mRNA_3887 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347708
Unique Name	mRNA_3887
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|347708 vs. uniprot
Match: A0A835ZER0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER0_9STRA)

HSP 1 Score: 450 bits (1158), Expect = 7.080e-159
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 3

Query:  102 MLDTPRGLTRQLQAGAPADGQTPIAKYCEDQVYNCYLDEDCAACYNGLQAQGGKIPRPDTLTCPNLLVSYSKALAAGCDVIAKGALHDVIVCFIDISVANMPCGTNPVAALTQAPTVXXXXXXXXXXXQPKVAPGKGAIAKQCKLEGLTCAADLVCAACVKNFQVNLRQQKKGATCASYLALLQKDVPPACDVTTAETPLNDLMECVVDTLIPQTPCGSGKTKPPFLGQFD 794
            MLDTPRGLTRQLQAGAPADGQTPIAKYCEDQVYNCYLDEDCAACYNGLQAQGGKIPRPDTLTCPNLLVSYSKALAAGCDVIAKGALHDVIVCFIDISVANMPCGTNPVAALTQAPTVXXXXXXXXXXXQPKVAPGKGAIAKQCKLEGLTCAADLVCAACVKNFQVNLRQQKKGATCASYLALLQKDVPPACDVTTAETPLNDLMECVVDTLIPQTPCGSGKTKPPFLGQFD
Sbjct:    1 MLDTPRGLTRQLQAGAPADGQTPIAKYCEDQVYNCYLDEDCAACYNGLQAQGGKIPRPDTLTCPNLLVSYSKALAAGCDVIAKGALHDVIVCFIDISVANMPCGTNPVAALTQAPTVXXXXXXXXXXXQPKVAPGKGAIAKQCKLEGLTCAADLVCAACVKNFQVNLRQQKKGATCASYLALLQKDVPPACDVTTAETPLNDLMECVVDTLIPQTPCGSGKTKPPFLGQFD 231

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347708 vs. uniprot

BLAST of jgi.p|Trimin1|347708 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZER0_9STRA	7.080e-159	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_15	contig	Contig_15:325023..328975 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347708\|estExt_Genemark1.C_Ctg_150035
Hectar predicted targeting category	other localisation
TranscriptId	348030
Track	FilteredModels1
ProteinId	347708

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347708	gene_3887	Tribonema minus UTEX_B_3156	gene	Contig_15 325023..328975 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347708	Trimin1\|347708\|estExt_Genemark1.C_Ctg_150035	Tribonema minus UTEX_B_3156	polypeptide	Contig_15 325096..328874 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3887_3	exon_3887_3	Tribonema minus UTEX_B_3156	exon	Contig_15 325023..325236 -
exon_3887_2	exon_3887_2	Tribonema minus UTEX_B_3156	exon	Contig_15 325787..326125 -
exon_3887_1	exon_3887_1	Tribonema minus UTEX_B_3156	exon	Contig_15 328659..328975 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_3887	UTR3_3887	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_15 325023..325095 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3887	CDS_3887	Tribonema minus UTEX_B_3156	CDS	Contig_15 328659..328874 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_3887	UTR5_3887	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_15 328875..328975 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_15:325023..328975-
coding sequence from alignment at Contig_15:325023..328975-

spliced messenger RNA

>mRNA_3887 ID=mRNA_3887|Name=jgi.p|Trimin1|347708|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=870bp|location=Sequence derived from alignment at Contig_15:325023..328975- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCACCGCAGTGGCGCTGGCGCTCTTGGCGGGAGGCAGGACCTGCGATGCT
TTGGGGTTTCCGTTCTGGCGCTTGCGGCAGGACACTGCCCAGGAGGTTGC
GATGCTGGACACACCTAGAGGATTAACGCGGCAGCTGCAGGCTGGTGCGC
CAGCAGACGGGCAGACTCCCATAGCCAAATATTGCGAAGATCAAGTGTAC
AACTGTTACCTCGACGAGGACTGCGCGGCATGCTACAATGGACTGCAGGC
GCAGGGCGGCAAAATCCCCAGACCGGACACGCTTACGTGCCCCAACCTGC
TGGTGTCGTATAGCAAGGCGCTCGCCGCAGGCTGCGACGTGATTGCCAAG
GGCGCCCTCCACGACGTCATCGTCTGCTTCATCGACATCTCCGTTGCGAA
CATGCCCTGCGGCACCAACCCCGTGGCAGCGCTCACACAGGCCCCTACCG
TAGCCCCCTCTGCAGCCCCCACTGTCGCGCCTACCCAGCCCAAGGTCGCG
CCTGGCAAGGGCGCGATTGCGAAGCAATGTAAATTGGAGGGGCTGACGTG
CGCTGCGGATTTGGTGTGCGCGGCGTGCGTGAAGAACTTCCAGGTGAACC
TGAGGCAGCAGAAGAAGGGCGCCACGTGCGCGTCGTACCTGGCGCTGCTG
CAGAAGGATGTCCCCCCAGCATGTGACGTGACCACCGCGGAGACCCCCCT
GAACGACCTCATGGAGTGTGTTGTGGACACACTCATCCCCCAGACACCCT
GCGGCAGCGGCAAAACGAAGCCCCCCTTTCTGGGCCAGTTCGACTAGGCT
TCCTGAGCAAGGTGCTGATTCCCCCAACACAGCACACACACACGCACACA
TTTCGCCACAGGTCTCGGCA

protein sequence of jgi.p|Trimin1|347708

>Trimin1|347708|estExt_Genemark1.C_Ctg_150035 ID=Trimin1|347708|estExt_Genemark1.C_Ctg_150035|Name=jgi.p|Trimin1|347708|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=232bp
MLDTPRGLTRQLQAGAPADGQTPIAKYCEDQVYNCYLDEDCAACYNGLQA
QGGKIPRPDTLTCPNLLVSYSKALAAGCDVIAKGALHDVIVCFIDISVAN
MPCGTNPVAALTQAPTVAPSAAPTVAPTQPKVAPGKGAIAKQCKLEGLTC
AADLVCAACVKNFQVNLRQQKKGATCASYLALLQKDVPPACDVTTAETPL
NDLMECVVDTLIPQTPCGSGKTKPPFLGQFD*

mRNA from alignment at Contig_15:325023..328975-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3887 ID=mRNA_3887|Name=jgi.p|Trimin1|347708|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3953bp|location=Sequence derived from alignment at Contig_15:325023..328975- (Tribonema minus UTEX_B_3156 )
GCACCGCAGTGGCGCTGGCGCTCTTGGCGGGAGGCAGGACCTGCGATGCT
TTGGGGTTTCCGTTCTGGCGCTTGCGGCAGGACACTGCCCAGGAGGTTGC
GATGCTGGACACACCTAGAGGATTAACGCGGCAGCTGCAGGCTGGTGCGC
CAGCAGACGGGCAGACTCCCATAGCCAAATATTGCGAAGATCAAGTGTAC
AACTGTTACCTCGACGAGGACTGCGCGGCATGCTACAATGGACTGCAGGC
GCAGGGCGGCAAAATCCCCAGACCGGACACGCTTACGTGCCCCAACCTGC
TGGTGTCGTATAGCAAGGTAAGTGGTCTACGATGCTGAGTGTGGTGTACA
ATGCTTTGTCCTAACGTAATCTGATGACCTGATTCATGCCACTCTTCCAC
AAACCAAGTTATGCAGTTCACGTCGATGAACATATGGTTGCGGCTTCAGC
CGATGGCTGCAATCAGTCCCTCAGCACCACGAAACACAAGGCATCAGCAT
GCCTGTCAAAGTCATTGTAAGTTGGCGGCCTCCGCTGCAGCCTCTCCTGG
TTTTGCAAGCAGCCGAAGCTTTCACAAACACAGACTTTGTATGCCGCAAA
GAAGTAGGCAGCTGTGCAGCTGTTACAGCAGATGAAAACACACACAAACA
CTATTTTGAACATATTGGGCGTGCACATATTTACTGCGCCCATCACAAGT
GCAGCAATGCACATGAGTTTTTCTCGGAAGCTAGTACTAGTACAAGCCCT
CACCGGTTCCTTTCTGACCGATGGGGTAGCTTGCTGCCAAGACTTACAAC
TGACGAGGCACTTCGGCAATGCTTGCTGCCGTGGCTGCCAACAGGCGCCC
ATGATATTTTCTGGTTGATTTCGTGGTGGCAGTACAATCAAATGTTTCAG
TGAAGGCCCATGTGATCATTGTCAGCATCAGTGAGGCTGGCACACTGTGC
CTTACATTCTGTGCAGTTGAGAGAGTTTGCAGGAATACAGCATAGGCAGG
ATGCTCGCTGACTTGATGACGAAATGAAAGCGTTTGCATACACAGCAGCA
ATCCACGCAATGGCCCCTCTCTCTCAGCTTGTCTTTGCAGCCCGTGCTGG
CAGTTTGAATGCCATGCCAAGTGTAGATTAGATTGCCATGCTGCCGTATC
CATGTTTCAGTTTGCCCGGCCGAGCCACCCTGCCAGTTTGGTTAGGAACA
AATCAAAGTTTAGATGCACATGCTGCACCAGCGCTCAGGCTGTGCTGCGT
TGTTGCACCACAGTGCTCTGTGGCACCATGGTATAAGTTATGTGAACACA
TTCTGCTAGTCTACCTCAACAACAGCGCACCAGTGAGCAAAACCCATAGG
TCTATGGTTGTCATGTACCTTTTTATGAATTTCCCCGACCATTGTTCGTT
GCATATCTTGATTGGACAACGTTCGGAAAGCATTCAATCATTTGCATCGT
GCCCGTCAGTGGAAATTACATCTCGCAGACGATGTGCTGAGTGCCGCTAT
ACTTGTCCTTGGCAAGGCAGTTAAATGCACTCTCCATTCAAACGTATTCT
GGCCTCAAAACCCTGCTGTAATCAATGATGAACACTTGCATCACTGTCGG
ACTCCAATAGCTGAACTGATCCAGTGGGTCTTAATGAGTTGAAATTGAAT
ACCTTTGGTACCTGAATCAGTATGCAAGTGGGCCCTTCCTGTGCTTTGAA
CTTTTGGCAGACATACAGTGTCTTGGCAGCCCTGAGCCAAATGAGGCCCA
TTTGATTCAATGCTACATTAAGGTGCAACTGCACTGTTGCATAATTCAGG
TCATGGTCCCCGTGGAGCACAATCAAATCCATGGCTTGCAGGCTTGCCTT
ACACAGCCAGATTAGTTCCAGTATTGGTTTTGCGAATGAGCAGTCAGCTT
GGGTACACTTTATCAGTGCACGCGGCTGCATGACATGACACTGAGAAGCG
TTGCTGCTTGATGCTAAGACACATGTTGATCTCTTGTACCTGCGTATATC
TCCGTGACACCGAAGCCAGCTTATCTGGTCAGCTTATTCATTCCTTACAC
ATAATACATAAGCAGGCGCAGGCGACACTGCTTCTCCTGTTGTGCAAACC
AAGTTTTTACTGCTGCACTGACGAAGTGCTTTGCTAATGTCCCTACAAAG
GTCTTGAACTTGTAGTTGAAGTATGCTCGCCATACCGCCAGATGACAACG
AACTCAGTGCGCGGGTGCCGCAAACGCATGGTGCAGTTGCTCCATCTTCA
AGTCTGCACGTTATGCGAATGTTTGCTTGTGCACATGTTATTTCGCGATA
GAAGGGCTCGATTTTTCCTATTACAGAGGCATGTTTATTATTTCAGTGGA
GGCTGAAATGCTAGTACGGTTGAAAAAGTGTGGTGACTCACACGAGCGCT
TCTGCACCAATAACATTATCATGCTAGGCTGGTTTAGGCACTTGTGGGTG
TGGTGACTTTGCAGCCAGCTGTGCAAGCACTTTAAAAAGGGCGTAGTTCT
TAATGTCGCCTCTCTAGTTTACGGTGGGCCCATGTAAGAATGCACGCGTT
TGTCAATCATTACAAGACCTGCGCTTACTGCGTGCAGCTGCAGGAATGCG
CTGCCAAACATTGCCCACCGCAATAGCAATTCTTGCCAGAGAAGCCCCTC
CAGCCGCTGTATTCACTCCAACATATCCGTTCACACTCTATTCAATGCAA
CGGTGATACACAGGTGCACTGCGCGCACACTTCAGACCTCCACATCCTGA
TGCGTAGGTGCACTGCTCGCCGATGTCACACCACACATATCCTGATGCGC
AACCACCCGTCCCCTGCCCCTCTGCACCTTGCTGTTGCATTGCGTCACAG
GCGCTCGCCGCAGGCTGCGACGTGATTGCCAAGGGCGCCCTCCACGACGT
CATCGTCTGCTTCATCGACATCTCCGTTGCGAACATGCCCTGCGGCACCA
ACCCCGTGGCAGCGCTCACACAGGCCCCTACCGTAGCCCCCTCTGCAGCC
CCCACTGTCGCGCCTACCCAGCCCAAGGTCGCGCCTGGCAAGGGCGCGAT
TGCGAAGCAATGTAAATTGGAGGGGCTGACGTGCGCTGCGGATTTGGTGT
GCGCGGCGTGCGTGAAGAACTTCCAGGTGAACCTGAGGCAGCAGAAGAAG
GGCGCCACGTGCGCGTCGTACCTGGCGCTGCTGCAGAAGGTGCGTGCACG
GACCGTGCTCAGAACATTATTGAGCATACTTACGCTAAGGTACAAAATGA
GACTTCACAGTTGAAGTAATTGTGACAACTGCGGCCAACTTGCTGATTGT
GAGAAAAAAGGCACCATGACCACGCTGCGGTGGCGTGCATTAATCTTAGT
TTGATTTGGCTGTTTTCCTGCTTCAAACCATTGCCCTTTCTTCAACAAAT
GTTGTTGATAATTTGACGGCACCATTTGGTGGTGCAAAGCTCGGCAATTG
GGGTTCACACAGCTCAAAAGCAGTGCATCATGATGCCACGAAGGCAACGC
AGTGCTTGCTCATCGTGACTTGCACAAAGCACGACAGCGTACGAACTCAT
ACGCCTACACACATCTGGGTGTGCATCAACTTGCCTGCAATGAGCTTTTG
CCTTTTTTTCCCTGAAGAAGAGTCCAGACTGTGAACAGGATGCTGCCTGG
TACCATGAAAAGGTCAAAGCAACTATCGTTCTGCCCAAGGTCTGCCGGTC
CTGACTGCTCTTTCATTCATATGTTCCTCTCGAACGCAGGATGTCCCCCC
AGCATGTGACGTGACCACCGCGGAGACCCCCCTGAACGACCTCATGGAGT
GTGTTGTGGACACACTCATCCCCCAGACACCCTGCGGCAGCGGCAAAACG
AAGCCCCCCTTTCTGGGCCAGTTCGACTAGGCTTCCTGAGCAAGGTGCTG
ATTCCCCCAACACAGCACACACACACGCACACATTTCGCCACAGGTCTCG
GCA

Coding sequence (CDS) from alignment at Contig_15:325023..328975-

>mRNA_3887 ID=mRNA_3887|Name=jgi.p|Trimin1|347708|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=696bp|location=Sequence derived from alignment at Contig_15:325023..328975- (Tribonema minus UTEX_B_3156 )
ATGCTGGACACACCTAGAGGATTAACGCGGCAGCTGCAGGCTGGTGCGCC
AGCAGACGGGCAGACTCCCATAGCCAAATATTGCGAAGATCAAGTGTACA
ACTGTTACCTCGACGAGGACTGCGCGGCATGCTACAATGGACTGCAGGCG
CAGGGCGGCAAAATCCCCAGACCGGACACGCTTACGTGCCCCAACCTGCT
GGTGTCGTATAGCAAGGCGCTCGCCGCAGGCTGCGACGTGATTGCCAAGG
GCGCCCTCCACGACGTCATCGTCTGCTTCATCGACATCTCCGTTGCGAAC
ATGCCCTGCGGCACCAACCCCGTGGCAGCGCTCACACAGGCCCCTACCGT
AGCCCCCTCTGCAGCCCCCACTGTCGCGCCTACCCAGCCCAAGGTCGCGC
CTGGCAAGGGCGCGATTGCGAAGCAATGTAAATTGGAGGGGCTGACGTGC
GCTGCGGATTTGGTGTGCGCGGCGTGCGTGAAGAACTTCCAGGTGAACCT
GAGGCAGCAGAAGAAGGGCGCCACGTGCGCGTCGTACCTGGCGCTGCTGC
AGAAGGATGTCCCCCCAGCATGTGACGTGACCACCGCGGAGACCCCCCTG
AACGACCTCATGGAGTGTGTTGTGGACACACTCATCCCCCAGACACCCTG
CGGCAGCGGCAAAACGAAGCCCCCCTTTCTGGGCCAGTTCGACTAG