Homology
BLAST of jgi.p|Trimin1|12367 vs. uniprot
Match: A0A836CMR4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMR4_9STRA) HSP 1 Score: 320 bits (820), Expect = 1.000e-105 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 2 Query: 74 MRQGRFLALAGCALAPQLAPVESFLVPHVAHTSVVMHPSRAEPKARLPHHQLQSSWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGRRKGVFGLGYSTLALVATAFMFPRVVVGLLEAALVALFVGPLVLTLIFRVVVSANTLRKPCPACGATVQSAKIGNAQCMSCGTILTVENGAFTRATAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAQANTYSTGXXXXXXXXVIDVDAVVESDD 817
MRQGRFLALAGCALAPQLAPVESFLVPHVAHTSVVMHPSRAEPKARLPHHQLQSSWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGRRKGVFGLGYSTLALVATAFMFPRVVVGLLEAALVALFVGPLVLTLIFRVVVSANTLRKPCPACGATVQSAKIGNAQCMSCGTILTVENGAFTRATAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAQANTYSTGXXXXXXXXVIDVDAVVESDD
Sbjct: 1 MRQGRFLALAGCALAPQLAPVESFLVPHVAHTSVVMHPSRAEPKARLPHHQLQSSWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGRRKGVFGLGYSTLALVATAFMFPRVVVGLLEAALVALFVGPLVLTLIFRVVVSANTLRKPCPACGATVQSAKIGNAQCMSCGTILTVENGAFTRATAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAQANTYSTGXXXXXXXXVIDVDAVVESDD 248
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|12367|CE12366_133 |
| Hectar predicted targeting category | signal peptide |
| TranscriptId | 12689 |
| Track | FilteredModels1 |
| ProteinId | 12367 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3821 ID=mRNA_3821|Name=jgi.p|Trimin1|12367|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1149bp|location=Sequence derived from alignment at Contig_12:1312731..1316464+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATTCAGCGGTGATCGAGAGGAACAGCGCGCGGAGGGCGCTGTGCATCCGA
CGCTCTCGGGCAGAACAACAAGGATGCGGCAGGGCAGGTTCTTAGCTCTG
GCAGGCTGTGCGCTCGCCCCGCAGCTGGCGCCGGTCGAGAGCTTTCTTGT
CCCTCATGTGGCACATACCAGTGTCGTGATGCATCCCTCCAGAGCAGAGC
CCAAAGCCAGGCTGCCGCACCATCAGCTACAGAGCTCGTGGGCACCTCAA
CGGCGGCTGGGTCATCACGACTGCAGATCGGCCAACCGGAGCAGTCGCAG
GGTCACCGTCACAGCTGCCACCAAATATGGGCGCAGCAGTAGGCGCACTG
GCAGGAGAAAAGGAGTCTTTGGGCTGGGCTACAGCACGCTGGCGCTCGTG
GCGACGGCGTTCATGTTCCCGCGGGTGGTGGTGGGGCTGCTGGAGGCGGC
GCTGGTGGCGCTGTTCGTGGGGCCCCTTGTGCTGACTCTGATATTCAGGG
TTGTGGTGAGCGCTAACACGCTGCGGAAGCCGTGTCCAGCCTGCGGCGCG
ACCGTCCAGAGTGCCAAGATCGGCAACGCTCAGTGCATGTCTTGCGGAAC
GATCCTCACAGTGGAGAACGGCGCGTTCACACGCGCTACTGCGGCGGCGT
CATCAGCAGCGGCGTATCGGCGCAGCGGCGGCAGCAGCATGTACCAGCGC
GCTGCTGCCGCAGCCGCCGCCGCCGCGCCGGCGCAGGCCAATACTTACAG
TACCGGCAATACGTATAGTACTGGCGGCACCGTCATTGACGTGGATGCTG
TGGTGGAGTCCGATGATTGAGGGCAGTGCAAGCGCAGGTTACATACAGGC
AGGGGATTTTACGGGGAAGGGGGGCGGGGGGGGGCTGGCAAGCAGCTTCT
CTCAAGGGAGCACACAGGGCTGTCTCCCTCCCATTCGTGCTGCATACGGG
GGTTCATTGTACCAGTACAGAGTACACAACACCTGAGAGGTCATTCAGCA
TCCGTGTCACACAGGCAGCATACTAGAAATGTAGTGGAAGGCGAGCTGAC
CACGCTCACTTGTGACTGGCAGCAGATCAACCCAACAGCACATGAGGGCA
GCAATGCGCACACCTTTCGTATCATAATGGCATCCGTGGTTTAGACTCC back to topprotein sequence of jgi.p|Trimin1|12367 >Trimin1|12367|CE12366_133 ID=Trimin1|12367|CE12366_133|Name=jgi.p|Trimin1|12367|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=249bp
MRQGRFLALAGCALAPQLAPVESFLVPHVAHTSVVMHPSRAEPKARLPHH
QLQSSWAPQRRLGHHDCRSANRSSRRVTVTAATKYGRSSRRTGRRKGVFG
LGYSTLALVATAFMFPRVVVGLLEAALVALFVGPLVLTLIFRVVVSANTL
RKPCPACGATVQSAKIGNAQCMSCGTILTVENGAFTRATAAASSAAAYRR
SGGSSMYQRAAAAAAAAAPAQANTYSTGNTYSTGGTVIDVDAVVESDD* back to topmRNA from alignment at Contig_12:1312731..1316464+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3821 ID=mRNA_3821|Name=jgi.p|Trimin1|12367|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3734bp|location=Sequence derived from alignment at Contig_12:1312731..1316464+ (Tribonema minus UTEX_B_3156 )
ATTCAGCGGTGATCGAGAGGAACAGCGCGCGGAGGGCGCTGTGCATCCGA
CGCTCTCGGGCAGAACAACAAGGATGCGGCAGGGCAGGTTCTTAGCTCTG
GCAGGCTGTGCGCTCGCCCCGCAGCTGGCGCCGGTCGAGAGCTTTCTTGT
CCCTCATGTGGCACATACCAGTGTCGTGATGCATCCCTCCAGAGCAGAGC
CCAAAGCCAGGCTGCCGCACCATCAGCTACAGAGCTCGTGGGCACCTCAA
CGGCGGCTGGGTCATCACGACTGCAGATCGGCCAACCGGAGCAGTCGCAG
GGTCACCGTCACAGCTGCCACCAAATATGGGCGCAGCAGTAGGCGGTAAG
TTGGCGCCCCGGTTCGTCCCTCGGCTGTCAGGTTCAAAGATCCGGATCTT
TTTCGGGCTCGGCTGATTGTGTCGCGCTGCGCAGAAACTACTGTTTCAAG
ACCAATGCACACAATGCATATCATTGAATCAGAAACTACTGTTTCAAGAC
CAATGCACACAATGCATATCATTGAATCATCGAAATCATATATAGCACTG
CTTTGCTGCGGCCTTCGGCAGCTTCCATAGTGTGCATCCAGTCGGCAACC
GCGACATTTCAATCGACAGGCATTACTTGCCCCCCCTAGATCCCTCTATG
CTGACACGTTCGTCTGGTCGAGCAGCAGTTCACTAGCATTCAGAAATCTC
GATGCTAAGGTACAGTGCATGCGGCTTGCAGTCATGTTGGTGCATGTCGC
AAAATTGCGGTACAGCGCTGGCCAACCAAATACAACATCAATGTTGAAGT
TATGCAATGCACGCTGCTCTGCCATGCGCCGCTCGTTGCATACAGCACTG
GCAGGAGAAAAGGAGTCTTTGGGCTGGGCTACAGCACGCTGGCGCTCGTG
GCGACGGCGTTCATGTTCCCGCGGGTGGTGGTGGGGCTGCTGGAGGCGGC
GCTGGTGGCGCTGTTCGTGGGGCCCCTTGTGCTGACTCTGATATTCAGGG
TTGTGGTGAGCGCTAACACGGTGAGCGACGCCTCGTTATTGGTGATCAAA
TTATATATCAGTGAAATGGTATCAGGCGGCGCGTCTCGCTGGCGTTGTTT
GGTTTTGCTTTGGTCTACCTTGCAGGGGGAGGTGTGCGGTACTCATACAT
GCGTGTGAGCGCGGTTTGCAGACATGCGGTGGCAGTCGTGGACCCGCCAA
TTGGTCAGTCTCGGATTCAATTTGGCACATTGCGAAGAGGACATGCAGAT
GCGCCGGCAGTGTCGAGCGCTGCCCTGTTGAGCACTGCCACAGTTGCCGA
AGCTGGAACCATTTTTAAAGGCACCATACGCTTTACCCGGTACCTTAGTC
TGATGATGTTAATGTTATTCTCACGGCGGCCTGGCATCGCAGCTCTTGCG
GCCTTGAAGTTCAACATCACAGTTCACAACATGTTGGACACCAATGAAGG
CAGTCACAAGCACTATGCTCAGGCGCTCTGCTGCGCTGGTGAATGTGATA
AGCAGGTATGCCAACACGCAGTGCAGGGGAACAAAAGGTAGAAGCGCCGC
AGGCCGCCCGCAGGCGCCAGTGGAGGCGCCGCGAGACTAGAATCGCGAAC
AGTACTATTTGCCAGCGAATCACGAGAACCTAACTGTAACATCTGTCACC
AACGAGTAGCCGCAAGTACGCAACAATGCACCATGCAACCGATGAGTGCT
GATACTAACCATACTCAAGAGTACTGATACTAAACTACACAAGAGTACCA
GTTAGGTCCCTTATTCCAACGGTGAACGATATATGCGCTGGCGCTACGAT
GTTGACAGCGCAAGCAATGACTGTTGCCTATTTTAAGTAGGCGACTCTCC
ACCTGAATCTGTCTCTGTGGTCTGACGCCAATGCTTTACACAGAAGACAG
TATAGGGAGCCTGTCTGGATGGTCTGTGTGCCCTCCTGAGGTCTCTGAAG
GCAGAAGCTAAGACGAGCGCTGACGCTCTGTGCATGCATACATGCATACT
GCAGTCCATCTGCGCTGGAGTGTCTGTATGTACCGCCGTGTTCAGTATTC
AAGCCACGGCTTTTTCTGAGTTGTTAGTAGTTGCACACCACCCTGCAAGA
GCTCGCAGAGACTGAGCCGCTGTTGAATGACAGTACGTGTTCAACATGGT
ACAACACCATGACCATGCCTCTGGTATAGCAGTCTGTCTGTGATTCTTTC
CGCCAGTGTTGCATGCGATTTGTACGCTTTTGCGACTCGTTCCTTGTTGC
TGCGCCGTGCAAGCTGGCGCTCAGCAGTCGGCGCGGGCCTCTTTGTGCGT
TGTTACCCTAACAGTAACCTAACCTTTGACATGTTCTCGTCTTCATGTTA
GGAATGCGACTGCGCTGACCATGTTCTCCCTGTGTGTTGTTGTTGTGTGT
GTCCGCATGTCCTGCCGGCCACGCAACAGCTGCGGAAGCCGTGTCCAGGT
TCGTACTTCAAGCGCTTTTCACAAACTTCAACTATGTGGCTCTTATGCGT
TTGTTTTCGCCTGTCGATTGGCGTCCACGAGGCATCGCTGCCATTATTGG
TTTCCACCCGTCTCTGCACAGCACACGACCACCTATGCATGTCCTCGAGG
ACGGCCTGCATGCAGAGTACAGTGAAGGTAGAGAAGTAGAGTACACTACA
GTGCAGTCCAGGGGGCTGTGTGTACGGTTGGTGGTCCCGCAGCTGTGACA
TTGCTCAGCAGAGACTCTCAGTCCGCACAGTGCGTCCTGCAGCTGCCCTG
GTGTTGACTTGCAGCCAAGGGAAAGGCCGGGGCAGGTGTACTGTTGCCAA
CATGCTGCGGTTGTGAGTTTCACAATGCTGCCATCACGCAGTGCCATGCG
TCGCAGTGCTCCGGATTTCAAGCTTGCATCACCGGTGCTTGTGGTGTGCT
TCATGGTCGTGTGCAGCGCTGTTGCTTCTGGAGGTTTGTGTGTCAGTGTG
CCCTCATCATCGCTTTCTTTCCCCTTCACAACCATTTACACTTCATGTGC
CCTAATTGCCCCCCCCTCATCATTGCTTCCTTTCCCCTTCACAACCATTC
ACACTTCATGTGCCACAATGCACTAATTGCCCCCTCTCCCCCCCCCCCCT
TCCCTCCATGCACATCTGCAACAGCCTGCGGCGCGACCGTCCAGAGTGCC
AAGATCGGCAACGCTCAGTGCATGTCTTGCGGAACGATCCTCACAGTGGA
GAACGGCGCGTTCACACGCGCTACTGCGGCGGCGTCATCAGCAGCGGCGT
ATCGGCGCAGCGGCGGCAGCAGCATGTACCAGCGCGCTGCTGCCGCAGCC
GCCGCCGCCGCGCCGGCGCAGGCCAATACTTACAGTACCGGCAATACGTA
TAGTACTGGCGGCACCGTCATTGACGTGGATGCTGTGGTGGAGTCCGATG
ATTGAGGGCAGTGCAAGCGCAGGTTACATACAGGCAGGGGATTTTACGGG
GAAGGGGGGCGGGGGGGGGCTGGCAAGCAGCTTCTCTCAAGGGAGCACAC
AGGGCTGTCTCCCTCCCATTCGTGCTGCATACGGGGGTTCATTGTACCAG
TACAGAGTACACAACACCTGAGAGGTCATTCAGCATCCGTGTCACACAGG
CAGCATACTAGAAATGTAGTGGAAGGCGAGCTGACCACGCTCACTTGTGA
CTGGCAGCAGATCAACCCAACAGCACATGAGGGCAGCAATGCGCACACCT
TTCGTATCATAATGGCATCCGTGGTTTAGACTCC back to topCoding sequence (CDS) from alignment at Contig_12:1312731..1316464+ >mRNA_3821 ID=mRNA_3821|Name=jgi.p|Trimin1|12367|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=747bp|location=Sequence derived from alignment at Contig_12:1312731..1316464+ (Tribonema minus UTEX_B_3156 )
ATGCGGCAGGGCAGGTTCTTAGCTCTGGCAGGCTGTGCGCTCGCCCCGCA
GCTGGCGCCGGTCGAGAGCTTTCTTGTCCCTCATGTGGCACATACCAGTG
TCGTGATGCATCCCTCCAGAGCAGAGCCCAAAGCCAGGCTGCCGCACCAT
CAGCTACAGAGCTCGTGGGCACCTCAACGGCGGCTGGGTCATCACGACTG
CAGATCGGCCAACCGGAGCAGTCGCAGGGTCACCGTCACAGCTGCCACCA
AATATGGGCGCAGCAGTAGGCGCACTGGCAGGAGAAAAGGAGTCTTTGGG
CTGGGCTACAGCACGCTGGCGCTCGTGGCGACGGCGTTCATGTTCCCGCG
GGTGGTGGTGGGGCTGCTGGAGGCGGCGCTGGTGGCGCTGTTCGTGGGGC
CCCTTGTGCTGACTCTGATATTCAGGGTTGTGGTGAGCGCTAACACGCTG
CGGAAGCCGTGTCCAGCCTGCGGCGCGACCGTCCAGAGTGCCAAGATCGG
CAACGCTCAGTGCATGTCTTGCGGAACGATCCTCACAGTGGAGAACGGCG
CGTTCACACGCGCTACTGCGGCGGCGTCATCAGCAGCGGCGTATCGGCGC
AGCGGCGGCAGCAGCATGTACCAGCGCGCTGCTGCCGCAGCCGCCGCCGC
CGCGCCGGCGCAGGCCAATACTTACAGTACCGGCAATACGTATAGTACTG
GCGGCACCGTCATTGACGTGGATGCTGTGGTGGAGTCCGATGATTGA back to top
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