mRNA_3900 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160857
Unique NamemRNA_3900
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|160857 vs. uniprot
Match: A0A835Z9H1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9H1_9STRA)

HSP 1 Score: 267 bits (682), Expect = 8.910e-91
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 
Query:    1 QVAEDIAAALAYMHNHRQYTGVPVRIIHRDIKPGNVMFDKRGTAKLVDFSMAGVLEFGHDERPSMNETFDLTGDIGNCRFMAPEVARKEHYNEKADIYSFGLLLWEMITLQQPYMGLLRCGTPQW 375
            QVAEDIAAALAYMHNHRQYTGVPVRIIHRDIKPGNVMFDKRGTAKLVDFSMAGVLEFGHDERPSMNETFDLTGDIGNCRFMAPEVARKEHYNEKADIYSFGLLLWEMITLQQPYMGLLRCGTPQW
Sbjct:    1 QVAEDIAAALAYMHNHRQYTGVPVRIIHRDIKPGNVMFDKRGTAKLVDFSMAGVLEFGHDERPSMNETFDLTGDIGNCRFMAPEVARKEHYNEKADIYSFGLLLWEMITLQQPYMGLLRCGTPQW 125
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BLAST of jgi.p|Trimin1|160857 vs. uniprot
Match: A0A7R9ZP86_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZP86_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.070e-26
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 1 
Query:    4 VAEDIAAALAYMHNHRQYTGVPVRIIHRDIKPGNVMFDKRGTAKLVDFSMAGVLEFGHDERPSMNETFDLTGDIGNCRFMAPEVARKEHYNEKADIYSFGLLLWEMITLQQPYMG 348
            VA DIA AL ++H         + +I+RD+KP N+ FD RG  K+ DF +A  L+    ++   + TF LTGD G+ R+MAPEVA+ E+YNE AD++SF +LLW+M  L+ PY G
Sbjct:   50 VAYDIACALRFLHQ--------MDVIYRDLKPENIGFDVRGDVKIFDFGLAKELD---PQKRLEDGTFKLTGDTGSMRYMAPEVAKSENYNETADVFSFSILLWQMSELKTPYEG 153
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BLAST of jgi.p|Trimin1|160857 vs. uniprot
Match: A0A7S2LC32_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LC32_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.120e-25
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 1 
Query:    7 AEDIAAALAYMHNHRQYTGVP-VRIIHRDIKPGNVMFDKRGTAKLVDFSMAGVLEFGHDERPSMNETFDLTGDIGNCRFMAPEVARKEHYNEKADIYSFGLLLWEMITLQQPYMGLLR 357
            A  +A AL Y H       VP   ++HRD+KP N+ F   GT KL+DF +A V++   +  P  N+ + L+G+ G+ R+MAPEVA    YN KAD+YSFG++LWEM+  ++PY GL R
Sbjct:  167 ARSLADALGYCHGK----AVPGTLVLHRDVKPDNIGFTIDGTLKLIDFGLAKVVD---NATPDCNDVYSLSGETGSLRYMAPEVADNRPYNHKADVYSFGIILWEMLAYKKPYDGLNR 277
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BLAST of jgi.p|Trimin1|160857 vs. uniprot
Match: A0A7S1V100_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V100_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.810e-25
Identity = 50/123 (40.65%), Postives = 77/123 (62.60%), Query Frame = 1 
Query:    7 AEDIAAALAYMHNHRQYTGVPVRIIHRDIKPGNVMFDKRGTAKLVDFSMAGVLEFGHDERPSMNETFDLTGDIGNCRFMAPEVARKEHYNEKADIYSFGLLLWEMITLQQPYMGLLRCGTPQW 375
            A  +++AL Y+H H         I++RD+KP N+ FD RG  KL DF +A  L+    + P + + ++L+G+ G+ R+M+PEVA  E YN  ADIYSFGL+LW+  +L+ PY G+ R    ++
Sbjct:    1 AFSVSSALEYLHEHN--------IVYRDLKPDNIGFDIRGDVKLFDFGLAKELDDSL-KSPYLTDYYELSGNTGSLRYMSPEVALSEPYNLLADIYSFGLVLWQTCSLELPYEGMTRADHAEY 114
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BLAST of jgi.p|Trimin1|160857 vs. uniprot
Match: A0A7S2YTZ9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YTZ9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.950e-25
Identity = 55/118 (46.61%), Postives = 78/118 (66.10%), Query Frame = 1 
Query:    4 VAEDIAAALAYMHNHRQYTGVPVRIIHRDIKPGNVMFDKRGTAKLVDFSMAGVLEFGHDERPSMNETFDLTGDIGNCRFMAPEVARKEHYNEKADIYSFGLLLWEMITLQQPYMGLLR 357
            V+ D+AAAL+Y+HN+         +I+RD+KP N+ FD RG  K+ DF +A  L+     R    E ++L+G+ G+ R+MAPEVAR E YN  AD+YSFGLLLW++ +L  PY G+ R
Sbjct:  216 VSFDVAAALSYLHNNH--------VIYRDLKPDNIGFDIRGDVKIFDFGLAKELD--PSLRYGCTEFYELSGNTGSLRYMAPEVARSEPYNLTADVYSFGLLLWQVCSLDLPYDGMNR 323
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BLAST of jgi.p|Trimin1|160857 vs. uniprot
Match: A0A1Z5KSI0_FISSO (Protein kinase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSI0_FISSO)

HSP 1 Score: 107 bits (267), Expect = 3.230e-25
Identity = 56/115 (48.70%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:    1 QVAEDIAAALAYMHNHRQYTGVPVRIIHRDIKPGNVMFDKRGTAKLVDFSMAGVLEFGHDERPSMNETFD-LTGDIGNCRFMAPEVARKEHYNEKADIYSFGLLLWEMITLQQPY 342
            Q+A DIAAAL Y+H +R        II+RD+KP NV FD+ G  KL DF +A  L    D    ++ T D L+G +G  R+MAPEV RKE YN KAD++SF L+LWE++ L++P+
Sbjct:  221 QIAMDIAAALTYLHENR--------IIYRDLKPANVGFDENGVLKLFDFGLATQLAKDSD----LDSTHDHLSGKVGTTRYMAPEVLRKEPYNVKADVFSFSLVLWELLALEKPH 323
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BLAST of jgi.p|Trimin1|160857 vs. uniprot
Match: A0A7S1VNA0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VNA0_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.510e-25
Identity = 52/119 (43.70%), Postives = 74/119 (62.18%), Query Frame = 1 
Query:    1 QVAEDIAAALAYMHNHRQYTGVPVRIIHRDIKPGNVMFDKRGTAKLVDFSMAGVLEFGHDERPSMNETFDLTGDIGNCRFMAPEVARKEHYNEKADIYSFGLLLWEMITLQQPYMGLLR 357
            ++A +IAAALAY+H+ R        II+RD+KP NV  D  G  K+ DF +A  L     ++   N+T+ +TG  G+   MAPEV + E YNEKAD+YSF +LLW M+ L  PY+  ++
Sbjct:   33 RMASEIAAALAYLHSER--------IIYRDLKPDNVGLDLEGKCKIFDFGLARRLPSASQKK--RNDTYQMTGKSGSLILMAPEVFKGEPYNEKADVYSFAMLLWNMLALDLPYLDFIK 141
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BLAST of jgi.p|Trimin1|160857 vs. uniprot
Match: A0A6S9ARD2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9ARD2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.080e-25
Identity = 48/116 (41.38%), Postives = 77/116 (66.38%), Query Frame = 1 
Query:    4 VAEDIAAALAYMHNHRQYTGVPVRIIHRDIKPGNVMFDKRGTAKLVDFSMAGVLEFGHDERPSMNETFDLTGDIGNCRFMAPEVARKEHYNEKADIYSFGLLLWEMITLQQPYMGL 351
            VA D+++AL Y+H+        + I++RD+KP N+ FD RG  KL DF ++  +   H E    ++ + L+G+ G+ R+MAPEVA+++ YNE  D+YSFG+L+W+M  L+ P+ GL
Sbjct:   63 VAYDLSSALKYLHS--------LNILYRDLKPDNIGFDVRGDVKLFDFGLSREV---HPEDKMADDLYRLSGNTGSLRYMAPEVAKEQPYNETVDVYSFGILMWQMFALETPFSGL 167
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BLAST of jgi.p|Trimin1|160857 vs. uniprot
Match: A0A6T6GV67_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6GV67_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.510e-24
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 1 
Query:    4 VAEDIAAALAYMHNHRQYTGVPVRIIHRDIKPGNVMFDKRGTAKLVDFSMAGVLEFGHDERPSMNETFDLTGDIGNCRFMAPEVARKEHYNEKADIYSFGLLLWEMITLQQPYMG 348
            VA DIA AL ++H         + +I+RD+KP N+ FD RG  K+ DF +A  L+    ++   + TF LTGD G+ R+MAPEVA+ E+YNE AD++SF +LLW+M  L+ PY G
Sbjct:  219 VAYDIACALRFLHQ--------MDVIYRDLKPENIGFDVRGDVKIFDFGLAKELD---PQKRLEDGTFKLTGDTGSMRYMAPEVAKSENYNETADVFSFSILLWQMSELKTPYEG 322
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BLAST of jgi.p|Trimin1|160857 vs. uniprot
Match: A0A1Z5JDZ3_FISSO (Protein kinase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDZ3_FISSO)

HSP 1 Score: 105 bits (262), Expect = 3.500e-24
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:    4 VAEDIAAALAYMH-NHRQYTGVPVRIIHRDIKPGNVMFDKRGTAKLVDFSMAGVLEFGHDERPSMNETFDLTGDIGNCRFMAPEVARKEHYNEKADIYSFGLLLWEMITLQQPYMGLLR 357
            V+ DIAAAL+Y+H NH         +I+RD+KP NV FD RG  K+ DF +A  L+     R    E ++L+G+ G+ R+MAPEVAR E YN  AD+YSFGLLLW++ ++  PY G+ R
Sbjct:  219 VSFDIAAALSYLHANH---------VIYRDLKPDNVGFDIRGDVKIFDFGLAKELD--PTLRHGCTEFYELSGNTGSLRYMAPEVARCEPYNLTADVYSFGLLLWQVCSMDLPYDGMNR 326
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160857 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9H1_9STRA8.910e-91100.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7R9ZP86_9STRA9.070e-2646.09Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2LC32_9STRA1.120e-2544.92Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S1V100_9STRA1.810e-2540.65Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S2YTZ9_9STRA1.950e-2546.61Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1Z5KSI0_FISSO3.230e-2548.70Protein kinase domain-containing protein n=1 Tax=F... [more]
A0A7S1VNA0_9STRA3.510e-2543.70Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6S9ARD2_9STRA5.080e-2541.38Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A6T6GV67_9STRA1.510e-2446.09Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1Z5JDZ3_FISSO3.500e-2447.90Protein kinase domain-containing protein n=2 Tax=F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_15contigContig_15:425401..427721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160857|e_gw1.15.47.1
DescriptionSerine threonine protein kinase. Source PGD
COG categoryT
Max annot lvl121069|Pythiales
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota,1MCRP@121069|Pythiales
Evalue4.39e-25
Seed ortholog65071.PYU1_T007705
Hectar predicted targeting categoryother localisation
TranscriptId161179
TrackFilteredModels1
ProteinId160857
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160857gene_3900Tribonema minus UTEX_B_3156 geneContig_15 425401..427721 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3900_1exon_3900_1Tribonema minus UTEX_B_3156 exonContig_15 425401..425486 +
exon_3900_2exon_3900_2Tribonema minus UTEX_B_3156 exonContig_15 426170..426300 +
exon_3900_3exon_3900_3Tribonema minus UTEX_B_3156 exonContig_15 427561..427721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3900CDS_3900Tribonema minus UTEX_B_3156 CDSContig_15 425401..425486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160857Trimin1|160857|e_gw1.15.47.1Tribonema minus UTEX_B_3156 polypeptideContig_15 425401..427721 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3900 ID=mRNA_3900|Name=jgi.p|Trimin1|160857|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_15:425401..427721+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGTGGCGGAGGACATTGCTGCGGCCCTGGCATACATGCATAACCATCG
CCAGTACACTGGTGTACCAGTGCGTATCATACACAGGGACATTAAGCCTG
GCAATGTTATGTTTGACAAGCGTGGCACTGCAAAGCTGGTGGACTTCAGC
ATGGCTGGGGTGCTGGAGTTTGGACATGACGAGCGACCCAGCATGAATGA
GACTTTCGACCTCACAGGCGACATTGGCAACTGTAGGTTCATGGCACCTG
AGGTGGCACGGAAGGAGCACTACAACGAGAAGGCAGACATCTACTCATTT
GGCCTGCTGCTATGGGAGATGATAACACTTCAGCAGCCATACATGGGCTT
GCTCCGTTGTGGCACACCCCAATGGTGA
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protein sequence of jgi.p|Trimin1|160857

>Trimin1|160857|e_gw1.15.47.1 ID=Trimin1|160857|e_gw1.15.47.1|Name=jgi.p|Trimin1|160857|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
QVAEDIAAALAYMHNHRQYTGVPVRIIHRDIKPGNVMFDKRGTAKLVDFS
MAGVLEFGHDERPSMNETFDLTGDIGNCRFMAPEVARKEHYNEKADIYSF
GLLLWEMITLQQPYMGLLRCGTPQW*
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mRNA from alignment at Contig_15:425401..427721+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3900 ID=mRNA_3900|Name=jgi.p|Trimin1|160857|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2321bp|location=Sequence derived from alignment at Contig_15:425401..427721+ (Tribonema minus UTEX_B_3156 )
CAGGTGGCGGAGGACATTGCTGCGGCCCTGGCATACATGCATAACCATCG
CCAGTACACTGGTGTACCAGTGCGTATCATACACAGGTAAATGTGGTGCT
CAATAATGTGACAACAAATTATTGGTCGGTCGCACAAAGCCCACCATATG
TATGGTATGCTTTGTGTAACTGTTCACATATAGATGGAGCACTTTGTCTT
GTCATGTCGTCTCATTTGATATGTTTCACGGATAGAGCCGCTATCGTATG
TGCATGTCTGCAGTGATCAGAGTAGTACAGCAATATATTTTGTGGTGCGG
TTGTATATATGTGCAGTGTCTAAGATCTTGGCCATAGCTTGTTATCATAT
GGCAAGCGAGTTCCGCGCATGTGACCATGATGAGCTTGCAAATCACCATT
TATGAGTGAAGTACTTGTAATTGTACGATCACACCAGAGTGTCTGCAGCA
TGCCGACGGAGCTGACATCACTTGGCATCTTGCTCACACACAGTCTTGGC
AGCTATGTTGACTCGATGCCATGGCACGTGTGGTACCCCCCGGGGTGCAG
TAAGCCTTATCATTCCGCGTACGTGCTTGTCATTGTGAGCACCAAGCTCC
AGCCTCTGTTTTTGACGTGTTTACACTGCGCGGAGCCTCATCCAAAATTA
GCATACGCAATGCAGGCCAGCAAGCGCTTGCACCGCATGCAAGCCAATGC
ATCAGTTTCGTACAATGGCAGCATGTTGCTGATTCTGCTGCAAATCGCCA
TGATACTTCTACAATACAGGGACATTAAGCCTGGCAATGTTATGTTTGAC
AAGCGTGGCACTGCAAAGCTGGTGGACTTCAGCATGGCTGGGGTGCTGGA
GTTTGGACATGACGAGCGACCCAGCATGAATGAGACTTTCGACCTCACAG
GTGTGCAGAATGCACCACATGCTTTGAATCAAACAGGCGTAAATGACACG
TCACAGTGGATCTGGCGACCATACTGGTACAGAACTGGCATGTGATATAC
GCCCATTTGCAAGCCGCACTGTGATGTTTCAAGATACTTGCATGGCAACA
CTTTTGGGTGCGATGGATAACGTCGCCTTGTTGTTCACGTGCCCTTCGGC
ATACTGCATGGTGGAGAGTTCATGTCAAGACATGAGTAAACTTTGAAGCC
GTTACTGGCTGAGTAGACGTCTGCAGTGCTGTACTGCCTTTCCTTTGTCG
TTGGCCTCGTTCTCGTATTTGTATGGATCAGCAGCTGTTCTAGCTGCTCA
TGTGCGCATGTACTTCGAAGTACATTGTAATCGTATTTGTCAGGCTTCCT
AAGCCTGTCATGTACTTTCATGTGGCAGCTAATGGCAAAGCAGGCGTAAG
GCTGCCAATTTGCTGCAGCCGTTGCCGAAGGCGGTTAGGCATGGACGACA
GGGTTGGGCCAGCCATTGGTAGCTCATACTGTAGCATCTACAAACATGGT
GCGCATGCAATGCTGATTGCTCAACTGGTTTGAACCCATGCCTGCGACAT
GTACATGACAAATAATGTCCAGCTAACAGCAGTCATCAGCAGGGGCCATG
TGACAGCAGCAAGGCAACAAGAGATTAGGCTCAATACACGCTTGTGCTGC
TGCGCAGTTCTGCTGCCAGACCATGTCAACTAGCACAGTCAGTGTCAGAC
ATGCTCATGTGGGAGCCTATGATACAGGTCTTGTCAATTTGTAAGTAGGC
GAGCAGGACCATCCGTTGGCGTCCTTATCGGTGGGCACCCGTGTGCTATC
AGCACCTGTTGACCGGTACAGGTGCTGCTGATTCAAGTGTACATCTGGAT
ATGTTGAGCCTTGTGAAAACAGCCTGAGTGTGCGGGATTACCGATGGAGT
GAGGAAACAAGGCTGCCACAACAACTACGTCATAAAGTACAGCGCGAGTC
ACTCCTGGCATTTACATATGATCAAGCTTCTGTCTGAGGTGTCTGAGAAA
TACCATGTGTGTCCTTCTTGCTAAGCACTGCAGCCCAAGCTAAAGTATTT
TGGCCGAATAATTACAAAGCTGCTTTTGTCATCTGTGCACAAGGTGCACC
TGTTGACAAGGATTTCCCGCCAAGACACAACAATGATTTTTTTTGCCAAT
TTTATCTGCAGGCATGCTGTCCTCATTTGCCACAGTGCTGTTATGCTTTG
ATGGTTGCAGGCGACATTGGCAACTGTAGGTTCATGGCACCTGAGGTGGC
ACGGAAGGAGCACTACAACGAGAAGGCAGACATCTACTCATTTGGCCTGC
TGCTATGGGAGATGATAACACTTCAGCAGCCATACATGGGCTTGCTCCGT
TGTGGCACACCCCAATGGTGA
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Coding sequence (CDS) from alignment at Contig_15:425401..427721+

>mRNA_3900 ID=mRNA_3900|Name=jgi.p|Trimin1|160857|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_15:425401..427721+ (Tribonema minus UTEX_B_3156 )
CAGGTGGCGGAGGACATTGCTGCGGCCCTGGCATACATGCATAACCATCG
CCAGTACACTGGTGTACCAGTGCGTATCATACACAGGGACATTAAGCCTG
GCAATGTTATGTTTGACAAGCGTGGCACTGCAAAGCTGGTGGACTTCAGC
ATGGCTGGGGTGCTGGAGTTTGGACATGACGAGCGACCCAGCATGAATGA
GACTTTCGACCTCACAGGCGACATTGGCAACTGTAGGTTCATGGCACCTG
AGGTGGCACGGAAGGAGCACTACAACGAGAAGGCAGACATCTACTCATTT
GGCCTGCTGCTATGGGAGATGATAACACTTCAGCAGCCATACATGGGCTT
GCTCCGTTGTGGCACACCCCAATGGTGA
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