mRNA_3839 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160308
Unique NamemRNA_3839
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|160308 vs. uniprot
Match: A0A836CPP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPP5_9STRA)

HSP 1 Score: 699 bits (1803), Expect = 4.710e-254
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 1
Query:    1 MGRRSGSRADEGYRIETLNRLAFPKGQNPICELTGLPATIQCVTPHVTLYYATREHAEQAWHGIMRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKKALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAYLLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYRAQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTALAFYDKVVDIWYKLLASMCHGSADEVPEEQLAEVPTYPLALALASDALLSETSLQSCILDPSSGPDATVTQQLAEVDASMLLLLVRCWPLTCVHMSCRPQLTCC 1062
            MGRRSGSRADEGYRIETLNRLAFPKGQNPICELTGLPATIQCVTPHVTLYYATREHAEQAWHGIMRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKKALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAYLLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYRAQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTALAFYDKVVDIWYKLLASMCHGSADEVPEEQLAEVPTYPLALALASDALLSETSLQSCILDPSSGPDATVTQQLAEVDASMLLLLVRCWPLTCVHMSCRPQLTCC
Sbjct:    1 MGRRSGSRADEGYRIETLNRLAFPKGQNPICELTGLPATIQCVTPHVTLYYATREHAEQAWHGIMRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKKALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAYLLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYRAQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTALAFYDKVVDIWYKLLASMCHGSADEVPEEQLAEVPTYPLALALASDALLSETSLQSCILDPSSGPDATVTQQLAEVDASMLLLLVRCWPLTCVHMSCRPQLTCC 354          
BLAST of jgi.p|Trimin1|160308 vs. uniprot
Match: A0A7S2V026_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V026_9STRA)

HSP 1 Score: 372 bits (954), Expect = 4.010e-124
Identity = 179/259 (69.11%), Postives = 220/259 (84.94%), Query Frame = 1
Query:   28 DEGYRIETLNRLAFPKGQNPICELTGLPATIQCVTPHVTLYYATREHAEQAWHGIMRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKKALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAYLLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYRAQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTALAFYDKVVDIWYKLLASM 804
            +  YRIE LN LAFPKG+ P CELTGLPA +QCVT H+TLYYAT EHAEQAWHGIM +ISPL+GPLR PA I+GS+++R ++   ++MSK+AL+DLCQQEASKFL  G YELAVPGAIQA  L+F+++ +G  S+EMVP YLLLS+ANLGL RLQ AEEFL++ANW VL+NPDCS+A+RSQLH+NFGKLY AQ KL+ AL+EL+  +Y SS+EVGPEH+ TSAGYFL+A++FY QRK+  +LAFYDKVVDIWYK LAS+
Sbjct:   12 EANYRIEPLNTLAFPKGKIPKCELTGLPARVQCVTEHITLYYATDEHAEQAWHGIMAKISPLLGPLRAPAKIVGSEDDRAKRDYTMQMSKRALIDLCQQEASKFLVAGRYELAVPGAIQA--LSFSKEIFGDGSIEMVPPYLLLSEANLGLGRLQQAEEFLAMANWSVLKNPDCSNAIRSQLHRNFGKLYTAQDKLEDALKELAQDIYSSSLEVGPEHVDTSAGYFLVANIFYKQRKIQNSLAFYDKVVDIWYKFLASV 268          
BLAST of jgi.p|Trimin1|160308 vs. uniprot
Match: F0Y022_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y022_AURAN)

HSP 1 Score: 350 bits (899), Expect = 3.620e-118
Identity = 168/247 (68.02%), Postives = 204/247 (82.59%), Query Frame = 1
Query:   61 LAFPKGQNPICELTGLPATIQCVTPHVTLYYATREHAEQAWHGIMRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKKALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAYLLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYRAQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTALAFYDKVVDIWYKLLAS 801
            LAFPKG+ P CELTGLPA +QCVTPH+TLYYAT+EHAE+AWHGIM +I+PL+GPLR P+ ++GS+E+R ++   +EMSKKAL+DLC QEASKFL  G YELA+PGAIQA  LAF +D +G  ++EM+  YL L++ANLGL R Q AEEFLSLANW +L+NPDCS+ +RSQLH+NFGKLY AQGKLD+AL ELS  +YCSS+E GPEHI TSAGY+  A VFY Q ++  ALAFYDKVVDIWYK L S
Sbjct:    1 LAFPKGKLPRCELTGLPAAVQCVTPHITLYYATKEHAEEAWHGIMHKIAPLLGPLRAPSVVVGSEEDRAKREYTMEMSKKALIDLCTQEASKFLVAGRYELALPGAIQA--LAFLKDIHGEGAVEMIAPYLQLAEANLGLGRFQQAEEFLSLANWSILKNPDCSNNLRSQLHRNFGKLYSAQGKLDQALVELSHDIYCSSLEAGPEHIDTSAGYYHTASVFYAQHRIENALAFYDKVVDIWYKFLVS 245          
BLAST of jgi.p|Trimin1|160308 vs. uniprot
Match: A0A7S2D7B2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D7B2_9STRA)

HSP 1 Score: 330 bits (846), Expect = 5.870e-108
Identity = 161/271 (59.41%), Postives = 209/271 (77.12%), Query Frame = 1
Query:   43 IETLNRLAFPKGQNPICELTGLPATIQCVTPHVTLYYATREHAEQAWHGIMRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKKALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAYLLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYRAQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTALAFYDKVVDIWYKLLASMCHGS--ADEVPEEQLAE 849
            I  LN LAFPKG++P CELT   AT++C T H+TLYYA+REHAEQAW+GI+ +I+PL+G LR    I+GS+E+R ++   +EMSK+AL+  CQ+EA+KFL  G YELA+PGAI   A+ F +D +G  +L++VP YL L++ANLGL RL  +EEFLSLANW +L+NPDCS  +RSQLH+NFG+LY AQGKLD AL+EL+  VYC S+E GPEH+ TS GY+ MA +FYTQ +V  ALAFYDKV+DIWYK LAS+   S  A+++ E QL E
Sbjct:   16 IRPLNTLAFPKGKHPRCELTDTMATVECETRHLTLYYASREHAEQAWYGIIHKIAPLLGSLRESQAIVGSEEDRAKREYALEMSKRALITPCQEEAAKFLVSGRYELAIPGAI--FAITFIKDIHGNGALDLVPPYLQLAEANLGLGRLGKSEEFLSLANWSILKNPDCSQVIRSQLHRNFGRLYLAQGKLDDALRELTKDVYCLSLEKGPEHVVTSGGYYHMAGIFYTQHRVECALAFYDKVIDIWYKFLASLRSDSTLAEDISESQLQE 284          
BLAST of jgi.p|Trimin1|160308 vs. uniprot
Match: A0A7S1XU96_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU96_9STRA)

HSP 1 Score: 323 bits (828), Expect = 2.620e-104
Identity = 159/256 (62.11%), Postives = 201/256 (78.52%), Query Frame = 1
Query:   37 YRIETLNRLAFPKGQNPICELTGLPATIQCVTPHVTLYYATREHAEQAWHGIMRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKKALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAYLLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYRAQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTALAFYDKVVDIWYKLLASM 804
            Y+IE LN LA PKG+ P CELTG PA  + VT ++TLYYAT EHA+ AW GI+ +I+ L+GPLR PA ++GS+E+R ++   + MSK+AL+DLCQQEASKFL  G  ELA+PGA+QA  LAF +D YG  +++MVP YLLL++ANL L RLQ AEEFLSLANW VL+NPDCSSA+RSQLH+NFGKLY AQ +   AL+ELS  VY S++EVGPEHI TS GYF M + FY Q+++  ALA +DKVV+IWYK L+S+
Sbjct:   40 YKIEPLNTLACPKGKIPRCELTGEPANFELVTEYLTLYYATEEHAQAAWDGIVNKIAMLLGPLRAPAGLVGSEEDRSKREYTIHMSKRALIDLCQQEASKFLVAGRGELAIPGAVQA--LAFCKDVYGEGAIQMVPPYLLLAEANLDLRRLQQAEEFLSLANWTVLKNPDCSSAIRSQLHRNFGKLYSAQERFADALRELSKDVYHSALEVGPEHIDTSVGYFHMGNAFYGQQRIENALAMFDKVVEIWYKFLSSV 293          
BLAST of jgi.p|Trimin1|160308 vs. uniprot
Match: A0A8J2WXE0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXE0_9STRA)

HSP 1 Score: 310 bits (793), Expect = 3.110e-99
Identity = 149/268 (55.60%), Postives = 201/268 (75.00%), Query Frame = 1
Query:   25 ADEG--YRIETLNRLAFPKGQNPICELTGLPATIQCVTPHVTLYYATREHAEQAWHGIMRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKKALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAYLLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYRAQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTALAFYDKVVDIWYKLLASMCHGSAD 822
            ADE   Y++  +  +A+PKGQ P+CE+TGLPA I+C T H+TL+Y  RE AE++WHGIM +I+PL+GPLR+P  +IGS+E+R ++   +++SKKALVDLC QEA KFL  G +ELA+PGA Q   + F  + YG  ++E+V AYL +++AN+GLAR Q AE+FLS+ANW +L+NPD S+A+RS+LH+NFGK+Y A+GKLD+AL EL+  +YCSS+  GPEH+  S GYF  A VFY Q ++  ALAFYDKVVD WYK L   C    D
Sbjct:   11 ADEAPPYKLVDILPMAYPKGQAPVCEMTGLPAKIKCETEHITLFYNNRETAEESWHGIMGKIAPLLGPLRSPPNVIGSEEDRRKREYTLDLSKKALVDLCGQEADKFLVAGRFELALPGAQQE--MKFLTELYGDGAVELVAAYLRMAEANVGLARYQQAEQFLSMANWSILKNPDASNALRSKLHRNFGKVYAARGKLDEALDELAKDIYCSSLASGPEHVDASPGYFHAASVFYAQHRIEHALAFYDKVVDAWYKFLVQ-CRSDPD 275          
BLAST of jgi.p|Trimin1|160308 vs. uniprot
Match: D7FKI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI4_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 3.180e-90
Identity = 144/221 (65.16%), Postives = 181/221 (81.90%), Query Frame = 1
Query:  193 MRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKKALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAYLLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYRAQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTALAFYDKVVDIWYKLLASMCHGS--ADEVPEEQLAE 849
            M +ISPL+GPLR    IIGS+EER R+   V+MSK+AL+DLCQQEASK L QG Y+LAVPGAIQA  LAF+++ +G  S+E VP YLLLS+ANLGL  LQSAE FLS+ANW +L+ P+CS+A+RSQLH+NFGKL+ AQ KLD+AL +LS  VYCSS+EVGPEHI TSAG+FL+A++FY QRKV ++LAFYDKVVDIWYK LAS+ + +  A+ V + QL+E
Sbjct:    1 MHKISPLIGPLRATPQIIGSEEERARREYTVQMSKRALIDLCQQEASKLLVQGRYDLAVPGAIQA--LAFSKEIFGDGSIETVPPYLLLSEANLGLGLLQSAEGFLSMANWSILKTPECSNAIRSQLHRNFGKLHTAQNKLDEALDDLSKDVYCSSLEVGPEHIDTSAGFFLIANIFYAQRKVESSLAFYDKVVDIWYKFLASVRNDANLAENVGKAQLSE 219          
BLAST of jgi.p|Trimin1|160308 vs. uniprot
Match: A0A7S3JYP9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYP9_9STRA)

HSP 1 Score: 276 bits (707), Expect = 1.110e-85
Identity = 138/264 (52.27%), Postives = 188/264 (71.21%), Query Frame = 1
Query:   34 GYRIETLNRLAFPKGQNPICELTGLPATIQCVTPHVTLYYATREHAEQAWHGIMRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKKALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAYLLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYRAQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTALAFYDKVVDIWYKLLASMCHGSADE 825
            GYRIE LN LAFPKGQ P CELTG  AT+ CVTP +TLYY + +HA++AW GIM +I+PL+GPLR P  ++G++E+R R+A   EMSKKALVDLC +EA KF+  G YELAVP ++QA+ L    D Y    ++ +     L++A+LGL R +SAE FL  A+  + ++P+C++ +RS+LH+  GKLY AQ K D+AL EL+  VYC+S+  GPE I  + GYF  A VFY Q ++  ALAFYDK+VDIW+K LA+  +  A++
Sbjct:   11 GYRIEKLNSLAFPKGQLPRCELTGNAATVACVTPWLTLYYESTQHADEAWRGIMHKIAPLLGPLRKPPIVVGTEEDRARRAYAQEMSKKALVDLCVEEADKFILLGKYELAVPASLQALNLL--HDLYSEGCIQSLEPLSQLAEASLGLNRHKSAEIFLGRASCCIYKHPECTNEIRSKLHRQQGKLYLAQNKFDQALNELAKDVYCASLFYGPESIQVAPGYFYAASVFYAQHRIEQALAFYDKLVDIWFKFLANAQNKHANK 272          
BLAST of jgi.p|Trimin1|160308 vs. uniprot
Match: A0A7S0VS81_9CRYP (Hypothetical protein (Fragment) n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0VS81_9CRYP)

HSP 1 Score: 267 bits (682), Expect = 3.420e-83
Identity = 146/305 (47.87%), Postives = 203/305 (66.56%), Query Frame = 1
Query:   46 ETLNRLAFPKGQNPICELTGLPATIQCVTPHVTLYYATREHAEQAWHGIMRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKKALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAYLLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYRAQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTALAFYDKVVDIWYKLLASMCHGSADEVPEEQLAEVPTYPLALALASDALLSETSLQSCILDPSSGPDATVT 960
            + LN LA  KGQ   CELTG PATI      V   Y+ R   E  W+GI  +I+ L+ PLR P  +I S EERER+   V  SK AL+DLC+ EA+KFL  G++EL++PGA+QA  L F+ D YGA  +E+VP YLLL++ANLGL R + AEE+LSLANW +L+NPDCS+  +SQL++NFGKLY +QGK ++AL++L++ VY SS++VGPEHI T+ GY+ +A VFY Q +++ ALA  DKVVD+W+K ++++         +E     P  PL  +   D L + T + + + + S GPD   T
Sbjct:   15 QKLNPLAAAKGQKLTCELTGKPATIVVSYFGVPYNYSDRPTLELDWNGIKSKIAQLLVPLRQPPSVIPSVEERERQEANVRKSKLALIDLCRMEATKFLVHGDFELSIPGAVQA--LRFSLDVYGAGKIELVPCYLLLAEANLGLGRHKQAEEYLSLANWSILKNPDCSNRTKSQLYRNFGKLYASQGKHEEALRQLANDVYFSSLQVGPEHIETAGGYYYLATVFYLQHRLDCALAMCDKVVDVWFKHVSALLDPRHIRPGQE-----PPEPLGESQLMDGLQTLTKIVA-LREESMGPDHITT 311          
BLAST of jgi.p|Trimin1|160308 vs. uniprot
Match: A0A2R5GGV2_9STRA (Zinc finger MYND domain-containing protein 12 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGV2_9STRA)

HSP 1 Score: 263 bits (671), Expect = 7.090e-82
Identity = 132/275 (48.00%), Postives = 189/275 (68.73%), Query Frame = 1
Query:   31 EGYRIETLNRLAFPKGQNPICELTGLPATIQCVTPHVTLYYATREHAEQAWHGIMRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKKALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAYLLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYRAQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTALAFYDKVVDIWYKLLAS--MCHGSADEVPEEQLAE 849
            +GYRIETLN L+ PKG   +CELTG+ A ++ +TP  +LYY ++E A  +W GIM ++ PLV  LR    IIGS+EER+++   + MSK+ALVDL Q+ A +FL +G YEL++PGA+Q   L+F+++ YG  ++++VPAYLLL+Q +LG+   +  +EFL LANW VL+ PDC + +++QL + FGKL  A+GK  +A + L+  +Y +S+  GPEH+  S GYF +A VF  Q +V  ALA YDKVVDIWYK L++  M     D + E Q  E
Sbjct:   23 QGYRIETLNALSAPKGVRYVCELTGVAAGVKMITPFTSLYYGSKEDAILSWEGIMHKLLPLVSQLRAKPVIIGSEEERQKREYSILMSKRALVDLTQRIAQRFLIKGEYELSIPGAMQC--LSFSKEVYGDDTIDLVPAYLLLAQCHLGMRNFRPVQEFLGLANWSVLKTPDCPNEIKAQLERTFGKLCAAEGKHAEAAEHLAKDIYWTSLASGPEHVKVSVGYFNLACVFDAQHRVEAALALYDKVVDIWYKYLSAVRMSGDDTDPLSEAQCEE 295          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160308 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CPP5_9STRA4.710e-254100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V026_9STRA4.010e-12469.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y022_AURAN3.620e-11868.02Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2D7B2_9STRA5.870e-10859.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XU96_9STRA2.620e-10462.11Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8J2WXE0_9STRA3.110e-9955.60Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D7FKI4_ECTSI3.180e-9065.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3JYP9_9STRA1.110e-8552.27Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0VS81_9CRYP3.420e-8347.87Hypothetical protein (Fragment) n=3 Tax=Hemiselmis... [more]
A0A2R5GGV2_9STRA7.090e-8248.00Zinc finger MYND domain-containing protein 12 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_12contigContig_12:1460213..1463334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160308|e_gw1.12.299.1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0044464
Preferred nameZMYND12
Max annot lvl2759|Eukaryota
EggNOG OGs28KGW@1|root,2QSY3@2759|Eukaryota
Evalue5.93e-119
Seed ortholog44056.XP_009033537.1
Hectar predicted targeting categoryother localisation
TranscriptId160630
TrackFilteredModels1
ProteinId160308
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160308gene_3839Tribonema minus UTEX_B_3156 geneContig_12 1460213..1463334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160308Trimin1|160308|e_gw1.12.299.1Tribonema minus UTEX_B_3156 polypeptideContig_12 1460213..1463334 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3839_6exon_3839_6Tribonema minus UTEX_B_3156 exonContig_12 1460213..1460539 -
exon_3839_5exon_3839_5Tribonema minus UTEX_B_3156 exonContig_12 1461294..1461419 -
exon_3839_4exon_3839_4Tribonema minus UTEX_B_3156 exonContig_12 1461719..1461940 -
exon_3839_3exon_3839_3Tribonema minus UTEX_B_3156 exonContig_12 1462199..1462200 -
exon_3839_2exon_3839_2Tribonema minus UTEX_B_3156 exonContig_12 1462516..1462615 -
exon_3839_1exon_3839_1Tribonema minus UTEX_B_3156 exonContig_12 1463047..1463334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3839CDS_3839Tribonema minus UTEX_B_3156 CDSContig_12 1463047..1463334 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3839 ID=mRNA_3839|Name=jgi.p|Trimin1|160308|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1065bp|location=Sequence derived from alignment at Contig_12:1460213..1463334- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAGACGATCAGGATCAAGAGCGGATGAGGGCTATCGAATTGAGAC
GCTCAACAGGCTGGCGTTCCCAAAGGGACAAAACCCTATCTGCGAACTGA
CAGGACTGCCAGCAACGATACAATGCGTGACCCCACACGTGACGCTGTAC
TACGCTACGAGAGAGCATGCCGAGCAGGCTTGGCACGGAATTATGCGGCG
CATCTCCCCACTAGTAGGACCGCTGCGAAATCCGGCTCCAATTATCGGAA
GCAAGGAGGAGAGGGAACGCAAGGCCCTTGTGGTCGAGATGAGCAAGAAG
GCCCTGGTGGACCTGTGCCAGCAGGAGGCCAGCAAGTTCCTCACGCAGGG
CAACTATGAGCTGGCGGTGCCTGGCGCCATACAGGCAATTGCGCTGGCGT
TCGCGCAGGACGCGTACGGCGCGCAGAGCCTGGAGATGGTGCCCGCGTAC
CTGCTGCTGAGCCAGGCCAACCTCGGGCTCGCGCGCCTGCAGAGCGCGGA
GGAGTTCCTGAGCCTGGCCAACTGGGTGGTGCTGCGCAACCCCGACTGCA
GCAGCGCGGTGCGCAGCCAGCTGCACCAGAACTTCGGCAAGCTGTACAGG
GCGCAGGGCAAGCTGGACAAGGCGCTGCAGGAGCTCAGCAGCCACGTCTA
CTGCTCCAGCGTGGAAGTGGGCCCGGAGCACATCAGCACGTCCGCCGGGT
ACTTCCTCATGGCCGATGTGTTCTACACGCAGCGCAAGGTGAACACAGCC
CTGGCCTTCTACGACAAGGTGGTGGATATATGGTACAAGCTGCTGGCCAG
CATGTGCCACGGCTCCGCGGACGAGGTGCCCGAGGAGCAGCTCGCAGAGG
TACCTACATACCCCCTAGCCCTAGCCCTAGCTTCTGATGCATTGTTGTCC
GAGACCAGCTTGCAGAGTTGTATACTTGACCCTAGTTCTGGCCCTGACGC
AACGGTGACACAGCAGCTTGCGGAGGTAGATGCAAGCATGCTTCTACTCC
TAGTGCGGTGCTGGCCTCTTACTTGTGTGCACATGTCGTGCAGACCTCAA
CTGACATGCTGCTAG
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protein sequence of jgi.p|Trimin1|160308

>Trimin1|160308|e_gw1.12.299.1 ID=Trimin1|160308|e_gw1.12.299.1|Name=jgi.p|Trimin1|160308|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=355bp
MGRRSGSRADEGYRIETLNRLAFPKGQNPICELTGLPATIQCVTPHVTLY
YATREHAEQAWHGIMRRISPLVGPLRNPAPIIGSKEERERKALVVEMSKK
ALVDLCQQEASKFLTQGNYELAVPGAIQAIALAFAQDAYGAQSLEMVPAY
LLLSQANLGLARLQSAEEFLSLANWVVLRNPDCSSAVRSQLHQNFGKLYR
AQGKLDKALQELSSHVYCSSVEVGPEHISTSAGYFLMADVFYTQRKVNTA
LAFYDKVVDIWYKLLASMCHGSADEVPEEQLAEVPTYPLALALASDALLS
ETSLQSCILDPSSGPDATVTQQLAEVDASMLLLLVRCWPLTCVHMSCRPQ
LTCC*
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mRNA from alignment at Contig_12:1460213..1463334-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3839 ID=mRNA_3839|Name=jgi.p|Trimin1|160308|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3122bp|location=Sequence derived from alignment at Contig_12:1460213..1463334- (Tribonema minus UTEX_B_3156 )
ATGGGTAGACGATCAGGATCAAGAGCGGATGAGGGCTATCGAATTGAGAC GCTCAACAGGCTGGCGTTCCCAAAGGGACAAAACCCTATCTGCGAACTGA CAGGACTGCCAGCAACGATACAATGCGTGACCCCACACGTGACGCTGTAC TACGCTACGAGAGAGCATGCCGAGCAGGCTTGGCACGGAATTATGCGGCG CATCTCCCCACTAGTAGGACCGCTGCGAAATCCGGCTCCAATTATCGGAA GCAAGGAGGAGAGGGAACGCAAGGCCCTTGTGGTCGAGGTCAGCTACAAA TGTATCATGGTTTGCTGCGCTTTCCAGCACTGGTGTACGAGTCTTAACAT TAGTTGTTCGAGCCATGAAATGACCAGCGCTGGCAGTGCATCAACGTTTC ATCAATAAGCATCAAAAAAGGCATTTCAAGAATCACATGTCGGTCTACTG CATGCCTGCACTAAAATGTCAGCAAGAGCAAGCACTTCTCCAATGCAGTT GTGCCTGCTTGACCCCAATGTATTTTCAACCACACTCAAGAATGCAGCAA CGGTGCCAACGAGGTGCGAGTGCTGTTTTGCACTCGACAGGCAAGTTCAA CAGCATCTCTCCCATGCCACTGCCAGGCTCGTTGCTCGCCTGCACCCACG AGAGACTGCAAACAAATGCGAACTGCCTCTCCGCAGTGAAAGAGCTGCAT GATCTCTGTGCTGCTGCAGATGAGCAAGAAGGCCCTGGTGGACCTGTGCC AGCAGGAGGCCAGCAAGTTCCTCACGCAGGGCAACTATGAGCTGGCGGTG CCTGGCGCCATACAGGCAAGTCCGCCAAACCCGGCACCAACACGCGCCGC GCAGATCACTCACTCGGACATGATAACTTCTATAACCGATACCGGGCAAC AGTCATGAAGTGCTACCTCACCCGGACCAAATAAGGGCTGTGAGACATGC TGTACTACTGGAACACGTCACATGTCCATTTTGCTTTAGCCAGTCAGGGC ACAGGCACGCTGAGCATCAGCACCTGCACGTGCTGCCGTGCTCGCGCGTC CACACGTGCACGGCACCGTCGACCCCCCGCAGCAGCGGAAGGCAACCTCA CATGACCCAAGGCCCTCGTGTGCCAGACGGCGAGTTGTCGTACAGCGTAC GCCACGTTGTCACCCACGCCATGCGGCTCCCAAGGCAATCGCTGGCCAAC ACGGGAATTCGACCTCTCAGCGGCGGCACACACAACCGCGTGCATGCGGG GACGAACGAACAAGTGCCCGATCACCAATGACCAATCGTATGCCGCATGC TCTGCTCTGGCCAAACCCCTGCATATGGCCTCAAGTTCTGCGACCTGATT GCAACCGCTACTGCCGCCTCCTGGGAACTGCGCGCGCCGCGCAGGCGCTG GCGTTCGCGCAGGACGCGTACGGCGCGCAGAGCCTGGAGATGGTGCCCGC GTACCTGCTGCTGAGCCAGGCCAACCTCGGGCTCGCGCGCCTGCAGAGCG CGGAGGAGTTCCTGAGCCTGGCCAACTGGGTGGTGCTGCGCAACCCCGAC TGCAGCAGCGCGGTGCGCAGCCAGCTGCACCAGAACTTCGGCAAGCTGTA CAGGGCGCAGGGCAAGGTGCGTGGGGGTAGCGGCGGCGGGGGGGGGGGGG GGGGGTGCGATGAGGGTGCGGCCGGTGGAGCGCTGCTGCACCGTAGCATC ACGAAGGAGCTTGGTAAAGTCATACTGCAGTGTATGCATGACACCTTGTG GGGCGTCCAATGAAGGCTTCAAGGGCAACTGAGAGTGGCATTTCGGTTCC TCAGGGCAGCCCGACCAGGCGCTGTGGGAACTGATCAGCCTGGATTGCCA TCTTCACAAAAGGTCGTTACCTCACTTGCAACTGTCCGCTTTGTAACTGT CGCGTCGCGCGGCAGCTGGACAAGGCGCTGCAGGAGCTCAGCAGCCACGT CTACTGCTCCAGCGTGGAAGTGGGCCCGGAGCACATCAGCACGTCCGCCG GGTACTTCCTCATGGCCGATGTGTTCTACACGCAGCGCAAGGTGAGTCAC CGTAGCTCCGCATCCAGACGCGCACAAAGGTGACGAGGAGTTGCCCACAA CACACTCGTTTTTGAAGTAAGGTATTTTCATCGGTGCACCGCATGGCAGC AACTCAGCTTCGGGGCCACAAGATGCCAATGACGCGCCCTAGGCCTTGAG TCTGGTGCATTGACGACATGATATTGCACTCCAGCAGCAGCAGACGAGTC TGACCTGTCAACTTGCTGGAGCTGTACAAGTCCCTCCCTCGATCACTTGC GTGCAGGCTGCCGCAAGGATTCCCACGGCTCTTGTCGGATGAAGTCATGT TGTCACAGGGTCAAAGGCAATTGAAACTGAGCACTGACGTTGCTTGGCTG GGCACTGATGCGCCTGCCTGCCTATGACAGCATGCATGAGCACGCCATGC GGTCCACATGTACGCTTGATCAGCACACCAGCCAGCAGCAGCAGGCCTAG GGTTAGGGTTAGGGTTAGAATCAGGACTATATATGGTTAGGTTCGCGGTT GGGGTTAGGGTGAGGGTCAGCAGCATCACACCATACGTCATGTCATAGAC TCCAGCTCATTACGGTGTCGTCTTTGCTTGCGCGCGCACGTCGCAACCCC ACTTAGGGTTAGGGTCAAAGGTAGAGGTAAGAGTTGAAGCGAGGTGAGGT ACAGCATGCCCTACGATGCTACGAGGAATGGCACATGTTGGCATGACATA CCCTGCTCACGCCTTTGACCACATGGCGCCGTGTGCACGCCTCAGGTGAA CACAGCCCTGGCCTTCTACGACAAGGTGGTGGATATATGGTACAAGCTGC TGGCCAGCATGTGCCACGGCTCCGCGGACGAGGTGCCCGAGGAGCAGCTC GCAGAGGTACCTACATACCCCCTAGCCCTAGCCCTAGCTTCTGATGCATT GTTGTCCGAGACCAGCTTGCAGAGTTGTATACTTGACCCTAGTTCTGGCC CTGACGCAACGGTGACACAGCAGCTTGCGGAGGTAGATGCAAGCATGCTT CTACTCCTAGTGCGGTGCTGGCCTCTTACTTGTGTGCACATGTCGTGCAG ACCTCAACTGACATGCTGCTAG
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Coding sequence (CDS) from alignment at Contig_12:1460213..1463334-

>mRNA_3839 ID=mRNA_3839|Name=jgi.p|Trimin1|160308|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1065bp|location=Sequence derived from alignment at Contig_12:1460213..1463334- (Tribonema minus UTEX_B_3156 )
ATGGGTAGACGATCAGGATCAAGAGCGGATGAGGGCTATCGAATTGAGAC
GCTCAACAGGCTGGCGTTCCCAAAGGGACAAAACCCTATCTGCGAACTGA
CAGGACTGCCAGCAACGATACAATGCGTGACCCCACACGTGACGCTGTAC
TACGCTACGAGAGAGCATGCCGAGCAGGCTTGGCACGGAATTATGCGGCG
CATCTCCCCACTAGTAGGACCGCTGCGAAATCCGGCTCCAATTATCGGAA
GCAAGGAGGAGAGGGAACGCAAGGCCCTTGTGGTCGAGATGAGCAAGAAG
GCCCTGGTGGACCTGTGCCAGCAGGAGGCCAGCAAGTTCCTCACGCAGGG
CAACTATGAGCTGGCGGTGCCTGGCGCCATACAGGCAATTGCGCTGGCGT
TCGCGCAGGACGCGTACGGCGCGCAGAGCCTGGAGATGGTGCCCGCGTAC
CTGCTGCTGAGCCAGGCCAACCTCGGGCTCGCGCGCCTGCAGAGCGCGGA
GGAGTTCCTGAGCCTGGCCAACTGGGTGGTGCTGCGCAACCCCGACTGCA
GCAGCGCGGTGCGCAGCCAGCTGCACCAGAACTTCGGCAAGCTGTACAGG
GCGCAGGGCAAGCTGGACAAGGCGCTGCAGGAGCTCAGCAGCCACGTCTA
CTGCTCCAGCGTGGAAGTGGGCCCGGAGCACATCAGCACGTCCGCCGGGT
ACTTCCTCATGGCCGATGTGTTCTACACGCAGCGCAAGGTGAACACAGCC
CTGGCCTTCTACGACAAGGTGGTGGATATATGGTACAAGCTGCTGGCCAG
CATGTGCCACGGCTCCGCGGACGAGGTGCCCGAGGAGCAGCTCGCAGAGG
TACCTACATACCCCCTAGCCCTAGCCCTAGCTTCTGATGCATTGTTGTCC
GAGACCAGCTTGCAGAGTTGTATACTTGACCCTAGTTCTGGCCCTGACGC
AACGGTGACACAGCAGCTTGCGGAGGTAGATGCAAGCATGCTTCTACTCC
TAGTGCGGTGCTGGCCTCTTACTTGTGTGCACATGTCGTGCAGACCTCAA
CTGACATGCTGCTAG
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