mRNA_3858 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347695
Unique Name	mRNA_3858
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|347695 vs. uniprot
Match: A0A835ZBC2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBC2_9STRA)

HSP 1 Score: 546 bits (1407), Expect = 8.580e-196
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 3

Query:   30 MLALIASTTLAALYAIYEHTVPHEAVVLTRDQGSDVVVNWLPAVLSGLASGFAVFRLSKLIKGEEFLPSNMQDNAFPAAFLFGLGGVVLHEFLELATSQKGGLTAWAPLLSIVLTFGCLARYAQGLANEQNPSLAPSIASIVLTGRYVMNAIITGPEEPKEAETVTASVVAAGKKAFKKGKEAVGAVPPPQPPAPDVFAEFMPHLVVLGIAVALTVRFLSGSKDVVPKSAPWCIMAAGIAACANAVYRQVLSTAAGAVAHPDDFAALIAIATASACVARFGVTLQAD 890
            MLALIASTTLAALYAIYEHTVPHEAVVLTRDQGSDVVVNWLPAVLSGLASGFAVFRLSKLIKGEEFLPSNMQDNAFPAAFLFGLGGVVLHEFLELATSQKGGLTAWAPLLSIVLTFGCLARYAQGLANEQNPSLAPSIASIVLTGRYVMNAIITGPEEPKEAETVTASVVAAGKKAFKKGKEAVGAVPPPQPPAPDVFAEFMPHLVVLGIAVALTVRFLSGSKDVVPKSAPWCIMAAGIAACANAVYRQVLSTAAGAVAHPDDFAALIAIATASACVARFGVTLQAD
Sbjct:    1 MLALIASTTLAALYAIYEHTVPHEAVVLTRDQGSDVVVNWLPAVLSGLASGFAVFRLSKLIKGEEFLPSNMQDNAFPAAFLFGLGGVVLHEFLELATSQKGGLTAWAPLLSIVLTFGCLARYAQGLANEQNPSLAPSIASIVLTGRYVMNAIITGPEEPKEAETVTASVVAAGKKAFKKGKEAVGAVPPPQPPAPDVFAEFMPHLVVLGIAVALTVRFLSGSKDVVPKSAPWCIMAAGIAACANAVYRQVLSTAAGAVAHPDDFAALIAIATASACVARFGVTLQAD 287

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347695 vs. uniprot

BLAST of jgi.p|Trimin1|347695 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZBC2_9STRA	8.580e-196	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_15	contig	Contig_15:46485..51614 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347695\|estExt_Genemark1.C_Ctg_150005
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-03_000410.1
TranscriptId	348017
Track	FilteredModels1
ProteinId	347695

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347695	gene_3858	Tribonema minus UTEX_B_3156	gene	Contig_15 46485..51614 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347695	Trimin1\|347695\|estExt_Genemark1.C_Ctg_150005	Tribonema minus UTEX_B_3156	polypeptide	Contig_15 46514..51614 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3858_1	exon_3858_1	Tribonema minus UTEX_B_3156	exon	Contig_15 46485..46581 +
exon_3858_2	exon_3858_2	Tribonema minus UTEX_B_3156	exon	Contig_15 46722..46839 +
exon_3858_3	exon_3858_3	Tribonema minus UTEX_B_3156	exon	Contig_15 48203..48316 +
exon_3858_4	exon_3858_4	Tribonema minus UTEX_B_3156	exon	Contig_15 49124..49256 +
exon_3858_5	exon_3858_5	Tribonema minus UTEX_B_3156	exon	Contig_15 50028..50119 +
exon_3858_6	exon_3858_6	Tribonema minus UTEX_B_3156	exon	Contig_15 50877..51125 +
exon_3858_7	exon_3858_7	Tribonema minus UTEX_B_3156	exon	Contig_15 51525..51614 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_3858	UTR5_3858	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_15 46485..46513 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3858	CDS_3858	Tribonema minus UTEX_B_3156	CDS	Contig_15 46514..46581 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_15:46485..51614+
coding sequence from alignment at Contig_15:46485..51614+

spliced messenger RNA

>mRNA_3858 ID=mRNA_3858|Name=jgi.p|Trimin1|347695|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=893bp|location=Sequence derived from alignment at Contig_15:46485..51614+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACGGGTGGCGGGCGGCGGCGGCGAGGCGATGCTGGCTCTCATTGCATCT
ACAACGCTGGCGGCGCTCTACGCAATATACGAACACACTGTGCCACATGA
GGCGGTGGTGCTGACGCGGGACCAGGGCAGCGATGTCGTGGTCAACTGGC
TGCCGGCGGTGCTAAGTGGGCTTGCTAGTGGGTTTGCTGTCTTCCGGCTC
TCGAAGCTTATCAAGGGAGAGGAGTTTCTTCCCTCCAACATGCAGGACAA
CGCATTCCCAGCAGCGTTCCTGTTTGGCCTGGGCGGCGTGGTTCTGCATG
AGTTTCTGGAGCTGGCAACTTCCCAGAAGGGTGGTCTGACTGCGTGGGCT
CCGCTGCTGAGCATTGTGCTCACCTTTGGCTGCCTGGCGCGCTACGCGCA
AGGCCTGGCAAACGAGCAGAACCCCAGCCTGGCACCATCCATCGCATCTA
TCGTGCTCACTGGGCGTTACGTGATGAATGCCATCATAACCGGCCCGGAG
GAGCCCAAGGAAGCAGAGACTGTCACCGCCTCAGTGGTGGCAGCGGGCAA
GAAGGCTTTCAAGAAGGGGAAGGAGGCCGTCGGTGCAGTCCCCCCTCCCC
AGCCGCCCGCACCAGACGTCTTTGCCGAGTTCATGCCGCACCTTGTGGTA
CTGGGCATTGCGGTGGCTCTCACTGTGCGCTTCTTGTCAGGGTCCAAGGA
CGTGGTGCCCAAGAGTGCGCCGTGGTGCATCATGGCGGCGGGCATTGCGG
CCTGCGCCAACGCTGTCTACAGGCAAGTGCTCTCGACAGCAGCAGGGGCG
GTGGCCCACCCAGACGACTTTGCGGCCCTCATTGCCATCGCCACCGCAAG
CGCCTGCGTGGCACGCTTCGGTGTTACGCTGCAGGCCGACTGA

protein sequence of jgi.p|Trimin1|347695

>Trimin1|347695|estExt_Genemark1.C_Ctg_150005 ID=Trimin1|347695|estExt_Genemark1.C_Ctg_150005|Name=jgi.p|Trimin1|347695|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=288bp
MLALIASTTLAALYAIYEHTVPHEAVVLTRDQGSDVVVNWLPAVLSGLAS
GFAVFRLSKLIKGEEFLPSNMQDNAFPAAFLFGLGGVVLHEFLELATSQK
GGLTAWAPLLSIVLTFGCLARYAQGLANEQNPSLAPSIASIVLTGRYVMN
AIITGPEEPKEAETVTASVVAAGKKAFKKGKEAVGAVPPPQPPAPDVFAE
FMPHLVVLGIAVALTVRFLSGSKDVVPKSAPWCIMAAGIAACANAVYRQV
LSTAAGAVAHPDDFAALIAIATASACVARFGVTLQAD*

mRNA from alignment at Contig_15:46485..51614+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3858 ID=mRNA_3858|Name=jgi.p|Trimin1|347695|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5130bp|location=Sequence derived from alignment at Contig_15:46485..51614+ (Tribonema minus UTEX_B_3156 )
CACGGGTGGCGGGCGGCGGCGGCGAGGCGATGCTGGCTCTCATTGCATCT
ACAACGCTGGCGGCGCTCTACGCAATATACGAACACACTGTGCCACAGTA
AGTCTGAACACACACACAACCTGCATTTTTCTGCATGCATGCGTTTGACC
AGCACAGTCAGCACATCGTCGTGCAGTCTCAACCGTGGTGACATACATGA
AGTGATGATTTTGTATGAATCTGCATCTTCGATGCAGTGAGGCGGTGGTG
CTGACGCGGGACCAGGGCAGCGATGTCGTGGTCAACTGGCTGCCGGCGGT
GCTAAGTGGGCTTGCTAGTGGGTTTGCTGTCTTCCGGCTCTCGAAGCTTA
TCAAGGTAAATGTGCCAGCGAAATGTGGGATATTGCTTACTTGTGCAACA
AATATCCAAGGCGTTTATCAAGCGGTTTGTGGTCTGGTGTGTGGTGAGTG
AGTTGAAGGCAGGACTGTAGAGAGAGTTGAAGAAACATGTATGCCTGCAA
ACCTGCTACTAGAGCTGTCTCGCAACGCGATCCACTAGCTGTTCGTGTCT
GCAGCTGCTGTTCTTGTCACGACTGCGGTCCCTAGGCCTTGCAATTCCTC
GTATATGGCAGCGCCCCGAATTCTGCAGGACAAGTGAAGCCGGTTGCGAA
CTGCCTCTGAGTACGTGCTTTCCTGTGCATGCGATGAGAGCAACTGTGCG
ACGCAAAAAATTAGGAAGCATCATGGTTCCAGTGTGGTGCTGATCGCTTG
TCACGTTCTCAAGCACTTCAGTCTGAGGCACAACAATGCACATCAGCAGC
AGCACTTAGCCCAACTTAATGAAAGGTGCACTGCACGCACATGATTTCAT
CTGCCAACCTCGGGTATCGTCGCAGAGGTCCACACACTACAACGCAACTG
TCTGATAACTGTTGATATCTAGTATATATACGTAGTGCCGTAGACATCTG
GGTGCCCGCACTTCTTGCACATCAGGTTTACTCTCATGTTTGCAGCTTTG
ACGCGTTGTAGTTTTGCCCGCTTGTCAGCTGTTGCTTTAATGGTGCTCAA
TCAACGCTTAGAGCCATTCTGAAAAGGCGGGCGGCTTGCGAGGTCTGATC
GGCACAAGTCGATTACATCCCTTTGCACCATGTACACGTTAATGCCGGTG
CTATCTGATCAAGCAAGATCTCAATTGTTCATTTCTATAAGTACAATTTG
TCTGGTGAACGCCAAAATGTAATCATAGTCATGAGCAGAATACATCTCCT
TCACACGTCGTGCATGATTGTATGGTGATAGCAACACGTTCCTCTGTCGC
AGAATCAGGTGCAATTTGCACCGTTACTTTTCACCGGCAGCAGCCACTGT
ACTGCGCACAGCTCATGCAAAACATAGATTAGATACATTTGACAAATACA
TCTGCAGTGCCGCAGCAGACTGTAGGGTGTGTTCAGTGGGTAATGCGATG
TTTGTGTTTGACAGAAATTCACACAGCGTTGTGACATCAGAGGAAAAATT
CACATGGCACACTCATGTGGGGGCCAGCAAACATTTGACATGGCACGCAT
TTGCACGCCCGATGCGGCGATGCCAATGCAGCTCTGCCAACCTAGCTACG
ATTGTGTACGCGCATCGCACACGCCGTGATTCATGTCCTGTATGGCGTGC
ATCCTGTGCTTAGGTACTTTACGTCCTCCACTGCACTCCCCTTCTGGCAC
TCACCTCTGCAATCGCAGGGAGAGGAGTTTCTTCCCTCCAACATGCAGGA
CAACGCATTCCCAGCAGCGTTCCTGTTTGGCCTGGGCGGCGTGGTTCTGC
ATGAGTTTCTGGAGCTGGCAACTTCCCAGAAGGTGCGACGCTGAATGCCT
CGCATTGCCGAAGGGCTATAGAAGTATATGTGTCAGGCAGTGTTTATCTT
GATGTCCCCGGGTACCTGCGTGCAGAGATTTGGGCAGCTCACATTGCAGC
AATCGCAGACGGAACGTCACGTGTTCAGAAATTATCACAATCTCAATACC
TGAAAAGGCATCGTACTGCACATACGTCAGCTGTAGCCACTTCACTCAGA
TAATGCACTTTCTCTTTTCAAGTATGAACTGATCACCTCATGTCTCTCGG
TTGTTTTTTGCTGCCGACGGACACTGCTGCTGACCCAGCATTATCTTTTG
TGAGATTCCTTGTTCACATGCGCATTGGCGTTTTCCTGCCATTGCAGACT
TCCTGTGTCTCTGGCAGGGCAGTGCACTCACTTGCTGAGCATCTACCTCA
TCTGTACAATTCTTGCAACGGGATGCTGCACCTTTCCATGGCATGCAACT
ATTGTGTGTCGCAGAGCGGCATTATGTCATAGAGTAGACTGCAGCAGTGC
TCAGCGCTACCTGAGACGACTTTGCACCGCTGTTTTGTTCACCACAAAAA
CACATGTGCCACCATGGTTTGCATCCCTTGCGCCCTTCATCGCAGCGCAC
GCGCTGTCAAGGTGTACAAGCTGACCCGTCCTTGGACTTTCTCGACTTAA
AATACAGGTGGCAATGCCAAAAACACACATACCGCCATTCTTTCCATCAG
GCGTCCTTCACAATGCCATACACTTCTGTCAAGTTTTCCAACTTGCGGTA
CTTGCCTGTTACTGAACTCCCGTCCTTTGGATGGTGCAGGGTGGTCTGAC
TGCGTGGGCTCCGCTGCTGAGCATTGTGCTCACCTTTGGCTGCCTGGCGC
GCTACGCGCAAGGCCTGGCAAACGAGCAGAACCCCAGCCTGGCACCATCC
ATCGCATCTATCGTGCTCACTGGTGAGAACAGCTGAAGAGCACTGCTTTT
TTTAAAGCACCCTGGTAACCATCGTTTACAAGTTCGCACAGTGGGGGATG
CAGTTGGCTTTCTCAGGGCCTTCTAGTGTGTTATAGAGTGTTGCATATGA
GCTGCCTGCCAGCAAAGGTTGGCAGTCATGGACAGAACAAGGATAAGGCC
CTTTTTTTTACCCCCCCAAAAGTCAGTGCTCTGCAGGTGGAGAAGCTGTA
GTGGAGAAAGTCTTTACTATACTACTAGTCATTATTGCTGGCAAGCAAGT
CAACCAATGATCGGGAAGCAAGTAGCTGTAGAGCGAGAAAATGTGGTTGC
CTTTCTGAGTTTCCTCGTGTTATTCATAATTCATGCTACATGATGCATTA
CAGTAGGTGCAGTTGTGATGTTGCAGTTAACCCTAACCCTAACCCTGAGC
CCTGGACTCATGCCTCAACACATCTCTGCTGATCGCTGCAATGATGATCT
CTGTCCGTGTTCAAAGCGTCAGTATTCTCACAGCCAGATAGAAGCATCTG
CTGGCCGAGCAGCATACACACACATATCATATCAAACAGCCCGCAACATG
GCAATTCAGCAAACACCGAAGAAGGAAATGTTCATGTGCATTGCCCATGG
CCTACTTGTGCAGGTACCTTGCTATGTTAGCTCTACAGTACGTGCACACC
CGTTGAGGTCCTCTACAGCCGCTCTCATGCTGCCGCTGATGTACACGTTC
TCTTCGCGTGTCTTGCTTGTTGCTATGCGATTGCTATGATCAGGGCGTTA
CGTGATGAATGCCATCATAACCGGCCCGGAGGAGCCCAAGGAAGCAGAGA
CTGTCACCGCCTCAGTGGTGGCAGCGGGCAAGAAGGTATTTGAACGAGAA
GCAAAGCAGCGCATCACAAAAGTCACAATTCAATGGCTAATATATTAGCC
CTCAACGCAGAGCTCTCTGCGATGGATTGTTACCGCAGCGGCCTAAGAGT
GCACTGGCAGATGATGTATGGACTGCTGTTGTATTGACCAAAACATCGTT
GATGGATGGTTGACTCAACTCTTCCGTAGTTACAATCGGGGCATCAACCA
CTAGTGGACCTCGTCGCCTCGATGTGCTGCTCTGTGCAAGTACTTGACAA
CTGCGTGGAGGCGCAGGTTGTCGTCGTTGCAGCAGGAGATGTGCGCGTCC
CAAAATGCAGGACATGTGCAGCTGCCTCCCTGTGCTTGCTTAGGCCGCAT
GCAGATTGCTTGGCTACGGAGCTTGTTACGGCTATTACAAGCCAAACCTC
AAGGGAACATGTACATGTACATCTACTTTGCATATGTCCCAGACTGCCTG
TCAATATCATTTTTCTTGGATCAGAAGTTGTTTGGTTTTGCGCATTCAAT
GAGCTTGTTGCGCATTACACTACCCACAGATATTGCAGAAAAGGGCAAAT
TGACAGCGACAGCGATCGCCCCCCCCCCCCCGCAACACACAGGGTGTCTC
GATCAACCTCATGGTGCACTTTCTGGTTCTACGCATTGCAGCAGCACGCT
TCACAACCCGCAGAGTGTGCATCATTGCACTATGTATGGGTGTACGATAG
AAGTCCGTGACCACCTTTCCTTTGCTTTGTGTTCATGTGCAGGCTTTCAA
GAAGGGGAAGGAGGCCGTCGGTGCAGTCCCCCCTCCCCAGCCGCCCGCAC
CAGACGTCTTTGCCGAGTTCATGCCGCACCTTGTGGTACTGGGCATTGCG
GTGGCTCTCACTGTGCGCTTCTTGTCAGGGTCCAAGGACGTGGTGCCCAA
GAGTGCGCCGTGGTGCATCATGGCGGCGGGCATTGCGGCCTGCGCCAACG
CTGTCTACAGGCAAGTGCTCTCGACAGCAGCAGGGGCGGTGGTGTGCCAG
TTCATGGCATTTTAACTTGCAAAAGAAAAGAGGCAGTTTTTCTTTTAAGA
TGTAAATCCCTTGCATGTTGCGCACGCATGTACAGTACTTAAAGGAGTTT
TGAAATATCATGCAACGAGTAGCACATGGTGGACAGATATGCGTCACAAT
GTGCTCTCCAGTGATGCTTGTGAGTTATGCTTTGTTGAAGCGCATCCCTT
AGTTTGCCAAACTACTACTTCCCTGCAAATACTTCGTTTTCGATACTGCA
GCAGTACAGTACTTGGTGATGATGGCCCCTTCTCCTAGACGCCAATAGCT
GTTTGCTGCAGTCACTGACAATGCAAATCTGCATCAATGCTGTATTGACG
TGTGACGTGCCACAACAGGACCGCGTCTGCAAACCCGGAGGCCCACCCAG
ACGACTTTGCGGCCCTCATTGCCATCGCCACCGCAAGCGCCTGCGTGGCA
CGCTTCGGTGTTACGCTGCAGGCCGACTGA

Coding sequence (CDS) from alignment at Contig_15:46485..51614+

>mRNA_3858 ID=mRNA_3858|Name=jgi.p|Trimin1|347695|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=864bp|location=Sequence derived from alignment at Contig_15:46485..51614+ (Tribonema minus UTEX_B_3156 )
ATGCTGGCTCTCATTGCATCTACAACGCTGGCGGCGCTCTACGCAATATA
CGAACACACTGTGCCACATGAGGCGGTGGTGCTGACGCGGGACCAGGGCA
GCGATGTCGTGGTCAACTGGCTGCCGGCGGTGCTAAGTGGGCTTGCTAGT
GGGTTTGCTGTCTTCCGGCTCTCGAAGCTTATCAAGGGAGAGGAGTTTCT
TCCCTCCAACATGCAGGACAACGCATTCCCAGCAGCGTTCCTGTTTGGCC
TGGGCGGCGTGGTTCTGCATGAGTTTCTGGAGCTGGCAACTTCCCAGAAG
GGTGGTCTGACTGCGTGGGCTCCGCTGCTGAGCATTGTGCTCACCTTTGG
CTGCCTGGCGCGCTACGCGCAAGGCCTGGCAAACGAGCAGAACCCCAGCC
TGGCACCATCCATCGCATCTATCGTGCTCACTGGGCGTTACGTGATGAAT
GCCATCATAACCGGCCCGGAGGAGCCCAAGGAAGCAGAGACTGTCACCGC
CTCAGTGGTGGCAGCGGGCAAGAAGGCTTTCAAGAAGGGGAAGGAGGCCG
TCGGTGCAGTCCCCCCTCCCCAGCCGCCCGCACCAGACGTCTTTGCCGAG
TTCATGCCGCACCTTGTGGTACTGGGCATTGCGGTGGCTCTCACTGTGCG
CTTCTTGTCAGGGTCCAAGGACGTGGTGCCCAAGAGTGCGCCGTGGTGCA
TCATGGCGGCGGGCATTGCGGCCTGCGCCAACGCTGTCTACAGGCAAGTG
CTCTCGACAGCAGCAGGGGCGGTGGCCCACCCAGACGACTTTGCGGCCCT
CATTGCCATCGCCACCGCAAGCGCCTGCGTGGCACGCTTCGGTGTTACGC
TGCAGGCCGACTGA