mRNA_3821 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|12367
Unique Name	mRNA_3821
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|12367 vs. uniprot
Match: A0A836CMR4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMR4_9STRA)

HSP 1 Score: 320 bits (820), Expect = 1.000e-105
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 2

Query:   74 MRQGRFLALAGCALAPQLAPVESFLVPHVAHTSVVMHPSRAEPKARLPHHQLQSSWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGRRKGVFGLGYSTLALVATAFMFPRVVVGLLEAALVALFVGPLVLTLIFRVVVSANTLRKPCPACGATVQSAKIGNAQCMSCGTILTVENGAFTRATAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAQANTYSTGXXXXXXXXVIDVDAVVESDD 817
            MRQGRFLALAGCALAPQLAPVESFLVPHVAHTSVVMHPSRAEPKARLPHHQLQSSWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGRRKGVFGLGYSTLALVATAFMFPRVVVGLLEAALVALFVGPLVLTLIFRVVVSANTLRKPCPACGATVQSAKIGNAQCMSCGTILTVENGAFTRATAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAQANTYSTGXXXXXXXXVIDVDAVVESDD
Sbjct:    1 MRQGRFLALAGCALAPQLAPVESFLVPHVAHTSVVMHPSRAEPKARLPHHQLQSSWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTGRRKGVFGLGYSTLALVATAFMFPRVVVGLLEAALVALFVGPLVLTLIFRVVVSANTLRKPCPACGATVQSAKIGNAQCMSCGTILTVENGAFTRATAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAQANTYSTGXXXXXXXXVIDVDAVVESDD 248

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|12367 vs. uniprot

BLAST of jgi.p|Trimin1|12367 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CMR4_9STRA	1.000e-105	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_12	contig	Contig_12:1312731..1316464 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|12367\|CE12366_133
Hectar predicted targeting category	signal peptide
TranscriptId	12689
Track	FilteredModels1
ProteinId	12367

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|12367	gene_3821	Tribonema minus UTEX_B_3156	gene	Contig_12 1312731..1316464 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|12367	Trimin1\|12367\|CE12366_133	Tribonema minus UTEX_B_3156	polypeptide	Contig_12 1312804..1316135 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3821_1	exon_3821_1	Tribonema minus UTEX_B_3156	exon	Contig_12 1312731..1313075 +
exon_3821_2	exon_3821_2	Tribonema minus UTEX_B_3156	exon	Contig_12 1313576..1313750 +
exon_3821_3	exon_3821_3	Tribonema minus UTEX_B_3156	exon	Contig_12 1315160..1315178 +
exon_3821_4	exon_3821_4	Tribonema minus UTEX_B_3156	exon	Contig_12 1315855..1316464 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_3821	UTR5_3821	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_12 1312731..1312803 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3821	CDS_3821	Tribonema minus UTEX_B_3156	CDS	Contig_12 1312804..1313075 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_3821	UTR3_3821	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_12 1316136..1316464 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_12:1312731..1316464+
coding sequence from alignment at Contig_12:1312731..1316464+

spliced messenger RNA

>mRNA_3821 ID=mRNA_3821|Name=jgi.p|Trimin1|12367|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1149bp|location=Sequence derived from alignment at Contig_12:1312731..1316464+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATTCAGCGGTGATCGAGAGGAACAGCGCGCGGAGGGCGCTGTGCATCCGA
CGCTCTCGGGCAGAACAACAAGGATGCGGCAGGGCAGGTTCTTAGCTCTG
GCAGGCTGTGCGCTCGCCCCGCAGCTGGCGCCGGTCGAGAGCTTTCTTGT
CCCTCATGTGGCACATACCAGTGTCGTGATGCATCCCTCCAGAGCAGAGC
CCAAAGCCAGGCTGCCGCACCATCAGCTACAGAGCTCGTGGGCACCTCAA
CGGCGGCTGGGTCATCACGACTGCAGATCGGCCAACCGGAGCAGTCGCAG
GGTCACCGTCACAGCTGCCACCAAATATGGGCGCAGCAGTAGGCGCACTG
GCAGGAGAAAAGGAGTCTTTGGGCTGGGCTACAGCACGCTGGCGCTCGTG
GCGACGGCGTTCATGTTCCCGCGGGTGGTGGTGGGGCTGCTGGAGGCGGC
GCTGGTGGCGCTGTTCGTGGGGCCCCTTGTGCTGACTCTGATATTCAGGG
TTGTGGTGAGCGCTAACACGCTGCGGAAGCCGTGTCCAGCCTGCGGCGCG
ACCGTCCAGAGTGCCAAGATCGGCAACGCTCAGTGCATGTCTTGCGGAAC
GATCCTCACAGTGGAGAACGGCGCGTTCACACGCGCTACTGCGGCGGCGT
CATCAGCAGCGGCGTATCGGCGCAGCGGCGGCAGCAGCATGTACCAGCGC
GCTGCTGCCGCAGCCGCCGCCGCCGCGCCGGCGCAGGCCAATACTTACAG
TACCGGCAATACGTATAGTACTGGCGGCACCGTCATTGACGTGGATGCTG
TGGTGGAGTCCGATGATTGAGGGCAGTGCAAGCGCAGGTTACATACAGGC
AGGGGATTTTACGGGGAAGGGGGGCGGGGGGGGGCTGGCAAGCAGCTTCT
CTCAAGGGAGCACACAGGGCTGTCTCCCTCCCATTCGTGCTGCATACGGG
GGTTCATTGTACCAGTACAGAGTACACAACACCTGAGAGGTCATTCAGCA
TCCGTGTCACACAGGCAGCATACTAGAAATGTAGTGGAAGGCGAGCTGAC
CACGCTCACTTGTGACTGGCAGCAGATCAACCCAACAGCACATGAGGGCA
GCAATGCGCACACCTTTCGTATCATAATGGCATCCGTGGTTTAGACTCC

protein sequence of jgi.p|Trimin1|12367

>Trimin1|12367|CE12366_133 ID=Trimin1|12367|CE12366_133|Name=jgi.p|Trimin1|12367|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=249bp
MRQGRFLALAGCALAPQLAPVESFLVPHVAHTSVVMHPSRAEPKARLPHH
QLQSSWAPQRRLGHHDCRSANRSSRRVTVTAATKYGRSSRRTGRRKGVFG
LGYSTLALVATAFMFPRVVVGLLEAALVALFVGPLVLTLIFRVVVSANTL
RKPCPACGATVQSAKIGNAQCMSCGTILTVENGAFTRATAAASSAAAYRR
SGGSSMYQRAAAAAAAAAPAQANTYSTGNTYSTGGTVIDVDAVVESDD*

mRNA from alignment at Contig_12:1312731..1316464+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3821 ID=mRNA_3821|Name=jgi.p|Trimin1|12367|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3734bp|location=Sequence derived from alignment at Contig_12:1312731..1316464+ (Tribonema minus UTEX_B_3156 )
ATTCAGCGGTGATCGAGAGGAACAGCGCGCGGAGGGCGCTGTGCATCCGA
CGCTCTCGGGCAGAACAACAAGGATGCGGCAGGGCAGGTTCTTAGCTCTG
GCAGGCTGTGCGCTCGCCCCGCAGCTGGCGCCGGTCGAGAGCTTTCTTGT
CCCTCATGTGGCACATACCAGTGTCGTGATGCATCCCTCCAGAGCAGAGC
CCAAAGCCAGGCTGCCGCACCATCAGCTACAGAGCTCGTGGGCACCTCAA
CGGCGGCTGGGTCATCACGACTGCAGATCGGCCAACCGGAGCAGTCGCAG
GGTCACCGTCACAGCTGCCACCAAATATGGGCGCAGCAGTAGGCGGTAAG
TTGGCGCCCCGGTTCGTCCCTCGGCTGTCAGGTTCAAAGATCCGGATCTT
TTTCGGGCTCGGCTGATTGTGTCGCGCTGCGCAGAAACTACTGTTTCAAG
ACCAATGCACACAATGCATATCATTGAATCAGAAACTACTGTTTCAAGAC
CAATGCACACAATGCATATCATTGAATCATCGAAATCATATATAGCACTG
CTTTGCTGCGGCCTTCGGCAGCTTCCATAGTGTGCATCCAGTCGGCAACC
GCGACATTTCAATCGACAGGCATTACTTGCCCCCCCTAGATCCCTCTATG
CTGACACGTTCGTCTGGTCGAGCAGCAGTTCACTAGCATTCAGAAATCTC
GATGCTAAGGTACAGTGCATGCGGCTTGCAGTCATGTTGGTGCATGTCGC
AAAATTGCGGTACAGCGCTGGCCAACCAAATACAACATCAATGTTGAAGT
TATGCAATGCACGCTGCTCTGCCATGCGCCGCTCGTTGCATACAGCACTG
GCAGGAGAAAAGGAGTCTTTGGGCTGGGCTACAGCACGCTGGCGCTCGTG
GCGACGGCGTTCATGTTCCCGCGGGTGGTGGTGGGGCTGCTGGAGGCGGC
GCTGGTGGCGCTGTTCGTGGGGCCCCTTGTGCTGACTCTGATATTCAGGG
TTGTGGTGAGCGCTAACACGGTGAGCGACGCCTCGTTATTGGTGATCAAA
TTATATATCAGTGAAATGGTATCAGGCGGCGCGTCTCGCTGGCGTTGTTT
GGTTTTGCTTTGGTCTACCTTGCAGGGGGAGGTGTGCGGTACTCATACAT
GCGTGTGAGCGCGGTTTGCAGACATGCGGTGGCAGTCGTGGACCCGCCAA
TTGGTCAGTCTCGGATTCAATTTGGCACATTGCGAAGAGGACATGCAGAT
GCGCCGGCAGTGTCGAGCGCTGCCCTGTTGAGCACTGCCACAGTTGCCGA
AGCTGGAACCATTTTTAAAGGCACCATACGCTTTACCCGGTACCTTAGTC
TGATGATGTTAATGTTATTCTCACGGCGGCCTGGCATCGCAGCTCTTGCG
GCCTTGAAGTTCAACATCACAGTTCACAACATGTTGGACACCAATGAAGG
CAGTCACAAGCACTATGCTCAGGCGCTCTGCTGCGCTGGTGAATGTGATA
AGCAGGTATGCCAACACGCAGTGCAGGGGAACAAAAGGTAGAAGCGCCGC
AGGCCGCCCGCAGGCGCCAGTGGAGGCGCCGCGAGACTAGAATCGCGAAC
AGTACTATTTGCCAGCGAATCACGAGAACCTAACTGTAACATCTGTCACC
AACGAGTAGCCGCAAGTACGCAACAATGCACCATGCAACCGATGAGTGCT
GATACTAACCATACTCAAGAGTACTGATACTAAACTACACAAGAGTACCA
GTTAGGTCCCTTATTCCAACGGTGAACGATATATGCGCTGGCGCTACGAT
GTTGACAGCGCAAGCAATGACTGTTGCCTATTTTAAGTAGGCGACTCTCC
ACCTGAATCTGTCTCTGTGGTCTGACGCCAATGCTTTACACAGAAGACAG
TATAGGGAGCCTGTCTGGATGGTCTGTGTGCCCTCCTGAGGTCTCTGAAG
GCAGAAGCTAAGACGAGCGCTGACGCTCTGTGCATGCATACATGCATACT
GCAGTCCATCTGCGCTGGAGTGTCTGTATGTACCGCCGTGTTCAGTATTC
AAGCCACGGCTTTTTCTGAGTTGTTAGTAGTTGCACACCACCCTGCAAGA
GCTCGCAGAGACTGAGCCGCTGTTGAATGACAGTACGTGTTCAACATGGT
ACAACACCATGACCATGCCTCTGGTATAGCAGTCTGTCTGTGATTCTTTC
CGCCAGTGTTGCATGCGATTTGTACGCTTTTGCGACTCGTTCCTTGTTGC
TGCGCCGTGCAAGCTGGCGCTCAGCAGTCGGCGCGGGCCTCTTTGTGCGT
TGTTACCCTAACAGTAACCTAACCTTTGACATGTTCTCGTCTTCATGTTA
GGAATGCGACTGCGCTGACCATGTTCTCCCTGTGTGTTGTTGTTGTGTGT
GTCCGCATGTCCTGCCGGCCACGCAACAGCTGCGGAAGCCGTGTCCAGGT
TCGTACTTCAAGCGCTTTTCACAAACTTCAACTATGTGGCTCTTATGCGT
TTGTTTTCGCCTGTCGATTGGCGTCCACGAGGCATCGCTGCCATTATTGG
TTTCCACCCGTCTCTGCACAGCACACGACCACCTATGCATGTCCTCGAGG
ACGGCCTGCATGCAGAGTACAGTGAAGGTAGAGAAGTAGAGTACACTACA
GTGCAGTCCAGGGGGCTGTGTGTACGGTTGGTGGTCCCGCAGCTGTGACA
TTGCTCAGCAGAGACTCTCAGTCCGCACAGTGCGTCCTGCAGCTGCCCTG
GTGTTGACTTGCAGCCAAGGGAAAGGCCGGGGCAGGTGTACTGTTGCCAA
CATGCTGCGGTTGTGAGTTTCACAATGCTGCCATCACGCAGTGCCATGCG
TCGCAGTGCTCCGGATTTCAAGCTTGCATCACCGGTGCTTGTGGTGTGCT
TCATGGTCGTGTGCAGCGCTGTTGCTTCTGGAGGTTTGTGTGTCAGTGTG
CCCTCATCATCGCTTTCTTTCCCCTTCACAACCATTTACACTTCATGTGC
CCTAATTGCCCCCCCCTCATCATTGCTTCCTTTCCCCTTCACAACCATTC
ACACTTCATGTGCCACAATGCACTAATTGCCCCCTCTCCCCCCCCCCCCT
TCCCTCCATGCACATCTGCAACAGCCTGCGGCGCGACCGTCCAGAGTGCC
AAGATCGGCAACGCTCAGTGCATGTCTTGCGGAACGATCCTCACAGTGGA
GAACGGCGCGTTCACACGCGCTACTGCGGCGGCGTCATCAGCAGCGGCGT
ATCGGCGCAGCGGCGGCAGCAGCATGTACCAGCGCGCTGCTGCCGCAGCC
GCCGCCGCCGCGCCGGCGCAGGCCAATACTTACAGTACCGGCAATACGTA
TAGTACTGGCGGCACCGTCATTGACGTGGATGCTGTGGTGGAGTCCGATG
ATTGAGGGCAGTGCAAGCGCAGGTTACATACAGGCAGGGGATTTTACGGG
GAAGGGGGGCGGGGGGGGGCTGGCAAGCAGCTTCTCTCAAGGGAGCACAC
AGGGCTGTCTCCCTCCCATTCGTGCTGCATACGGGGGTTCATTGTACCAG
TACAGAGTACACAACACCTGAGAGGTCATTCAGCATCCGTGTCACACAGG
CAGCATACTAGAAATGTAGTGGAAGGCGAGCTGACCACGCTCACTTGTGA
CTGGCAGCAGATCAACCCAACAGCACATGAGGGCAGCAATGCGCACACCT
TTCGTATCATAATGGCATCCGTGGTTTAGACTCC

Coding sequence (CDS) from alignment at Contig_12:1312731..1316464+

>mRNA_3821 ID=mRNA_3821|Name=jgi.p|Trimin1|12367|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=747bp|location=Sequence derived from alignment at Contig_12:1312731..1316464+ (Tribonema minus UTEX_B_3156 )
ATGCGGCAGGGCAGGTTCTTAGCTCTGGCAGGCTGTGCGCTCGCCCCGCA
GCTGGCGCCGGTCGAGAGCTTTCTTGTCCCTCATGTGGCACATACCAGTG
TCGTGATGCATCCCTCCAGAGCAGAGCCCAAAGCCAGGCTGCCGCACCAT
CAGCTACAGAGCTCGTGGGCACCTCAACGGCGGCTGGGTCATCACGACTG
CAGATCGGCCAACCGGAGCAGTCGCAGGGTCACCGTCACAGCTGCCACCA
AATATGGGCGCAGCAGTAGGCGCACTGGCAGGAGAAAAGGAGTCTTTGGG
CTGGGCTACAGCACGCTGGCGCTCGTGGCGACGGCGTTCATGTTCCCGCG
GGTGGTGGTGGGGCTGCTGGAGGCGGCGCTGGTGGCGCTGTTCGTGGGGC
CCCTTGTGCTGACTCTGATATTCAGGGTTGTGGTGAGCGCTAACACGCTG
CGGAAGCCGTGTCCAGCCTGCGGCGCGACCGTCCAGAGTGCCAAGATCGG
CAACGCTCAGTGCATGTCTTGCGGAACGATCCTCACAGTGGAGAACGGCG
CGTTCACACGCGCTACTGCGGCGGCGTCATCAGCAGCGGCGTATCGGCGC
AGCGGCGGCAGCAGCATGTACCAGCGCGCTGCTGCCGCAGCCGCCGCCGC
CGCGCCGGCGCAGGCCAATACTTACAGTACCGGCAATACGTATAGTACTG
GCGGCACCGTCATTGACGTGGATGCTGTGGTGGAGTCCGATGATTGA