mRNA_382 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|54672
Unique NamemRNA_382
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|54672 vs. uniprot
Match: A0A835YXB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXB5_9STRA)

HSP 1 Score: 187 bits (476), Expect = 4.880e-58
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:   97 SAFMAGTASVARGVRRATAAPIRMAEDNPQGEEYIEKAKAWAKENSHLSDEEIEQGLNEGRHNVEAGLGSAAHVRKEGQEWAEDKVKEVLAALERNH 387
            SAFMAGTASVARGVRRATAAPIRMAEDNPQGEEYIEKAKAWAKENSHLSDEEIEQGLNEGRHNVEAGLGSAAHVRKEGQEWAEDKVKEVLAALERNH
Sbjct:   19 SAFMAGTASVARGVRRATAAPIRMAEDNPQGEEYIEKAKAWAKENSHLSDEEIEQGLNEGRHNVEAGLGSAAHVRKEGQEWAEDKVKEVLAALERNH 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|54672 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YXB5_9STRA4.880e-58100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1075664..1078279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|54672|CE54671_118
Hectar predicted targeting categorysignal peptide
TranscriptId54994
TrackFilteredModels1
ProteinId54672
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|54672gene_382Tribonema minus UTEX_B_3156 geneContig_3 1075664..1078279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|54672Trimin1|54672|CE54671_118Tribonema minus UTEX_B_3156 polypeptideContig_3 1075920..1078237 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_382_3exon_382_3Tribonema minus UTEX_B_3156 exonContig_3 1075664..1075976 -
exon_382_2exon_382_2Tribonema minus UTEX_B_3156 exonContig_3 1077644..1077822 -
exon_382_1exon_382_1Tribonema minus UTEX_B_3156 exonContig_3 1078126..1078279 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_382UTR3_382Tribonema minus UTEX_B_3156 three_prime_UTRContig_3 1075664..1075919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_382CDS_382Tribonema minus UTEX_B_3156 CDSContig_3 1078126..1078237 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_382UTR5_382Tribonema minus UTEX_B_3156 five_prime_UTRContig_3 1078238..1078279 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_382 ID=mRNA_382|Name=jgi.p|Trimin1|54672|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=646bp|location=Sequence derived from alignment at Contig_3:1075664..1078279- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCAGACCATACATCGACTCGACAACCGCCACCTGCCCTTACAATGATGAA
GCTCGTAGCCGTCGTCATCGCCTTGGCCTGCTGCCTTCTGTCGAGCAGCG
CCTTCATGGCGGGCACTGCATCAGTCGCACGGGGCGTGCGACGCGCAACA
GCAGCGCCAATCCGCATGGCTGAGGACAACCCGCAAGGAGAGGAGTACAT
CGAGAAGGCCAAGGCGTGGGCCAAGGAGAACTCTCACCTCAGCGACGAGG
AGATCGAGCAGGGGCTGAACGAGGGACGGCACAATGTGGAGGCCGGTCTG
GGCTCCGCTGCCCACGTGCGAAAGGAAGGACAGGAATGGGCGGAGGACAA
GGTGAAGGAGGTGCTGGCGGCCTTGGAGCGCAACCACTGATGCACCGACT
CATGCTCACACACTAATACTTTCAAAGTAGAAGACACATGAAGGCATTCC
AGTGCCCTGCCACCATGCAACAGCTACGGCTTAGCACAGTAGCACAAACA
CAGCAAGGCGGCAGGCACACAACGCCATATGATGAAGCGACACAGCACCA
CGCTCCCATTTTCAGCAGAGTGCATGGTATTTTGGCTGGCCGAGGTTGAC
TGATACTGATAGTTATAAATACATGTGCAGGAGAGGTGTTGATCCC
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protein sequence of jgi.p|Trimin1|54672

>Trimin1|54672|CE54671_118 ID=Trimin1|54672|CE54671_118|Name=jgi.p|Trimin1|54672|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp
MMKLVAVVIALACCLLSSSAFMAGTASVARGVRRATAAPIRMAEDNPQGE
EYIEKAKAWAKENSHLSDEEIEQGLNEGRHNVEAGLGSAAHVRKEGQEWA
EDKVKEVLAALERNH*
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mRNA from alignment at Contig_3:1075664..1078279-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_382 ID=mRNA_382|Name=jgi.p|Trimin1|54672|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2616bp|location=Sequence derived from alignment at Contig_3:1075664..1078279- (Tribonema minus UTEX_B_3156 )
CCAGACCATACATCGACTCGACAACCGCCACCTGCCCTTACAATGATGAA
GCTCGTAGCCGTCGTCATCGCCTTGGCCTGCTGCCTTCTGTCGAGCAGCG
CCTTCATGGCGGGCACTGCATCAGTCGCACGGGGCGTGCGACGCGCAACA
GCAGGTGCGCGGCAAGAGTGTCAGCAGCGTCGCGTATAGCCTGTCGACGA
CGTGGTTTTTGTAGCGAAGCGCGAGGTCCTCAAAATGGCGCCTGCTGCTC
ATGCACGCAGCCGTCGGAAGGAGAGGATTCAATTGAATCTTTGGTGTGCG
TGCCGCATTCTGTGTGCGTGCACCCACGAGGGCAGCACGCCAGACGAAAC
AACAGTGTACATCACTGTGATATGTTATCTACTTGGCTCCAATGACTGAT
GTACTTGAGCACGGTTTTGGCTGGACTAACGGAGTGTGCACTGACTGGAT
CTCACAGCGCCAATCCGCATGGCTGAGGACAACCCGCAAGGAGAGGAGTA
CATCGAGAAGGCCAAGGCGTGGGCCAAGGAGAACTCTCACCTCAGCGACG
AGGAGATCGAGCAGGGGCTGAACGAGGGACGGCACAATGTGGAGGCCGGT
CTGGGCTCCGCTGCCCACGTGCGAAAGGAAGGACAGGTGAGGCCACAACC
TTCATAGACTTATCTTTTTTCAAGTGAAATCTCAACGCGCAAAAAGCACA
AGCAGAGCCATCAGTCTTGCCAACATCGTATATCTGCTCATGGCTTGTGT
GAAGACACATAGCATAGGCAGCGCAATGCTAGTAAAATGAAAGTGAACTC
CTTTGATTCAAAGCAAACAAGATCGCTGTGAACTTGCAACAACCATTACG
TTCCCCCACACCGTGTTGTTCACCCAGTTGATTCTAGTCAGTCGAAGTTT
GTAAGCTGAAGGTGGTCATATGCAGTTATTCATCAAAATCATCGGCACCA
GTGTAGCTCTAGCTTGCGTTATTTCATGCTGTGCAAGCGCAGAACGTGAG
TTGAGGTGACGTGATGATTGCGGCCAGTGGGTGTGCTGCTTGAAGTGTGC
TTGCCTGGATGAAGTCTGGATATATGATGGTTTCACACCGTGGTCATCCA
TTCCTCAGCGCGGCAACGTGATTGCAGAGCAAGTCGAGCAACAGATGCTG
ACATAATCTGTTTTTACTGAATGGATCCGCTGTGACATGCCGCATCCTGA
AGTAGTTCATGGTTAATGTGCAGGGCACCACAAGCCGCTTCTCGACATCA
GTCACAAACGCATATGAGCGTTGCAATGCAGTGCACCTTTGCATTGGTTT
ACTTGCTGTGCACAGCTCGGCAAGGCAACAATTGTGCAAAGTGGCAGAGT
GCACTGCACAAAAACTGCTTGAAACATTTGTGGCACTTGTCAGAGGCTGT
CAGAGGCGGTGGGACAAGCCAGCAGCGCCTGCCTCCTGAATGGCTTACAA
ACTAATACATTTATGATGGGCAACTTTCACGGTTGTGGAAACAACTACCA
AATGCACCTGTTTCCAGTGTGGGTGTATATCTCATTACTGCATGCCACCT
GACCAAAAGTAGTTCTGTACTTTTATTAATTTCGCTTCGCAAGGGGCGCG
GAAAGCCCTCTCTGTGGATGTGCACTCAATGCAACATTCCTTCACCGAAG
AGAGACTCAAACGCAAACAGGCTTCCCCCTCTTCACACTACCACCAACAC
CCCACAACCAAACCCTACTTAGGGTTGCCCAGCCGTGAGGCACACTTGTC
CCGTCTTGGAAAAGATTTATGCAGGCCTGGGTCGCCTTTGACAGCGCCCA
GAACTGAGGACCATGCTGACACGTCTGAATCACGCCTCTAGGCAAAATGA
TCACTGGGCACCAGGCACTGGTGCTAAAGGTATCAATGCTGTTGCTATGA
AGAGTCCGACCCAACCCCAACACCCCCCACCCAAACCCTGATTGGTCCCC
ACTATCATGCTGCACCAAAGTGCCTAGGCTACTGCCTCTACACGACCACA
CCCACTTTAAGGCCTCCCGTGTCTCTGCCAAAATGGTCCTAACCGTGAAC
AGCTTTGTGCAGGCCTGGGCTACTGTTAGCAGCGCCCAGAACTGAGGACA
ATGGTCATGGATCACTAAGTGCCAGGCACTGGTGTACATGTGGTGAACTG
CAAAATCTTATTGCCCTTATGCTGTGTACGAGCTGATGATGCTGGTGACA
GTGTTGTGAGTGCGCATTTAATATGACTGCCTCTAATAACACTTTGCCTG
CCGTAACTGACACTTTGCTGGTCGTTGGCCCGTGCTCTGACTGGCTGCTG
CAGGAATGGGCGGAGGACAAGGTGAAGGAGGTGCTGGCGGCCTTGGAGCG
CAACCACTGATGCACCGACTCATGCTCACACACTAATACTTTCAAAGTAG
AAGACACATGAAGGCATTCCAGTGCCCTGCCACCATGCAACAGCTACGGC
TTAGCACAGTAGCACAAACACAGCAAGGCGGCAGGCACACAACGCCATAT
GATGAAGCGACACAGCACCACGCTCCCATTTTCAGCAGAGTGCATGGTAT
TTTGGCTGGCCGAGGTTGACTGATACTGATAGTTATAAATACATGTGCAG
GAGAGGTGTTGATCCC
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Coding sequence (CDS) from alignment at Contig_3:1075664..1078279-

>mRNA_382 ID=mRNA_382|Name=jgi.p|Trimin1|54672|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_3:1075664..1078279- (Tribonema minus UTEX_B_3156 )
ATGATGAAGCTCGTAGCCGTCGTCATCGCCTTGGCCTGCTGCCTTCTGTC
GAGCAGCGCCTTCATGGCGGGCACTGCATCAGTCGCACGGGGCGTGCGAC
GCGCAACAGCAGCGCCAATCCGCATGGCTGAGGACAACCCGCAAGGAGAG
GAGTACATCGAGAAGGCCAAGGCGTGGGCCAAGGAGAACTCTCACCTCAG
CGACGAGGAGATCGAGCAGGGGCTGAACGAGGGACGGCACAATGTGGAGG
CCGGTCTGGGCTCCGCTGCCCACGTGCGAAAGGAAGGACAGGAATGGGCG
GAGGACAAGGTGAAGGAGGTGCTGGCGGCCTTGGAGCGCAACCACTGA
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