mRNA_3831 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160185
Unique NamemRNA_3831
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|160185 vs. uniprot
Match: A0A835ZI51_9STRA (Oxidoreductase, molybdopterin-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI51_9STRA)

HSP 1 Score: 587 bits (1514), Expect = 2.300e-212
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 1 
Query:    1 MSEAEISKLPPKAQREVRKKQQLMARQQQQPAHADAPTAEGCVLPRGQTLARSWIVLDLGTSPSRQSYDPWSRPDDWTLRVTGLKGGHKTLTLQQLRGLGVRQYSDVAWHCVTGWSAVGLQLEGVPMAAVLQALGPAEGWRGALQVSADGYTVNVHREDLESSDAFVCTGWGGGGALLPSEHGGIRIVIPSLFGWKSAKWLSELHFLPYHAKGFWEKLGCHTRGRALEGERWAAGAAPVWEALTWMSSLYYRFGGYTIWVAVMQRGGAALGRVAGFAGAFRRRH 852
            MSEAEISKLPPKAQREVRKKQQLMARQQQQPAHADAPTAEGCVLPRGQTLARSWIVLDLGTSPSRQSYDPWSRPDDWTLRVTGLKGGHKTLTLQQLRGLGVRQYSDVAWHCVTGWSAVGLQLEGVPMAAVLQALGPAEGWRGALQVSADGYTVNVHREDLESSDAFVCTGWGGGGALLPSEHGGIRIVIPSLFGWKSAKWLSELHFLPYHAKGFWEKLGCHTRGRALEGERWAAGAAPVWEALTWMSSLYYRFGGYTIWVAVMQRGGAALGRVAGFAGAFRRRH
Sbjct:    1 MSEAEISKLPPKAQREVRKKQQLMARQQQQPAHADAPTAEGCVLPRGQTLARSWIVLDLGTSPSRQSYDPWSRPDDWTLRVTGLKGGHKTLTLQQLRGLGVRQYSDVAWHCVTGWSAVGLQLEGVPMAAVLQALGPAEGWRGALQVSADGYTVNVHREDLESSDAFVCTGWGGGGALLPSEHGGIRIVIPSLFGWKSAKWLSELHFLPYHAKGFWEKLGCHTRGRALEGERWAAGAAPVWEALTWMSSLYYRFGGYTIWVAVMQRGGAALGRVAGFAGAFRRRH 284
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BLAST of jgi.p|Trimin1|160185 vs. uniprot
Match: A0A7S0KHI9_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KHI9_MICPS)

HSP 1 Score: 219 bits (557), Expect = 2.140e-66
Identity = 129/293 (44.03%), Postives = 162/293 (55.29%), Query Frame = 1 
Query:   31 PKAQREVRKKQQLM--ARQQQQPAHADAPTAEGCVLPRGQTLARSWIVLDLGTSPSRQSYDPWSRPDDWTLRVTGLK---GGHKTLTLQQLRGLG----VRQYSDVAWHCVTGWSAVGLQLEGVPMAAVLQALG-------------PAEGWRGALQVSADGYTVNVHREDLESSDAFVCTGWGGGGALLPSEHGGIRIVIPSLFGWKSAKWLSELHFL------PYHAKGFWEKLGCHTRGRALEGERWAAG-AAPVWEALTWMSSLYYRFGGYTIWVAVMQRGGAALGRVA 822
            P    EV KK++LM  A+++     + +  A     P G  + + W+VLDLG  PSR +YDPWS  DD  +  TGL     G + LTL+Q++       V   +   WHCVTGWS +GL+  GVP + V+ AL              P  GWR   Q SADGY   V R D   SD F+    G  G +LP EHGG R+V PSL+GWKSAK+L E+HFL      P   +GFWEKLGCH RGR  E +RWA G +A VW AL  M+ LY  FGG  +W  VM  GG  LG +A
Sbjct:    9 PNVSAEVAKKRRLMELAKRRDGTGASSSRRAGNSPAP-GNHVVKKWVVLDLGNRPSRATYDPWSAGDDHRISFTGLGPDGAGSRDLTLRQIKAFAGGDWVPMDAPCDWHCVTGWSTLGLRFRGVPFSLVVDALSKNETSGEDEAALTPRPGWRRIYQRSADGYDTTVQRRDA-LSDGFLAVTHGESGEMLPEEHGGPRLVFPSLYGWKSAKFLKEVHFLATADDAPGAKRGFWEKLGCHPRGRWAEEQRWAPGTSAVVWTALAGMTDLYRVFGGVWVWERVMVHGGRVLGAIA 299
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BLAST of jgi.p|Trimin1|160185 vs. uniprot
Match: A0A8J5XY35_DIALT (Oxidored_molyb domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XY35_DIALT)

HSP 1 Score: 211 bits (537), Expect = 2.730e-63
Identity = 114/246 (46.34%), Postives = 146/246 (59.35%), Query Frame = 1 
Query:  106 APTAEGCVLPRGQTLARSWIVLDLGTSPSRQSYDPWSRPDDWTLRVTGLKGGHKTLTLQQLRGLGVRQYSDVAWHCVTGWSAVGLQLEGVPMAAVLQ--ALGPAEG-----WRGALQVSADGYTVNVHREDLESSDAFVCTGWGGGGALLPSEHGGIRIVIPSLFGWKSAKWLSELHFLPYHAKGFWEKLGCHTRGRALEGERWAAG-AAPVWEALTWMSSLYYRFGGYTIWVAVMQRGGAALGRV 819
            A   +   LP GQT A+ WIVLDLG  P+  +Y     P DW+L V    G    L ++ +  LGVR+Y   AWHCVTGW+A+GL  +GVP+ +VL    L  A G     W   +Q +ADGYTV V RED  ++DAF+   + G    +P EHGG R+V P+L+GWKSAKW+ EL     +  GFWE+LGCH RGR    ER+  G +A VW  L     +Y R GG+ +WV VMQ GG ALG V
Sbjct:   69 ATRGQSAGLPDGQTAAKKWIVLDLGLRPAPGAYA--LDPTDWSLAVRAPGGASVELKMRDIEALGVRRYEGHAWHCVTGWTALGLTFDGVPLTSVLAHPKLSAANGGTAPEWDWLVQRAADGYTVPVAREDAMAADAFLALAFDG--QPVPMEHGGPRLVFPALYGWKSAKWVVELELALRYEPGFWERLGCHPRGRVARNERFREGWSAAVWAWLAAAPGVYRRLGGHDVWVFVMQAGGNALGAV 310
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BLAST of jgi.p|Trimin1|160185 vs. uniprot
Match: C1EA92_MICCC (Oxidored_molyb domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EA92_MICCC)

HSP 1 Score: 207 bits (528), Expect = 4.590e-62
Identity = 115/254 (45.28%), Postives = 143/254 (56.30%), Query Frame = 1 
Query:  139 GQTLARSWIVLDLGTSPSRQSYDPWSRPDDWTLRVTGLK---GGHKTLTLQQLRGLGVRQYSDVA---WHCVTGWSAVGLQLEGVPMAAVLQALG-------------PAEGWRGALQVSADGYTVNVHREDLESSDAFVCTGWGGGGALLPSEHGGIRIVIPSLFGWKSAKWLSELHFL------PYHAKGFWEKLGCHTRGRALEGERWAAG-AAPVWEALTWMSSLYYRFGGYTIWVAVMQRGGAALGRVA 822
            G  + + W+VLDLG  PSR +YDPWS  DD  +  TGL     G + LTL+Q++ +    +  +    WHCVTGWS +GL   GVP +AV+ AL              P  GWR   Q SADGY   V R D+   D F+    G  G +L  EHGG R+V PSL+GWKSAK+L E+ FL      P   +GFWEKLGCH RGR  E +RWA G +A VW AL  M+ LY   GG  +W  VM  GG  LG +A
Sbjct:   48 GNHVVKKWVVLDLGNRPSRATYDPWSAGDDHRISFTGLGPDGAGSRDLTLRQIKAVAGGDWVRMPPCDWHCVTGWSTLGLCFRGVPFSAVVDALSKDDDGKENDPAFAPRPGWRRIYQRSADGYDTTVQRRDVH--DGFLAVVHGESGEMLREEHGGPRLVFPSLYGWKSAKFLKEVVFLATDDDAPGARRGFWEKLGCHPRGRWAEEQRWAPGTSAVVWNALAGMTDLYRVVGGVWVWERVMVHGGRVLGAIA 299
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BLAST of jgi.p|Trimin1|160185 vs. uniprot
Match: C1MHY3_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MHY3_MICPC)

HSP 1 Score: 196 bits (499), Expect = 7.510e-58
Identity = 110/250 (44.00%), Postives = 143/250 (57.20%), Query Frame = 1 
Query:  139 GQTLARSWIVLDLGTSPSRQSYDPWSRPDDWTLRVTGL-KGGHKT--LTLQQLRGLGVR----QYSDVAWHCVTGWSAVGLQLEGVPMAAVLQALGPAEGWRGALQVSADGYTVNVHREDLESSDAFVCTGWGGGGALLPSEHGGIRIVIPSLFGWKSAKWLSELHFLPYH---AKGFWEKLGCHTRGRALEGERWAAGAAP-VWEALTWMSSLYYRFGGYTIWVAVMQRGGAALGRVAGFA----GAFR 843
            GQ L + W+VLDLG  P + ++DPW   +D+ +   GL  GG ++  +TL++LR         ++    WHCVTGWSA GL   GVP++ +   L P   WR   Q SADGY V VH +  E ++AF+     G G +L  EHGG R+V P  +GWKSAK+LS + F       A+GFWEKLGCH RGR    ERWA GA+  VW  L W++ LY +  G  +W  VM  GG ALG  A  A    G FR
Sbjct:   53 GQHLVKKWVVLDLGHRPDKSAHDPWREGEDFGVHFHGLGDGGERSRRVTLRELRAACPNAEWARFDSRDWHCVTGWSARGLSFRGVPLSTITALLSPRADWRCLFQRSADGYAVGVHVD--ECANAFLAV-TDGDGEVLSEEHGGPRLVFPDCYGWKSAKFLSSIEFTADASDAARGFWEKLGCHPRGRWAREERWAPGASNGVWTVLAWITGLYRKLFGERVWELVMVHGGRALGAGAAVAERVAGVFR 299
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BLAST of jgi.p|Trimin1|160185 vs. uniprot
Match: A0A2R5GRH4_9STRA (Oxidored_molyb domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRH4_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.300e-51
Identity = 108/261 (41.38%), Postives = 136/261 (52.11%), Query Frame = 1 
Query:  130 LPRGQTLARSWIVLDLGTSPSRQSYDPWSRPDD---WTLRVT------GLKGGHKTLTLQQLRGLGVRQYSDVAWHCVTGWSAVGLQLEGVPMAAVLQALGPA-----------EGWRGALQVSADGYTVNVHREDLESSDAFVCTGWGGGGALLPSEHGGIRIVIPSLFGWKSAKWLSELHFLPYHAKGFWEKLGCHTRGRALEGERWAAGAAPVWEALTWMSSLYYRFGGYTIWVAVMQRGGAALGRVAGFAGAFRRRH 852
            LP GQ LAR WIVLDLG  P++  Y   +   D   W+L++         K    TLTL  LR L  + + DV W+CVTGWS  GL  +GVPM  +++ +              E WR   Q S +GYTV  +RED+            G G  L  EHGGIR V P+L+GWKS KW+SEL FLP + KG+WE++ CH+RGR    ERWA  A   W  L+  +  Y R  G T    VMQ  G  L R+  F  A  R H
Sbjct:   86 LPAGQLLARKWIVLDLGYRPTQVQYPEIAGAVDEARWSLKIAFDHGDENTKSKSLTLTLADLRPLA-QTFGDVTWNCVTGWSTKGLCFKGVPMQELVEFIREKATQEHGSKVWHEDWRWLFQSSPEGYTVPAYREDVMDGGFLAIAD--GNGDPLSIEHGGIRFVFPTLYGWKSCKWVSELAFLPKYRKGWWERVACHSRGRVAFDERWAKDAGAFWTLLSSCNMFYLRVFGDTF-APVMQISGQILARIVDFLKASLRLH 342
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BLAST of jgi.p|Trimin1|160185 vs. uniprot
Match: A0A7S2VX13_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S2VX13_9CHLO)

HSP 1 Score: 172 bits (437), Expect = 1.510e-49
Identity = 97/218 (44.50%), Postives = 127/218 (58.26%), Query Frame = 1 
Query:  133 PRGQTLARSWIVLDLGTSPSRQSYDPWSRPDDWTLRVTGLKGGHKTLT-LQQLRGLGVRQYSDVAWHCVTGWSAVGLQLEGVPMAAVLQ-ALGP--AEGWRGALQVSADGYTVNVHREDLESSDAFVCTGWGGGGALLPSEHGGIRIVIPSLFGWKSAKWLSELHFLPYH---AKGFWEKLGCHTRGRALEGERWAAGAAPVWEALTWMSSLYYRFGG 765
            PRGQ + RSWI LDLG  P   ++DPW+  D + +   G      TL  L+   G    ++S+ +WHCVTGW+   L   GV + AVL+ A G      +    Q+++DGYTV V   D   + AF+     GGG++L  EHGG R+V P+LFGWKSAK+L  +  L  +     GFWEKLGCH RGR    ERW+  AA VW  L WM++LY RFGG
Sbjct:   17 PRGQRVVRSWIKLDLGR-PIPPTHDPWALGDAFAIECIGRVSTKVTLAELKAANGGAWSEFSNHSWHCVTGWTCEALTFRGVDLDAVLRCAFGDDALASYACVYQIASDGYTVGVDSRDC--AGAFLAVE-DGGGSMLSREHGGPRLVFPALFGWKSAKYLQTIKLLERYDDDGLGFWEKLGCHRRGRWANDERWSENAAGVWNWLAWMTNLYARFGG 230
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BLAST of jgi.p|Trimin1|160185 vs. uniprot
Match: A4S439_OSTLU (Oxidored_molyb domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S439_OSTLU)

HSP 1 Score: 178 bits (452), Expect = 3.270e-48
Identity = 104/246 (42.28%), Postives = 135/246 (54.88%), Query Frame = 1 
Query:  103 DAPTAEGCVLPRGQTLARSWIVLDLGTSPSRQSYDPWSRPDDWTLRVTGLKGGHKTLTLQQLRGLGVRQYS--DVAWHCVTGWSAVGLQLEGVPMAAVLQ-ALGPAE--GWRGALQVSADGYTVNVHREDLESSDAFVCTGWGGGGALLPSEHGGIRIVIPSLFGWKSAKWLSELHFLPYHAKGFWEKLGCHTRGRALEGERWAAG-AAPVWEALTWMSSLYYRFGGYTIWVAVMQRGGAALGRVA 822
            DA  A G     GQ   + WI LDLG  P   ++DPW+  D + L  +   GG  ++++  L+      +S    +WHCVTGWS +GL   GV +   L+ A G  +  GWR   Q SADGYTV V   D E +   V       GA+L  +HGG R+V P+L+GWKSAK+LS +     +  GFWE LGCH RGR    ERW  G +A VW  L W++  YY  GG  +W+ VM  GG ALG VA
Sbjct:  354 DAQLAGGA---SGQREVQRWIKLDLGR-PVPATHDPWAEGDAFELTFSCESGGATSVSVGALKAANGGCWSAFGTSWHCVTGWSRLGLDFRGVALEVALECAFGERDVGGWRCLYQTSADGYTVGVDARDCEGAFLAVTDA---DGAMLSRDHGGPRLVFPALYGWKSAKYLSRIELKTSYENGFWENLGCHARGRWRYDERWKPGTSARVWNVLAWITDRYY-IGGERVWIWVMVYGGRALGMVA 591
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BLAST of jgi.p|Trimin1|160185 vs. uniprot
Match: A0A7S3PJ36_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJ36_9STRA)

HSP 1 Score: 162 bits (411), Expect = 4.600e-44
Identity = 94/268 (35.07%), Postives = 135/268 (50.37%), Query Frame = 1 
Query:  130 LPRGQTLARSWIVLDLGTSPSRQSY----DPWSRPDDWTLRVT-----GLKGGHKTLTLQQLRGLGVRQYSDVAWHCVTGWSAVGLQLEGVPMAAVLQALGPA---------------------------EGWRGALQVSADGYTVNVHREDLESSDAFVCTGWGGGG----ALLPSEHGGIRIVIPSLFGWKSAKWLSELHFLPYHAKGFWEKLGCHTRGRALEGERWAAGAAPVWEALTWMSSLYYRFGGYTIWVAVMQRGGAALG 813
            LP GQ  +++WIVLDLG  P+ + Y    D      +W+L  T        G    + L+ L+ +G+  Y++V W+CVTGW+   +  +GVP A ++  +                                WR   Q S +GY+V V RED  ++DAF+C  +   G     L+  EHGGIR V PSLFGWKS KW++++     + KGFWE++GCH RGR    ERWA  A+  W+ L   +S +    G +I   VMQ+ G  LG
Sbjct:   92 LPEGQIPSKTWIVLDLGKRPTEKDYNYSQDREGNIPNWSLAFTLNGSSNHNGVDVNINLKDLQEIGLHTYTNVQWNCVTGWTYSNISFQGVPFAGLIDFVEKRFRQNYDNSQNFQNSSVKDENNEAKLWDPDWRYLYQTSPEGYSVPVFRED--TADAFLCVYFKTDGDENYRLVDFEHGGIRFVFPSLFGWKSCKWVTKVDLAVEYKKGFWERIGCHARGRVKYNERWAPQASKFWKFLAGSNSTFLSVFGQSIGTFVMQKSGFYLG 357
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BLAST of jgi.p|Trimin1|160185 vs. uniprot
Match: A0A090M5K5_OSTTA (Oxidoreductase, molybdopterin-binding domain n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M5K5_OSTTA)

HSP 1 Score: 155 bits (393), Expect = 2.550e-42
Identity = 100/252 (39.68%), Postives = 136/252 (53.97%), Query Frame = 1 
Query:  112 TAEGCVL---PRGQTLARSWIVLDLGTSPSRQSYDPWSRPDDWTLRVTGLKGGHKTLTLQQLRGLGVRQYSDV---AWHCVTGWS-AVGLQLEGVPMAAVLQ-ALGPAEGWRGALQVSADGYTVNVHREDLESSDAFVCTGWGGGGALLPSEHGGIRIVIPSLFGWKSAKWLSELHFLPYHAKGFWEKLGCHTRGRALEGERWAAGAAP-VWEALTWMSSLYYRFGGYTIWVAVMQRGGAALGRVAGFAGAF 840
            T+E C +     G    + +IVLDLG  P    +DPW+  D + +     +G     +L +LR     ++++    AW+CVTGWS A GL+  GV +  VL+ A G    +    Q  ADGYT +V   DL+ +   V       G ++  EHGG R+V P+LFGWKSAK+L  +    Y   GFWEKLGCH RGR    ERWA+G +  VW AL W+++ Y  FG   IW+ VM  GG  LG +A F   F
Sbjct:   31 TSEACAVRGVAPGNRAVKKFIVLDLGR-PIPLEHDPWTSGDAFEIEFEH-QGAVVRRSLGELRSANGGKWTEFELRAWNCVTGWSFADGLKFNGVGLDVVLRCAFGENLKFECLFQTGADGYTTSVDARDLDGAFLAVTDE---SGEMVSREHGGPRLVFPTLFGWKSAKYLKSVTLRAYEG-GFWEKLGCHRRGRWALDERWASGTSSRVWTALAWLTNRYQIFGD-GIWIWVMVVGGKVLGAIASFTSLF 275
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BLAST of jgi.p|Trimin1|160185 vs. uniprot
Match: A0A835ZGT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.560e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 QLRWALDAGCPRNGWVCAAVARCGRLRLLQF 93
            QLRWALDAGCPRNGWVCAAVARCGRLRLLQF
Sbjct:    1 QLRWALDAGCPRNGWVCAAVARCGRLRLLQF 31
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160185 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZI51_9STRA2.300e-212100.00Oxidoreductase, molybdopterin-binding domain-conta... [more]
A0A7S0KHI9_MICPS2.140e-6644.03Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A8J5XY35_DIALT2.730e-6346.34Oxidored_molyb domain-containing protein n=1 Tax=D... [more]
C1EA92_MICCC4.590e-6245.28Oxidored_molyb domain-containing protein n=1 Tax=M... [more]
C1MHY3_MICPC7.510e-5844.00Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A2R5GRH4_9STRA1.300e-5141.38Oxidored_molyb domain-containing protein n=1 Tax=H... [more]
A0A7S2VX13_9CHLO1.510e-4944.50Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A4S439_OSTLU3.270e-4842.28Oxidored_molyb domain-containing protein n=1 Tax=O... [more]
A0A7S3PJ36_9STRA4.600e-4435.07Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A090M5K5_OSTTA2.550e-4239.68Oxidoreductase, molybdopterin-binding domain n=1 T... [more]

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BLAST of jgi.p|Trimin1|160185 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZGT6_9STRA1.560e-10100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_12contigContig_12:1403621..1405674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160185|e_gw1.12.157.1
DescriptionOxidoreductase molybdopterin binding domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2D5HQ@1|root,2SYKU@2759|Eukaryota
Evalue7.53e-63
Seed ortholog296587.XP_002503560.1
Hectar predicted targeting categoryother localisation
TranscriptId160507
TrackFilteredModels1
ProteinId160185
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160185gene_3831Tribonema minus UTEX_B_3156 geneContig_12 1403621..1405674 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3831_1exon_3831_1Tribonema minus UTEX_B_3156 exonContig_12 1403621..1404090 +
exon_3831_2exon_3831_2Tribonema minus UTEX_B_3156 exonContig_12 1404615..1404780 +
exon_3831_3exon_3831_3Tribonema minus UTEX_B_3156 exonContig_12 1405456..1405674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3831CDS_3831Tribonema minus UTEX_B_3156 CDSContig_12 1403621..1404090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160185Trimin1|160185|e_gw1.12.157.1Tribonema minus UTEX_B_3156 polypeptideContig_12 1403621..1405674 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3831 ID=mRNA_3831|Name=jgi.p|Trimin1|160185|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=855bp|location=Sequence derived from alignment at Contig_12:1403621..1405674+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAGGCCGAGATCAGCAAGCTGCCACCCAAGGCTCAGCGAGAGGT
GCGAAAGAAGCAGCAGCTTATGGCTCGGCAACAGCAACAACCAGCCCACG
CCGACGCACCAACAGCAGAAGGCTGCGTGCTGCCCCGCGGCCAGACGCTG
GCACGCTCATGGATAGTCTTGGATCTGGGCACGAGCCCCAGTAGGCAGTC
CTACGATCCCTGGTCGAGACCGGATGACTGGACCTTGAGAGTCACCGGCC
TGAAGGGCGGGCACAAGACGCTGACACTGCAGCAGCTGCGCGGTCTCGGT
GTGCGGCAGTACAGCGACGTCGCCTGGCACTGCGTCACCGGCTGGAGCGC
GGTGGGCCTGCAGCTGGAGGGCGTGCCGATGGCTGCTGTGCTGCAGGCGC
TGGGCCCCGCTGAGGGGTGGCGCGGGGCGCTGCAGGTGTCGGCAGACGGC
TACACCGTCAACGTGCACAGGGAGGATCTGGAGTCTTCGGACGCATTCGT
GTGCACGGGCTGGGGCGGCGGCGGAGCGCTGCTGCCATCGGAACACGGCG
GCATCCGCATTGTCATCCCGTCGCTCTTTGGCTGGAAGAGCGCCAAGTGG
CTGTCGGAGCTGCACTTCCTGCCGTATCACGCAAAGGGGTTCTGGGAGAA
GCTGGGGTGCCACACCAGGGGCAGGGCGCTGGAGGGGGAGCGCTGGGCAG
CGGGCGCCGCGCCTGTGTGGGAGGCGCTGACATGGATGTCATCGCTCTAC
TACAGGTTTGGGGGCTACACGATATGGGTGGCGGTGATGCAGAGGGGGGG
GGCTGCGCTGGGCCGCGTGGCCGGTTTCGCGGGGGCGTTCAGACGGCGAC
ACTGA
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protein sequence of jgi.p|Trimin1|160185

>Trimin1|160185|e_gw1.12.157.1 ID=Trimin1|160185|e_gw1.12.157.1|Name=jgi.p|Trimin1|160185|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=285bp
MSEAEISKLPPKAQREVRKKQQLMARQQQQPAHADAPTAEGCVLPRGQTL
ARSWIVLDLGTSPSRQSYDPWSRPDDWTLRVTGLKGGHKTLTLQQLRGLG
VRQYSDVAWHCVTGWSAVGLQLEGVPMAAVLQALGPAEGWRGALQVSADG
YTVNVHREDLESSDAFVCTGWGGGGALLPSEHGGIRIVIPSLFGWKSAKW
LSELHFLPYHAKGFWEKLGCHTRGRALEGERWAAGAAPVWEALTWMSSLY
YRFGGYTIWVAVMQRGGAALGRVAGFAGAFRRRH*
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mRNA from alignment at Contig_12:1403621..1405674+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3831 ID=mRNA_3831|Name=jgi.p|Trimin1|160185|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2054bp|location=Sequence derived from alignment at Contig_12:1403621..1405674+ (Tribonema minus UTEX_B_3156 )
ATGTCAGAGGCCGAGATCAGCAAGCTGCCACCCAAGGCTCAGCGAGAGGT
GCGAAAGAAGCAGCAGCTTATGGCTCGGCAACAGCAACAACCAGCCCACG
CCGACGCACCAACAGCAGAAGGCTGCGTGCTGCCCCGCGGCCAGACGCTG
GCACGCTCATGGATAGTCTTGGATCTGGGCACGAGCCCCAGTAGGCAGTC
CTACGATCCCTGGTCGAGACCGGATGACTGGACCTTGAGAGTCACCGGCC
TGAAGGGCGGGCACAAGACGCTGACACTGCAGCAGCTGCGCGGTCTCGGT
GTGCGGCAGTACAGCGACGTCGCCTGGCACTGCGTCACCGGCTGGAGCGC
GGTGGGCCTGCAGCTGGAGGGCGTGCCGATGGCTGCTGTGCTGCAGGCGC
TGGGCCCCGCTGAGGGGTGGCGCGGGGCGCTGCAGGTGTCGGCAGACGGC
TACACCGTCAACGTGCACAGGTGCGCACCCGCACGCCTGCTGCCGCGAGT
CCGTCTTGTGCGAGTGCATATCATATCAAGTAAAGTATGTGCTGTATGCT
GTGCCGAGATCATGATTTGCAGCGACTTGCACCTGATGCTGCGATTGCTC
CGTGGCAGGGCGATGCGAGGCACATTTCCTCAGGTGATGCAGTACACACC
TAGCGCACATCGCCACTTCCATTGATGACGCAGGTGTATCGCGCACTATT
GGATCTTTTGCAGCAGAATCATGCCCAAGGGCTGGCCATCAATCTGCGAG
CACATGTGATGAATGTGTCGTGATTGACGTGCCGCACCTCAATTGCACTT
CGTGCTTGGATTCATGTGAAGAGAATGTACCCACACCTTAGAAGCAATGC
AGAGCTTCGCTGGCTACGCTATTCATGATGACTGTGCTCGAAGATGCTGC
GCGGGGTGCAGCGCCCAGACAACCACCCTTTGGTCGCGCGCATGCTATGC
TTATTGCCAATGGTTGCCCCACTGTCTTCACGCCGCGGCGGCAGGGAGGA
TCTGGAGTCTTCGGACGCATTCGTGTGCACGGGCTGGGGCGGCGGCGGAG
CGCTGCTGCCATCGGAACACGGCGGCATCCGCATTGTCATCCCGTCGCTC
TTTGGCTGGAAGAGCGCCAAGTGGCTGTCGGAGCTGCACTTCCTGCCGTA
TCACGCAAAGGTATGCATGCTCTGTCAGTGACGACGCGTTTGCACACGCA
TTTTCGCCCCACCGGCTGGTCGCTGTGTCGAGGGCTCTGGCCCTGGGGAC
TGCGCCTGTCACCTGCGTGCTGCTGCCGGCGGTTGGTGGCGGCACCTGTT
ACATCTGTTGTAACTGTCAGCGCTCGCACGTTGAGTCGTTATACCTCAAA
GGACAAGATGGAGATTGCATGGTCTATTGTGGGTTCTATCACTGTCGCTG
GGGCCGGCGAGGGCGCCTGCGCCGTTTTTTGCTGATGGGTGTCCTTGCAC
TGCGACTGCCGCCAGTTGCTGCAGTCTGCAGTGACTGTCTGCGAGCAACT
CGATTGGTATGGCTCATCAATATCTTATTTCACTGTTCAAGTGAGGCATC
TACGTTCATCGCCGCGTTCTGCAGCGTGCCTGTAGTTCGTTTCACAACTG
CGCTGACTGGGGCTGGCTGCTTGGCGTGTGCATGCCGCCAAATGCACTGC
CACGCTCCGTCACGTGCGCACCAAGCATAGCAGAGGCTGCTGGCACCTGC
CGACATCTGGCACGCCAATTCTTTTCAGCCCAAGTCACCACCACCATACG
CAAGCACGACAACGACAACTGCAGTGAAATCTAAGCACGCGCGGCTGCCT
CCCCCCCCCGCCCCCCCCCCCATCTCGCCGCACAGGGGTTCTGGGAGAAG
CTGGGGTGCCACACCAGGGGCAGGGCGCTGGAGGGGGAGCGCTGGGCAGC
GGGCGCCGCGCCTGTGTGGGAGGCGCTGACATGGATGTCATCGCTCTACT
ACAGGTTTGGGGGCTACACGATATGGGTGGCGGTGATGCAGAGGGGGGGG
GCTGCGCTGGGCCGCGTGGCCGGTTTCGCGGGGGCGTTCAGACGGCGACA
CTGA
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Coding sequence (CDS) from alignment at Contig_12:1403621..1405674+

>mRNA_3831 ID=mRNA_3831|Name=jgi.p|Trimin1|160185|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=855bp|location=Sequence derived from alignment at Contig_12:1403621..1405674+ (Tribonema minus UTEX_B_3156 )
ATGTCAGAGGCCGAGATCAGCAAGCTGCCACCCAAGGCTCAGCGAGAGGT
GCGAAAGAAGCAGCAGCTTATGGCTCGGCAACAGCAACAACCAGCCCACG
CCGACGCACCAACAGCAGAAGGCTGCGTGCTGCCCCGCGGCCAGACGCTG
GCACGCTCATGGATAGTCTTGGATCTGGGCACGAGCCCCAGTAGGCAGTC
CTACGATCCCTGGTCGAGACCGGATGACTGGACCTTGAGAGTCACCGGCC
TGAAGGGCGGGCACAAGACGCTGACACTGCAGCAGCTGCGCGGTCTCGGT
GTGCGGCAGTACAGCGACGTCGCCTGGCACTGCGTCACCGGCTGGAGCGC
GGTGGGCCTGCAGCTGGAGGGCGTGCCGATGGCTGCTGTGCTGCAGGCGC
TGGGCCCCGCTGAGGGGTGGCGCGGGGCGCTGCAGGTGTCGGCAGACGGC
TACACCGTCAACGTGCACAGGGAGGATCTGGAGTCTTCGGACGCATTCGT
GTGCACGGGCTGGGGCGGCGGCGGAGCGCTGCTGCCATCGGAACACGGCG
GCATCCGCATTGTCATCCCGTCGCTCTTTGGCTGGAAGAGCGCCAAGTGG
CTGTCGGAGCTGCACTTCCTGCCGTATCACGCAAAGGGGTTCTGGGAGAA
GCTGGGGTGCCACACCAGGGGCAGGGCGCTGGAGGGGGAGCGCTGGGCAG
CGGGCGCCGCGCCTGTGTGGGAGGCGCTGACATGGATGTCATCGCTCTAC
TACAGGTTTGGGGGCTACACGATATGGGTGGCGGTGATGCAGAGGGGGGG
GGCTGCGCTGGGCCGCGTGGCCGGTTTCGCGGGGGCGTTCAGACGGCGAC
ACTGA
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