mRNA_3842 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160194
Unique NamemRNA_3842
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|160194 vs. uniprot
Match: A0A835ZF18_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF18_9STRA)

HSP 1 Score: 434 bits (1116), Expect = 7.290e-154
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1 
Query:    1 MTTIAAEGSIVSEKAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSVVSAYLSMPREAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLEAVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVFANPLTR 657
            MTTIAAEGSIVSEKAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSVVSAYLSMPREAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLEAVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVFANPLTR
Sbjct:    1 MTTIAAEGSIVSEKAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSVVSAYLSMPREAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLEAVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVFANPLTR 219
[Close]
BLAST of jgi.p|Trimin1|160194 vs. uniprot
Match: A0A485KPN3_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPN3_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.040e-53
Identity = 105/205 (51.22%), Postives = 132/205 (64.39%), Query Frame = 1 
Query:   40 KAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSVVSAYLSMPREAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSL--EAVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVFANP 648
            K  LR  I   L  + +  IAA+S  +  HL TLP + ++  V AYL+MP EA T  I+  +F  GK++YVPKV G +  DM M ++ES   IESFP +KWNIPEP+L   + LA  +   T D+DL+I+PG AFDA CNRLGHGKGYYDSF +R   AAKA G+ +P TVGI L  Q+V SVP + HD  LD VVTP  V   P
Sbjct:   22 KKTLRKDIDHQLKHMAREDIAAASANLQRHLVTLPEFIRAKSVCAYLAMPNEASTDTILREIFAQGKQLYVPKVTGGNSEDMLMLRVESEADIESFPKSKWNIPEPALLLPSGLARLNALDTLDVDLIIVPGVAFDASCNRLGHGKGYYDSFFERY--AAKADGH-LPATVGIALALQLVDSVPTSAHDRVLDMVVTPNGVVRKP 223
[Close]
BLAST of jgi.p|Trimin1|160194 vs. uniprot
Match: A0A067D9P6_SAPPC (5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9P6_SAPPC)

HSP 1 Score: 179 bits (454), Expect = 2.820e-53
Identity = 96/206 (46.60%), Postives = 129/206 (62.62%), Query Frame = 1 
Query:   34 SEKAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSVVSAYLSMPREAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEP--SLEAVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVFAN 645
            S+KA LR  I   L  L +  + A SEA+  H+  L  +  +  VS YL+M  EA+T  ++DALF AGKRVYVPKV+G    DM M +++S  ++ +FP +KW IPEP  SL +     D     D+D+V++PG AFD RCNRLGHGKGYYD FL+R    A   G  +PVT+GI LE Q+V +VP + HD  LD V TP+ +  +
Sbjct:    7 SQKAVLRKHIAGLLRALSRDEVVAQSEALAQHVVALDVFRHARSVSVYLAMEAEAKTSTLVDALFAAGKRVYVPKVIGAKSEDMVMLRVDSATEMATFPKSKWGIPEPPSSLPSGRPRIDALDALDVDIVLVPGVAFDPRCNRLGHGKGYYDCFLERY---ASRNGGKLPVTIGIALEAQIVDAVPTSGHDKMLDMVATPQGILRS 209
[Close]
BLAST of jgi.p|Trimin1|160194 vs. uniprot
Match: A0A0G4F0S7_VITBC (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F0S7_VITBC)

HSP 1 Score: 180 bits (457), Expect = 3.020e-53
Identity = 100/214 (46.73%), Postives = 131/214 (61.21%), Query Frame = 1 
Query:   25 SIVSEKAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSVVSAYLSMPR-EAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLEAVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVP--SVPVTDHDVPLDFVVTPEQVFANPLTR 657
            +I  +K ALR  ++  L  L   +I   S A+   L   P + +S  V  YLSMP  E  T  ++   F  GKRV+VP+VVG +P DMRM ++ S+ +I SFP++ W IPE SL+  L  EDGT  GDIDLVI PG AFD    RLGHGKGYYD FL R FA+ K RG P   T+GI L EQ++P  ++P+   D+ LD+VVTP+ V+     R
Sbjct:   28 AISEQKKALRRQVRGQLKSLSHESIEPQSAAVFAQLSQHPTFVRSQCVCVYLSMPSGEIDTHTLVREAFRQGKRVFVPRVVGKNPPDMRMVEVSSVDEISSFPMSPWGIPELSLDETLRREDGTYCGDIDLVICPGVAFDQSGRRLGHGKGYYDCFLARLFASLKDRGRPRTTTIGIGLREQLLPLATIPMDSLDMFLDWVVTPDGVYEGAEGR 241
[Close]
BLAST of jgi.p|Trimin1|160194 vs. uniprot
Match: A0A8K1CD56_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD56_PYTOL)

HSP 1 Score: 177 bits (449), Expect = 1.870e-52
Identity = 99/215 (46.05%), Postives = 130/215 (60.47%), Query Frame = 1 
Query:    1 MTTIAAEGSIVSEKAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSVVSAYLSMPREAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLE--AVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVF 639
            MTT    G+I   K ALR +I  +L  +E   I   S+AI   +  LP + ++  +S YL MP+EA T  I+   F   K+VYVPK+VG    D++M    S+  I++FP  KW IP+P LE  A     D  T+ D+DLV+LPG AFD    RLGHGKGYYDSFL+R   A      P+PVTVGICL  Q+V +VP++ HD  LD +VTPE+V 
Sbjct:    1 MTTEMTTGAI---KKALRKSIAASLRAIEDQEITRQSDAIAQRIAALPEFQQAMALSVYLHMPKEAATRNILTHSFAEKKKVYVPKIVGKGAEDLKMVHASSLEDIDAFPKDKWQIPDPPLENSAGEPRNDAITSRDLDLVLLPGVAFDRSGGRLGHGKGYYDSFLRRLTEAYDEHNRPLPVTVGICLSSQLVDAVPLSPHDRMLDVIVTPEEVI 212
[Close]
BLAST of jgi.p|Trimin1|160194 vs. uniprot
Match: A0A4D9D4C9_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4C9_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.780e-50
Identity = 100/217 (46.08%), Postives = 134/217 (61.75%), Query Frame = 1 
Query:   16 AEGSIVSEKAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSVVSAYLSMP-REAQTMP-IMDALFTAGKR-------VYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLEAVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVF 639
            A  S+  +K  LR +I   L  L+   +AA +  +   L  L  ++ S+ VS YLSMP +E  T P +++A+ T GK        VYVPKV GP P DM M  + S   + SFP++KW IPEP L   L+     +   +DLV++PG AFD +CNRLGHGKGYYDSFL R FA+  A G   P+T+G+ LEEQ+V SVPV   D+PLD VVTP++V+
Sbjct:    9 AGASLSEKKKDLRKSITARLRALDDSYVAAEASRLFPRLLALEEYTDSTCVSLYLSMPAKEVPTFPDLLEAVMTDGKGAEGRARDVYVPKVTGPAPGDMVMLPLSSPEDVSSFPVSKWGIPEPPLPPSLSP----SLPPLDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKVY 221
[Close]
BLAST of jgi.p|Trimin1|160194 vs. uniprot
Match: A0A7S0P191_9EUKA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P191_9EUKA)

HSP 1 Score: 171 bits (434), Expect = 3.980e-50
Identity = 95/209 (45.45%), Postives = 128/209 (61.24%), Query Frame = 1 
Query:   25 SIVSEKAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSVVSAYLSMPR-EAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLEAVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVFANP 648
            S  +EKAALR +++T L +L+  A+ A+S A       L   S+ +  S YL+MP  E QT  I+ +LF AGK VY+P+V G    +M+M Q+ SM ++ S P   W IPEP   A  AA+  +    IDLV++PG +FD  C RLGHGKGYYDSFL+R  AA   +G P   TVG+ L+EQ+V  VP+  HDV LD+V  PE +   P
Sbjct:   12 SAAAEKAALRKSMRTTLRELDADAVRAASRAACERALALDVVSQCTCASVYLAMPTGECQTDTILRSLFDAGKSVYIPRVTGKAREEMQMLQVRSMDEVTSLPRNAWGIPEPPQSA--AADGASAPSSIDLVVVPGVSFDRSCGRLGHGKGYYDSFLERLQAARHEQGLPPARTVGLGLQEQLVERVPLGPHDVRLDYVCLPESLSVKP 218
[Close]
BLAST of jgi.p|Trimin1|160194 vs. uniprot
Match: A0A484E3J8_BRELC (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3J8_BRELC)

HSP 1 Score: 168 bits (426), Expect = 3.410e-49
Identity = 84/179 (46.93%), Postives = 111/179 (62.01%), Query Frame = 1 
Query:  109 SEAILGHLKTLPCWSKSSVVSAYLSMPREAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLE--AVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVF 639
            S+ +   + TLP ++ +  +S YL MP+EA T  +++A F   K+VYVPK+ G  P D++M Q+ SM  I SFP  KW IP+P L     +  +D     DIDLV+LPG AFD    RLGHGKGYYDSFL R      A G P P T+G+CL  Q+V  VP+ DHD  +D VVTP++V 
Sbjct:   21 SQLLTEKVLTLPEFAHARGISVYLEMPKEAATFELLEAAFALNKKVYVPKITGQSPEDLKMLQVSSMDDIRSFPKDKWQIPDPPLHLNGGMLRDDVECVNDIDLVLLPGVAFDRLGGRLGHGKGYYDSFLHRLMKHYSAIGLPPPTTIGLCLTPQLVQHVPLADHDRKIDIVVTPDEVI 199
[Close]
BLAST of jgi.p|Trimin1|160194 vs. uniprot
Match: W7TP46_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP46_9STRA)

HSP 1 Score: 171 bits (433), Expect = 9.190e-49
Identity = 99/217 (45.62%), Postives = 131/217 (60.37%), Query Frame = 1 
Query:   16 AEGSIVSEKAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSVVSAYLSMP-REAQTMP-IMDALFTAGKR-------VYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLEAVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVF 639
            A  S+  +K  LR +I   L  L+   +AA +  +   L  L  +  S+ VS YLSMP +E  T P ++  + T GKR       VYVPKV GP P DM M  + S   + SFP++KW IPEP L    +     +   +DLV++PG AFD +CNRLGHGKGYYDSFL R FA+  A G   P+T+G+ LEEQ+V SVPV   D+PLD VVTP++V+
Sbjct:   89 AGASLSEKKKNLRKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEVPTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSSFPVSKWGIPEPPLPPSFSP----SLPPLDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKVY 301
[Close]
BLAST of jgi.p|Trimin1|160194 vs. uniprot
Match: K3W867_GLOUD (J domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W867_GLOUD)

HSP 1 Score: 172 bits (436), Expect = 1.190e-48
Identity = 91/208 (43.75%), Postives = 121/208 (58.17%), Query Frame = 1 
Query:   40 KAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSVVSAYLSMPREAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLEAVL--AAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVFANPLTR 657
            K  LR  I   L   E   +A  S+ +   +  LP +  + V+S YL MP+EA T  ++ A F AGK+VYVPK+ G    D++M Q  SM  I +FP  KW IP+P L +    A ED     D++LV++PG AFD    RLGHGKGYYDSFL+R   A    G P+P T+G+CL  Q+V  VP++ HD  LD +VTPE+V      R
Sbjct:    5 KKELRKQIAAVLKATEAAEVALQSQQLTERIYALPEFRNAKVLSVYLEMPKEAATRGLLTAAFEAGKKVYVPKITGRGAEDLKMVQALSMNDINTFPKDKWQIPDPPLTSASGDAREDPIAALDLELVLMPGVAFDRSGGRLGHGKGYYDSFLRRLGEAYAKSGKPLPTTIGLCLSCQLVDQVPLSPHDKMLDIIVTPEEVVTQRWPR 212
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160194 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZF18_9STRA7.290e-154100.005-formyltetrahydrofolate cyclo-ligase n=1 Tax=Trib... [more]
A0A485KPN3_9STRA1.040e-5351.225-formyltetrahydrofolate cyclo-ligase n=1 Tax=Apha... [more]
A0A067D9P6_SAPPC2.820e-5346.605-formyltetrahydrofolate cyclo-ligase n=2 Tax=Sapr... [more]
A0A0G4F0S7_VITBC3.020e-5346.735-formyltetrahydrofolate cyclo-ligase n=1 Tax=Vitr... [more]
A0A8K1CD56_PYTOL1.870e-5246.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9D4C9_9STRA1.780e-5046.085-formyltetrahydrofolate cyclo-ligase n=1 Tax=Nann... [more]
A0A7S0P191_9EUKA3.980e-5045.455-formyltetrahydrofolate cyclo-ligase n=1 Tax=Calc... [more]
A0A484E3J8_BRELC3.410e-4946.935-formyltetrahydrofolate cyclo-ligase n=1 Tax=Brem... [more]
W7TP46_9STRA9.190e-4945.625-formyltetrahydrofolate cyclo-ligase n=1 Tax=Nann... [more]
K3W867_GLOUD1.190e-4843.75J domain-containing protein n=1 Tax=Globisporangiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_12contigContig_12:1482143..1484162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160194|e_gw1.12.253.1
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko04131
KEGG rclassRC00183
KEGG ReactionR02301
KEGG ModuleM00337,M00340
KEGG Pathwayko00670,ko01100,ko03050,map00670,map01100,map03050
KEGG koko:K01934,ko:K02731,ko:K22255
EC3.4.25.1,6.3.3.2
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005515,GO:0005524,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006952,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009064,GO:0009108,GO:0009109,GO:0009111,GO:0009396,GO:0009397,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0015942,GO:0016053,GO:0016054,GO:0016874,GO:0016879,GO:0016882,GO:0016999,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0019752,GO:0019842,GO:0019899,GO:0030234,GO:0030272,GO:0030554,GO:0031406,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0032780,GO:0032787,GO:0033013,GO:0033014,GO:0033218,GO:0034641,GO:0035639,GO:0035999,GO:0036094,GO:0042030,GO:0042168,GO:0042219,GO:0042365,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0042560,GO:0042737,GO:0042742,GO:0043086,GO:0043167,GO:0043168,GO:0043177,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043462,GO:0043603,GO:0043604,GO:0043648,GO:0043649,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046394,GO:0046395,GO:0046483,GO:0046653,GO:0046655,GO:0046657,GO:0046700,GO:0050790,GO:0050830,GO:0050896,GO:0051117,GO:0051186,GO:0051187,GO:0051188,GO:0051336,GO:0051346,GO:0051704,GO:0051707,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0072341,GO:0097159,GO:0097367,GO:0098542,GO:0098772,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605
Preferred nameMTHFS
Description5-formyltetrahydrofolate cyclo-ligase activity
COG categoryH
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0212@1|root,KOG3093@2759|Eukaryota
Evalue8.06e-57
Seed ortholog2880.D7FQL2
Hectar predicted targeting categoryother localisation
Ec32 ortholog description5-formyltetrahydrofolate cyclo-ligase
Ec32 orthologEc-01_009140.1
TranscriptId160516
TrackFilteredModels1
ProteinId160194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160194gene_3842Tribonema minus UTEX_B_3156 geneContig_12 1482143..1484162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160194Trimin1|160194|e_gw1.12.253.1Tribonema minus UTEX_B_3156 polypeptideContig_12 1482143..1484162 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3842_4exon_3842_4Tribonema minus UTEX_B_3156 exonContig_12 1482143..1482256 -
exon_3842_3exon_3842_3Tribonema minus UTEX_B_3156 exonContig_12 1482882..1482946 -
exon_3842_2exon_3842_2Tribonema minus UTEX_B_3156 exonContig_12 1483437..1483659 -
exon_3842_1exon_3842_1Tribonema minus UTEX_B_3156 exonContig_12 1483905..1484162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3842CDS_3842Tribonema minus UTEX_B_3156 CDSContig_12 1483905..1484162 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3842 ID=mRNA_3842|Name=jgi.p|Trimin1|160194|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=660bp|location=Sequence derived from alignment at Contig_12:1482143..1484162- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACGATAGCAGCAGAGGGCTCCATAGTGTCAGAAAAGGCCGCCTT
GAGGTCTGCCATCAAGACAGCACTGGGCAAGCTGGAGAAGCCAGCAATAG
CTGCCAGTTCTGAAGCTATCCTCGGTCATTTGAAGACGCTGCCGTGCTGG
TCAAAATCCAGTGTTGTCAGTGCCTACCTGTCGATGCCCAGAGAAGCGCA
GACGATGCCCATAATGGATGCACTGTTCACGGCAGGCAAACGGGTCTACG
TGCCAAAGGTTGTCGGTCCTGACCCGAGCGACATGCGGATGTACCAAATT
GAGAGCATGGGCCAAATAGAGAGCTTTCCGCTGACCAAGTGGAACATTCC
TGAGCCATCACTGGAGGCAGTTTTGGCTGCAGAGGATGGAACTACGACAG
GGGATATAGACTTGGTGATTCTCCCTGGGTGCGCTTTTGATGCCCGCTGC
AACAGGCTAGGGCACGGCAAGGGCTATTACGACTCCTTTTTGAAACGATG
CTTCGCGGCCGCAAAAGCACGTGGCAACCCGATTCCAGTGACAGTGGGCA
TCTGCCTTGAGGAACAGGTCGTGCCCAGCGTGCCGGTGACTGACCACGAC
GTGCCACTGGACTTTGTCGTCACGCCGGAACAAGTATTTGCCAATCCATT
GACGCGTTGA
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protein sequence of jgi.p|Trimin1|160194

>Trimin1|160194|e_gw1.12.253.1 ID=Trimin1|160194|e_gw1.12.253.1|Name=jgi.p|Trimin1|160194|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=220bp
MTTIAAEGSIVSEKAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCW
SKSSVVSAYLSMPREAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQI
ESMGQIESFPLTKWNIPEPSLEAVLAAEDGTTTGDIDLVILPGCAFDARC
NRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHD
VPLDFVVTPEQVFANPLTR*
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mRNA from alignment at Contig_12:1482143..1484162-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3842 ID=mRNA_3842|Name=jgi.p|Trimin1|160194|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2020bp|location=Sequence derived from alignment at Contig_12:1482143..1484162- (Tribonema minus UTEX_B_3156 )
ATGACCACGATAGCAGCAGAGGGCTCCATAGTGTCAGAAAAGGCCGCCTT
GAGGTCTGCCATCAAGACAGCACTGGGCAAGCTGGAGAAGCCAGCAATAG
CTGCCAGTTCTGAAGCTATCCTCGGTCATTTGAAGACGCTGCCGTGCTGG
TCAAAATCCAGTGTTGTCAGTGCCTACCTGTCGATGCCCAGAGAAGCGCA
GACGATGCCCATAATGGATGCACTGTTCACGGCAGGCAAACGGGTCTACG
TGCCAAAGGTGAGCTCCACGATGCTACGACCCTGGGAAGCACAAGACTGG
AGGTTGTTTCTGTCGTGTTCTCACACATCATGAACGCTTTAAAACATGCA
GTTACGCTCCATGCCTTGGTCTTGCGCTCACAGGGTGTTCTGGCTGCTGT
GACATGTAGAATCATGACGACATGTAGCATCAGTGACATGTGAATGCCCT
GACAAAATGAAAAGAAAGCCCTGTTTGAACGTTCATCCTACTGAAATGCA
CAGGTTGTCGGTCCTGACCCGAGCGACATGCGGATGTACCAAATTGAGAG
CATGGGCCAAATAGAGAGCTTTCCGCTGACCAAGTGGAACATTCCTGAGC
CATCACTGGAGGCAGTTTTGGCTGCAGAGGATGGAACTACGACAGGGGAT
ATAGACTTGGTGATTCTCCCTGGGTGCGCTTTTGATGCCCGCTGCAACAG
GCTAGGGCACGGCAAGGGCTATTACGGTGAGAAGCTCATTTTTGCCGGCA
CAATGTGTATGCACGGCGATATTCCACAGTTGCTCAGTGTCAGAGCCTCC
TCGCATCAGGCGCCAGCGCATGTCTGGCACATTGCTTCATGAATGTAGCA
AAGCTCACGGGTACGTACATGACATATCACTGCAAAGGCCACTGCGAGCG
AAATGCAGCATGGTGGCTACTTGCTGGGTGCCACCTCCCTCCGGGTGACC
TGGCCATGCATGCGGGACAGTATTTGCATAGCTCGCACATTGCAACCGCC
AGGTTTTACTCCTTCACAACACCAAGACTTGCACTGATCAAGGGGATGCT
GGATATGATTTGTCCTGACAAGCCAAGTGATGGATGCTTGTGCAGGATGC
ACCCTGGACGGTGGACGTGCAACGTGTGTTTCACAATGACATGTGTTTGG
TGTCCTATGGCAACCTCAAGTCATCGCACTGGGAGACTGACGATCGTGTT
GCGCTGTTGCCTGCAGACTCCTTTTTGAAACGATGCTTCGCGGCCGCAAA
AGCACGTGGCAACCCGATTCCAGTGACAGTGGTGAGTGCAAGCGGACAAG
GACGGCACCTTGCAAGGGCCATGTAGTTCTCTCCTGTAGGTCATGCGTGC
TTGTGTACGACTTTTACGGCAAGTCAGCATCTCTCGCACCTGAAACGTGC
GAAAGTTGCATCCCATGATCACAGTAAACTGCAGAGTTGACCACAACACG
CGCCCTTGCCTTCATTGCCGGACAAACTGACTCTCATGTGGGCATGGCGC
CGCTCATTGTTAGCACTGCAGTCTAACAGTTGAAACGAGTGCTGGTACGC
CGATTTTGGCTGATGAGCATGCGTGTAATGACGCGTAAGCGCTTGCCGCC
GTGCAGCGACGCAGCCCGCGCTGACTGCGCATGCCTTGCTTTAAGCACGC
AAGTATACTGCAATGGAAGTGCTGTGACAAATTTTCCCTCAGCTGTGTTG
ATTGGTGGCTTCTGGCCCGATTCACAGTTCACACAGCGGTCCGTGTCACG
TTGGTCTCAAGCGCGCAGTGGTAGGGAGACCTGCACAGGCCATCAGCCCG
TATTCAGCAAGTGCAAATCACCACTCTCCGATCTCTCATATGTTACCAGA
TCGCGTCAACCTGCCCCACCAACTCATCAATTACCCGCGATCGCGCGCTG
TCACAGGGCATCTGCCTTGAGGAACAGGTCGTGCCCAGCGTGCCGGTGAC
TGACCACGACGTGCCACTGGACTTTGTCGTCACGCCGGAACAAGTATTTG
CCAATCCATTGACGCGTTGA
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Coding sequence (CDS) from alignment at Contig_12:1482143..1484162-

>mRNA_3842 ID=mRNA_3842|Name=jgi.p|Trimin1|160194|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=660bp|location=Sequence derived from alignment at Contig_12:1482143..1484162- (Tribonema minus UTEX_B_3156 )
ATGACCACGATAGCAGCAGAGGGCTCCATAGTGTCAGAAAAGGCCGCCTT
GAGGTCTGCCATCAAGACAGCACTGGGCAAGCTGGAGAAGCCAGCAATAG
CTGCCAGTTCTGAAGCTATCCTCGGTCATTTGAAGACGCTGCCGTGCTGG
TCAAAATCCAGTGTTGTCAGTGCCTACCTGTCGATGCCCAGAGAAGCGCA
GACGATGCCCATAATGGATGCACTGTTCACGGCAGGCAAACGGGTCTACG
TGCCAAAGGTTGTCGGTCCTGACCCGAGCGACATGCGGATGTACCAAATT
GAGAGCATGGGCCAAATAGAGAGCTTTCCGCTGACCAAGTGGAACATTCC
TGAGCCATCACTGGAGGCAGTTTTGGCTGCAGAGGATGGAACTACGACAG
GGGATATAGACTTGGTGATTCTCCCTGGGTGCGCTTTTGATGCCCGCTGC
AACAGGCTAGGGCACGGCAAGGGCTATTACGACTCCTTTTTGAAACGATG
CTTCGCGGCCGCAAAAGCACGTGGCAACCCGATTCCAGTGACAGTGGGCA
TCTGCCTTGAGGAACAGGTCGTGCCCAGCGTGCCGGTGACTGACCACGAC
GTGCCACTGGACTTTGTCGTCACGCCGGAACAAGTATTTGCCAATCCATT
GACGCGTTGA
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