.85.1
Max annot lvl55529.EKX52160|-
EggNOG OGs2EN8N@1|root,2SRR9@2759|Eukaryota
Evalue2.65e-34
Seed ortholog55529.EKX52160
Hectar predicted targeting categoryother localisation
TranscriptId135403
TrackFilteredModels1
ProteinId135081
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135081gene_3933Tribonema minus UTEX_B_3156 geneContig_15 745165..747800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135081Trimin1|135081|gw1.15.85.1Tribonema minus UTEX_B_3156 polypeptideContig_15 745165..747800 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3933_3exon_3933_3Tribonema minus UTEX_B_3156 exonContig_15 745165..745620 -
exon_3933_2exon_3933_2Tribonema minus UTEX_B_3156 exonContig_15 745666..745717 -
exon_3933_1exon_3933_1Tribonema minus UTEX_B_3156 exonContig_15 747403..747800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3933CDS_3933Tribonema minus UTEX_B_3156 CDSContig_15 747403..747800 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3933 ID=mRNA_3933|Name=jgi.p|Trimin1|135081|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=906bp|location=Sequence derived from alignment at Contig_15:745165..747800- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCGACAGCGAGACACCGCCGCTCGTCAAGCTCTCCGTCTCTGCGACGCT
GCTGCCAGTGCTGCTGGCCGCAAAGGGCCGTGAGCACGTCACCGCCGAGG
ACATCATCATCACCACGCCTGGCAGCACGTATGCAGGCATTGACAACATG
GCGCCGCTGCAGGACGAGCGTGGCTTTGACGTGTTCTTGCGGCCGGGCGA
GCTGACGGTCAAGACGAAGTTCACATCCCCCAGCATTGACCTCATGATGA
GCGATGCCATGGGGAGGCCGCGCTCGCTGCACATCGTCATGGTCAACAGC
CGCCAGTACACGACAGAGAGCAACATGGACCTGGCCAACCGCTCCGCAAA
GAAGTACCCGCACGCCGTGGTCATGGTCTTGCTGGGCAAGGGCATCGGGT
ACAAACTGCCCGGGCATGCCTGGGTCATGGTGACGGAGCAGGAGCGCGTA
CAGACCATCGGGGAGGTGCTGGAGCAAATCGACCAGACGCACCTGGAGGC
GCCGCTCGTTGTGTACTGCTACCGCCAGTACATGCGCCTCTACAGCATCC
GCAGCAGCCGGCGCGTCGGCACCCACCTCACGCTCTCCGTCACCAACGCT
CTGTCGATCTCCATTGTCGTGCAAGCCTTCGGGCGCGTGTGCGGCGAGCA
GCTCGAGGTGCTGCGCCGCAACGGCTTTGTGACGGCGGACGGCACGCCGC
GCGTGACAGTGCTCACCCACGCGCACGACTACGACAGCGTCTCCGCGCAC
CCGCACCTCATGGCGGAGCTCGTGGCGCACCTGCAGCGTGGCGCCAACCT
GAAGGAGGCGCTGTGCGCCGCCTACTCCGCGTGCGCCAACATCCGCTACG
CGCAGCCCAAGACCATCGGCCCCAAGAAGGCAGCGCCGCTCGTTGACGCC
AACTTC
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protein sequence of jgi.p|Trimin1|135081

>Trimin1|135081|gw1.15.85.1 ID=Trimin1|135081|gw1.15.85.1|Name=jgi.p|Trimin1|135081|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=302bp
FDSETPPLVKLSVSATLLPVLLAAKGREHVTAEDIIITTPGSTYAGIDNM
APLQDERGFDVFLRPGELTVKTKFTSPSIDLMMSDAMGRPRSLHIVMVNS
RQYTTESNMDLANRSAKKYPHAVVMVLLGKGIGYKLPGHAWVMVTEQERV
QTIGEVLEQIDQTHLEAPLVVYCYRQYMRLYSIRSSRRVGTHLTLSVTNA
LSISIVVQAFGRVCGEQLEVLRRNGFVTADGTPRVTVLTHAHDYDSVSAH
PHLMAELVAHLQRGANLKEALCAAYSACANIRYAQPKTIGPKKAAPLVDA
NF
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mRNA from alignment at Contig_15:745165..747800-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3933 ID=mRNA_3933|Name=jgi.p|Trimin1|135081|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2636bp|location=Sequence derived from alignment at Contig_15:745165..747800- (Tribonema minus UTEX_B_3156 )
TTCGACAGCGAGACACCGCCGCTCGTCAAGCTCTCCGTCTCTGCGACGCT
GCTGCCAGTGCTGCTGGCCGCAAAGGGCCGTGAGCACGTCACCGCCGAGG
ACATCATCATCACCACGCCTGGCAGCACGTATGCAGGCATTGACAACATG
GCGCCGCTGCAGGACGAGCGTGGCTTTGACGTGTTCTTGCGGCCGGGCGA
GCTGACGGTCAAGACGAAGTTCACATCCCCCAGCATTGACCTCATGATGA
GCGATGCCATGGGGAGGCCGCGCTCGCTGCACATCGTCATGGTCAACAGC
CGCCAGTACACGACAGAGAGCAACATGGACCTGGCCAACCGCTCCGCAAA
GAAGTACCCGCACGCCGTGGTCATGGTCTTGCTGGGCAAGGGCATCGGGT
GAGTGACCCAAAACGCTGCACATCAATGTACATTATACGTTCAAGACAGG
GGCAGCAGCCATGCATAATTGCAAACCTTGCTGCAAAGAAGCGAGGCTCA
GCAAGCTTGATGTAGGACAGAGCAACGACTGTGCTAGGCATGGATCAAGC
TTCTTCCGGGATTCCGCTTTCCTGGAAACAAGGATGATGCCATACAGTGC
AAGCGACCCTGTCAAAGCATTTGTGCCATACGTGAGTGATATGCATATCG
GACCTGCCAGTGGCCATGCTTTGTTCCTCTATATCCATCAGATTTCACTG
AAGGCTCCATTACAATCGGCCCTGTCAAGTCTAGATTTCCAAGCCTGCCA
GTCGGCAGCATGCGCTTGAAACTTGGTGTCGATGCTACTTTTCATCAAGG
CCTTGGGAGCAGATGGCTGCCGGGCAGACCTTGAAATTTAGTGCCACAGT
GCGCACTTCATAATTCACAGGCAATCATCTTGCAACCATATACTTATCTT
CCAATCATCAGTCATGAATAAGTATACCTTCTGATCATTACTCACGAGTA
ATTGCTTACTTGGTGGGTGATAGTTGCCATTACTCAGAACTATAAGCAAT
TCATCATGTGCTGCACATGAGGAAGCCCCGGGAATGCAGGACACGCAAGC
GTCCCCTGGAGCCTTTATAAATACCAGACCATAATGCGTACTTCAACAAG
TGTGTGTGTGTGCTTCTTTCACCCACCCGCAAAAATTATACATGTCAATA
CATAGAGCAAGTTAATAACTTGCTTTGTGTTCAGTGATTATTGCTGGCAA
CAATAAGGGTTGCCTGTTCTCATGTAATACACTCAGAGAACCTGGCATGG
GGGCGAAGCTGTTTGGTGTCAGTGAAACGGCGGCCTGGTGCTGCGACAGC
CTTACTTCTGAATCGTTGTTTGTGCACATGAATTATGTGAGACGCCATTT
TTTAGTATGCCATATGTGTGCACCATGGTAGCGGATCCTAGGATAAAATA
TGCAGTCTCAGCAAAGCATACATCAGACCTTTGGGGGGTGTGCACCAGTT
GATGCCTTCAGTCCCTGCCATCCTGTCAGTGACGTGGGCACTGGCAGAGG
GGGGTGCTTCTGGCCAAATAAGCTTCAAAGAAGATTTAGCATGCTGCAGT
CAAACACAAAATTCAAGCAGCCCTAGCTTGGTCAAGGCAGGTTACAAACT
CACTCTACAATTTCATTGTTTCGGCAGTGTTGGTACATGTTCAGCAGATT
GGCAGTATGAATTGAGTGTCGTGCACTCATGCCGGCAAGGGTGACATCAT
AGCTGCCTCCCCCAGCATTGTTGTCACCACCATACAATATTCTGCCTCGT
TTTATTTTTCAAGAGGCATTGTAGTCGTTGAGTAACTGATGGTCTGCTGT
CTTAGATGTATGCCTCATTCTCAAGCATTTTTATGATAAGTCTAATCTGT
CTTAGAAGTATGCCTCATTCTCAAGCATTTATATGATAAGTCTAATTTTG
TAATGAAGTGTATATGGTTGTGCAGTAGATATTGTGCAGGATCTTTGCAG
AGTGAAAACCTGAGTTGGTCACATATTTGTTCTGGTGCAACAACTCACAT
CGGTACCAAGATTATCATAGTGATGTGACTATCTAGTTGATCAGCATCTG
GCGGACCCATACCTCAACCTTAACCGCGCGCAGGTACAAACTGCCCGGGC
ATGCCTGGGTCATGGTGACGGAGCAGGAGCGCGTAGTAAACGCGGCGCGC
CGCCTTTCCAAGCTGCCTCTTCTGCCACAGCAGACCATCGGGGAGGTGCT
GGAGCAAATCGACCAGACGCACCTGGAGGCGCCGCTCGTTGTGTACTGCT
ACCGCCAGTACATGCGCCTCTACAGCATCCGCAGCAGCCGGCGCGTCGGC
ACCCACCTCACGCTCTCCGTCACCAACGCTCTGTCGATCTCCATTGTCGT
GCAAGCCTTCGGGCGCGTGTGCGGCGAGCAGCTCGAGGTGCTGCGCCGCA
ACGGCTTTGTGACGGCGGACGGCACGCCGCGCGTGACAGTGCTCACCCAC
GCGCACGACTACGACAGCGTCTCCGCGCACCCGCACCTCATGGCGGAGCT
CGTGGCGCACCTGCAGCGTGGCGCCAACCTGAAGGAGGCGCTGTGCGCCG
CCTACTCCGCGTGCGCCAACATCCGCTACGCGCAGCCCAAGACCATCGGC
CCCAAGAAGGCAGCGCCGCTCGTTGACGCCAACTTC
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Coding sequence (CDS) from alignment at Contig_15:745165..747800-

>mRNA_3933 ID=mRNA_3933|Name=jgi.p|Trimin1|135081|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=906bp|location=Sequence derived from alignment at Contig_15:745165..747800- (Tribonema minus UTEX_B_3156 )
TTCGACAGCGAGACACCGCCGCTCGTCAAGCTCTCCGTCTCTGCGACGCT
GCTGCCAGTGCTGCTGGCCGCAAAGGGCCGTGAGCACGTCACCGCCGAGG
ACATCATCATCACCACGCCTGGCAGCACGTATGCAGGCATTGACAACATG
GCGCCGCTGCAGGACGAGCGTGGCTTTGACGTGTTCTTGCGGCCGGGCGA
GCTGACGGTCAAGACGAAGTTCACATCCCCCAGCATTGACCTCATGATGA
GCGATGCCATGGGGAGGCCGCGCTCGCTGCACATCGTCATGGTCAACAGC
CGCCAGTACACGACAGAGAGCAACATGGACCTGGCCAACCGCTCCGCAAA
GAAGTACCCGCACGCCGTGGTCATGGTCTTGCTGGGCAAGGGCATCGGGT
ACAAACTGCCCGGGCATGCCTGGGTCATGGTGACGGAGCAGGAGCGCGTA
CAGACCATCGGGGAGGTGCTGGAGCAAATCGACCAGACGCACCTGGAGGC
GCCGCTCGTTGTGTACTGCTACCGCCAGTACATGCGCCTCTACAGCATCC
GCAGCAGCCGGCGCGTCGGCACCCACCTCACGCTCTCCGTCACCAACGCT
CTGTCGATCTCCATTGTCGTGCAAGCCTTCGGGCGCGTGTGCGGCGAGCA
GCTCGAGGTGCTGCGCCGCAACGGCTTTGTGACGGCGGACGGCACGCCGC
GCGTGACAGTGCTCACCCACGCGCACGACTACGACAGCGTCTCCGCGCAC
CCGCACCTCATGGCGGAGCTCGTGGCGCACCTGCAGCGTGGCGCCAACCT
GAAGGAGGCGCTGTGCGCCGCCTACTCCGCGTGCGCCAACATCCGCTACG
CGCAGCCCAAGACCATCGGCCCCAAGAAGGCAGCGCCGCTCGTTGACGCC
AACTTC
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