mRNA_381 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|151688
Unique Name	mRNA_381
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|151688 vs. uniprot
Match: A0A835YXD7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.320e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1

Query:    1 LTELNLEECYGLVHLPHSIGDLMSLT 78
            LTELNLEECYGLVHLPHSIGDLMSLT
Sbjct:    1 LTELNLEECYGLVHLPHSIGDLMSLT 26

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|151688 vs. uniprot

BLAST of jgi.p|Trimin1|151688 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YXD7_9STRA	2.320e-5	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_3	contig	Contig_3:1067964..1072931 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|151688\|gw1.3.426.1
Hectar predicted targeting category	other localisation
TranscriptId	152010
Track	FilteredModels1
ProteinId	151688

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|151688	gene_381	Tribonema minus UTEX_B_3156	gene	Contig_3 1067964..1072931 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|151688	Trimin1\|151688\|gw1.3.426.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_3 1067964..1072931 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_381_4	exon_381_4	Tribonema minus UTEX_B_3156	exon	Contig_3 1067964..1068381 -
exon_381_3	exon_381_3	Tribonema minus UTEX_B_3156	exon	Contig_3 1070045..1070292 -
exon_381_2	exon_381_2	Tribonema minus UTEX_B_3156	exon	Contig_3 1072107..1072512 -
exon_381_1	exon_381_1	Tribonema minus UTEX_B_3156	exon	Contig_3 1072789..1072931 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_381	CDS_381	Tribonema minus UTEX_B_3156	CDS	Contig_3 1072789..1072931 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_3:1067964..1072931-
coding sequence from alignment at Contig_3:1067964..1072931-

spliced messenger RNA

>mRNA_381 ID=mRNA_381|Name=jgi.p|Trimin1|151688|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1215bp|location=Sequence derived from alignment at Contig_3:1067964..1072931- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTGACGGAGCTCAATCTGGAGGAATGCTACGGGCTAGTTCACCTGCCTCA
CAGCATCGGTGACCTGATGTCACTGACGAGGCTTCATCTACAGGAGTGCA
GCGACCTGCAATATTTGCCAGACAGCATCGGCAACCTTAGTTCCCTGGCA
GCACTGACAAAGCTTGACGTGAGCAACTGCAGCGCAGTATCCTGCCTGCC
TGACACCATTGGCGCGCTGCAGGAGCTTACATGTCTGCAGGTCACATTAT
GTGACGAGCTTGAAGCCCTGCCAGACACCATATGCCGCCTTTCGTCGCTC
ACAAAGTTGGATGTCAGGGACTGTGAGGGGCTTGCGGCACTGCCGAACGA
TATTGGCAGTATGCAAGCGCTGACGTACCTTGACCTCAGAATGTGCTCGG
AGCTCATGATGCTGCCAGACAGCATTGGCGAGCTAGCAGCGCTCAGAGCG
CTGGTCCTGAGGGGCTGCACCGGGCTGTTCTGCCTGCCGGACGCGCTGTG
GCAGTTGATAAAGCTCACATCAATCAATGCACAGGGGTGTCAAGAGCGTC
TCAATCTGAGGGATTGCCACGGGCTATTTCACATGCCTCACAGCATTGGT
GACCTTGCCTCACTGACGCGGCTTCATCTACGTGAGTGCAGCGGCCTGCA
ACATTTGCCTGACAGCATTGGCAACCTTAGTTTGTTGACGGAGCTGAGCC
TTCTCCTGTGCGAGCAGATCTCTAGCCTGCCTGATACCATCGGCAACCTT
GTGTCGCTTGAAAAGTTTACGCTGGCCTTTTGCCCTGCGCTGACGAGCCT
GCCAAGGAGTATCGGCAGCCTGGCAGCACTGACAAAGCTTAATTTGTTAT
GCTGTGGTGCACTAGATTGCCTTTCAGACACCATTGGCGAGCTGCAGGCA
CTTACGTGCCTGGATGTTTTCTCATGTGCCGGGCTCGTAGCCCTGCCAGA
CACCCTTGGCAGCCTGTCGGTGCTCACGGAGATTGAACTTTCAGAGTGCA
CGGGGCTGACGGCGCTGCCGATCAGCATTGGCGATCTGCAGGTGCTCACG
CACCTCGATTTAAGTATGTGCCAGGCGCTGGCTGCACTTCCAGACAGCAT
AGGCAATCTGCAATCGCTCACACGGCTGAATCTCCAGGACTGCACTCGCT
TGCCGTGCCTGCCGGACTCGTTGTGGCAGTTGAAGCGGCTCACATCCATA
ACTGCAAAGGGGTGC

protein sequence of jgi.p|Trimin1|151688

>Trimin1|151688|gw1.3.426.1 ID=Trimin1|151688|gw1.3.426.1|Name=jgi.p|Trimin1|151688|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=405bp
LTELNLEECYGLVHLPHSIGDLMSLTRLHLQECSDLQYLPDSIGNLSSLA
ALTKLDVSNCSAVSCLPDTIGALQELTCLQVTLCDELEALPDTICRLSSL
TKLDVRDCEGLAALPNDIGSMQALTYLDLRMCSELMMLPDSIGELAALRA
LVLRGCTGLFCLPDALWQLIKLTSINAQGCQERLNLRDCHGLFHMPHSIG
DLASLTRLHLRECSGLQHLPDSIGNLSLLTELSLLLCEQISSLPDTIGNL
VSLEKFTLAFCPALTSLPRSIGSLAALTKLNLLCCGALDCLSDTIGELQA
LTCLDVFSCAGLVALPDTLGSLSVLTEIELSECTGLTALPISIGDLQVLT
HLDLSMCQALAALPDSIGNLQSLTRLNLQDCTRLPCLPDSLWQLKRLTSI
TAKGC

mRNA from alignment at Contig_3:1067964..1072931-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_381 ID=mRNA_381|Name=jgi.p|Trimin1|151688|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4968bp|location=Sequence derived from alignment at Contig_3:1067964..1072931- (Tribonema minus UTEX_B_3156 )
TTGACGGAGCTCAATCTGGAGGAATGCTACGGGCTAGTTCACCTGCCTCA
CAGCATCGGTGACCTGATGTCACTGACGAGGCTTCATCTACAGGAGTGCA
GCGACCTGCAATATTTGCCAGACAGCATCGGCAACCTTAGTTCGTTGACA
GAGCTGAGCCTTCTCCTGTGCGAGCCGGTCTCTAGCCTGCCTGCCACCAT
CGGCAACCTTGTGTTGCTTGAAAAGTTGACGCTGGCCTTTTGCCCTGCGC
TGGCAAGGTTGCCGGTTTGCCTCGTTGACCTGCCAGCTCTGACAGAGCTG
TTCATTGGGTCATGTGATGTCCTGACAGTTCTTCCTGGCTTCATAGGCCA
TCTAGCCCACTTGCGGTCGCTCGTTCTAGACTTCTTGCCGATCAAAACCC
TGCCAAGGAGCATCGGCAGCCTGGCAGCACTGACAAAGCTTGACGTGAGC
AACTGCAGCGCAGTATCCTGCCTGCCTGACACCATTGGCGCGCTGCAGGA
GCTTACATGTCTGCAGGTCACATTATGTGACGAGCTTGAAGCCCTGCCAG
ACACCATATGCCGCCTTTCGTCGCTCACAAAGTTGGATGTCAGGGACTGT
GAGGGGCTTGCGGCACTGCCGAACGATATTGGCAGTATGCAAGCGCTGAC
GTACCTTGACCTCAGAATGTGCTCGGAGCTCATGATGCTGCCAGACAGCA
TTGGCGAGCTAGCAGCGCTCAGAGCGCTGGTCCTGAGGGGCTGCACCGGG
CTGTTCTGCCTGCCGGACGCGCTGTGGCAGTTGATAAAGCTCACATCAAT
CAATGCACAGGGGTGTCAAGAGCGTGTTCAACAGAGTGCAGAGGCGCTAG
TGGGCAGGAACCTCGCACGTACTTGCGGCCGGTGATTGCTTGGAACATAC
ATACCTTTGCATTTCCTTACTTGCACAAAGGAGCGATGTGTCCTTTCCGT
CTTTTGTTTGCCCTTTTCATTTGCTTTCAACATGCACATCACAGTTGGCT
TTGCAGCGGAGCGCTCTGCCCCTTCTGCCTTGTGTATGCCCGCTTGAGAT
GCCCTTGACATGCGCAAATGTTGCAGTGCGCCACGCTTATATGCCTCTTT
TGTGCACATCACAACACTTTGCAGCACGTGCTCACACAGCAGCAGCCTAG
CTTCAACGCTTTTGCCACTTGTGCCCCACTTGCACTTAGTGCTGTGTATA
GACTGTTGTGCTTGTGCACTGTGCTCAGCGTGGCAGCATGCTATTACTGC
TCCATCCGTGAGTGCTGGTGGACAAAGCGAGTTGATGCTGCGAAGTTGCA
AGTGGTGCCGCGGCTTGTATTGGTGCAGTTTGCGCAGTGCTCAATCCTGT
GTCACACCCTGGCCTGTGGCGCCTTCTTGTAGGCACGTGCTAAATGACAA
TGCCACCATGTCTCAGCACGCGAGTTGTGACCCTGCGCACACTCCTCAAG
TTGGTCTTGACCATTCATGCATCAGCTGCCAGCAGAACTTGCCAAGAAGT
GGTACAGTACTTGAGCACGAACAGTCAGATAAGTACAATGATGTGGGGGG
AGAGTCTTGTAGCTTTGTTTGGTATCCCTGCTAGTATGTGGGGGACAGTC
GCTTGCGGGTGCTTTGTTGGGGGTGAGGTGGGGGGCGGGGTGTGGCGTGC
AAGCTTTGCATGCTACATCCAAGAGTGAGAACAAGGCGACACACCTACAA
CATGGCATTTCCACAGCCACAAGTGGAATATAATAAAAGTACAATGATGT
GAGCAAAATTATTCAAGCAGCAAGATCAGAGAGACGAGCAAGGTGGATGG
TACAAAGGGCAAGATGATCAAGGGCATTCCAGAGAGTCATGAGAAAAGTA
AGCGCATGTTTGACAAAGTGCAAAAACAAACTTCAACAACGAACTTCAGT
TGTTGAAGTTTTTGTCGCTCTGAAAAGCTTTAGAGAATTGTGAGAACGAG
TGCGGCGATGTATCCAGGCAAGCAAGCTGAAGCCGGGGCGACCTCAGGGA
TGCGCTGGTGGCCGGAGTCTTATTCAACCAGCGCTGGGGCGGCACCTCCT
CAGGAAGCTTCACTAAGCTCAAAGCGGCACAAGCCTCCGGAGCGTGAGGA
TGCCAGCTTGGACACGCTTACGCTCGCGCTGACGGTGGTGGCGCAGAACC
ACATGCTGCCTAAGGATGCCTGGAGTCTGTGCAAGCTCATGCACCTCAAG
GTGAAGCCATGTGCACGCATGATTTTCAAAGGGAGGTTTCCTGTGGCTAC
CGCTGCCCAGGCCTTCGTCAGCAAAACCGTCGTCCACATTGAGCTGCGCG
GATCGTTCGACGTGGATCCACTGCAGGCCTTGGCTCTGAGCCCTGCTGCA
ACTGCTAGCGGTGCCGCAGACGACTATGACGCTTTGTTCAGAGATGTCAC
GGTCATCACCCTGCGGCACCATGCAGGCGCGCTCACGCGCATCCCACACA
CGCTGCAGGCGCTGCGCATCGTCGAGTGCGATCTTGCTACAACAATTCCG
ATGCTGCGTGCGGTTGTCCACGCCACAGGCTTAGGCCCTCAAACAGACAG
ATGCGCTGGTACTAGTCAGGTCAGTATCTTTCGGGCGTTACACCAAGCGC
CTGCCAGGCTGCATTGCTGACCTGCCGGTGCTGACGGAGCTCAATCTGAG
GGATTGCCACGGGCTATTTCACATGCCTCACAGCATTGGTGACCTTGCCT
CACTGACGCGGCTTCATCTACGTGAGTGCAGCGGCCTGCAACATTTGCCT
GACAGCATTGGCAACCTTAGTTTGTTGACGGAGCTGAGCCTTCTCCTGTG
CGAGCAGATCTCTAGCCTGCCTGATACCATCGGCAACCTTGTGTCGCTTG
AAAAGTTTACGCTGGCCTTTTGCCCTGCGCTGACGAGGTTGCCGGTTTGC
CTCGTTGACCTGCCAGCTCTGACAGAGCTGTTCGTTGGGTCAAACGAAGG
TCACAACCTTTTGTAGCGTATACACAGAGCAACGGCCCTGGCTTGATGTG
TGGGGGCCTGGCAGCATGCTGTCACTGCATCTGTAAGTGCTGCTGGATAC
TGTGAGATGATGCGGAGCTGCACTTGATGCCTCAGCTTGTATTGGCTCTG
CAGTTTGTGCAATGCTTAGGTGTCAAGTGCTGGCCTGGACTTCAATTCAA
CTTCAATCCAATTTAATCACGAACTTCAACTGAAAGTTGAGTTGTGAGAA
AAAGATCTCCACAGGCTGCAGCGAAAATGGCTAGCATCGCCACTGGATCA
AAGGATCTGCGACGTCGAAAGGAGAAGGTTGTCGGAGAGATAGATGCGCT
GCTGACAAGTCTTGCCAGCAAACGCAAGGAGCTGCCCGCCCTGAACGCAG
CATTGGCGCAGACATGCCAGCAGCCACAGGGTATCGGGCTCGATCCCTCG
CAATCGTCGCAGCGATCACCGCGCTCAACACCGAACGCAGAGGAACCAGT
GGTGCATTCTTCGCTCGGCGGCGAAGCTGAGGCCGCGCAGGAAGGAGAGC
TTCACCTCGCTGGCGGTCGGAGGGTCACTCAGGATGGCGCTGGAGCAGCA
GCTCGTCAGGAGGCTTTACTGGTGCACAAGCGAATCAAGGCGGCAGAGCC
TGAGGATGTCAGCTATATCACCTTACACATGCTCACACGCATGCGCTCAC
GGTGATGGCGCATAATCACATGCTGCCCATGGACGGCTGGAGTCTGTGCA
AGCTCATGCACCAGAAGGTGAAGCCATTTGCACGCCTGACCTTCAGAGCG
CCGTGCACTCCTGCTGTGGCTGCCCAGGCCCTCGTCAGCAAAACTCTCTC
CCACCTCAGGCTGCGCGGCTCATTTGAGGTCGACCCGCTGCTCGCCATGT
CTCTGAGCGCTGCCGCGCCCGCCACTGGCGCTGCGGACGCGTTCGATGCC
TTGTTCGGAGACGTCAAGCTCATCACTTTACAGAAGTATGCAGGAGGGGA
GTTCACGCGCATTCCACGCACATTGCAGGCGCTGCATATTGTAGAGTGCA
GCCTGAAAGCCACGGTGCCCCTGCTGCGCGCGGCCCTTCGTGCCAGCGAC
TCCCGGACCGGCCCTCAGAGAGATGCGCTGGAGCTAGTGAAGTCTGTGTG
TCTTGGCCACGGCCAAGCGTGGCTGCCGGGTTGCATAGATGACCTGCCGG
CACTGACAGAGCTTGATTTGAGCAGTTGCAAGGAGCTAGAGTACTTGCCT
TACAATCTCGGTGACCTGGTTGCATTGACGAGGCTAAATTTAAGCGAATG
CAGCCAGCTGCGATGTTTGCCACACAGCATCGGCAATCTGCCCCTGTCGA
AGGATTTGTGCCTTATGCCCTGTAAGGAGCTCTCCAGCCTGCCTGCTTCC
ATAGGCAATCTGGCATCCTTGCAAAAGCTGGCATTGGGGTGGTGTGACGA
GCTCACAAGCTTGCCGGCATGCCTCGGTGATTTGACAGCTCTGACAGAGC
TGCGAATCGTATCGTGCACTGCTTTGGCAACTCTGCCTGATTCCATTGGC
AAGCTAGCTCACTTGTGATTCCTCAATCTGGACTACTTGCCGATCACAAG
CCTGCCAAGGAGTATCGGCAGCCTGGCAGCACTGACAAAGCTTAATTTGT
TATGCTGTGGTGCACTAGATTGCCTTTCAGACACCATTGGCGAGCTGCAG
GCACTTACGTGCCTGGATGTTTTCTCATGTGCCGGGCTCGTAGCCCTGCC
AGACACCCTTGGCAGCCTGTCGGTGCTCACGGAGATTGAACTTTCAGAGT
GCACGGGGCTGACGGCGCTGCCGATCAGCATTGGCGATCTGCAGGTGCTC
ACGCACCTCGATTTAAGTATGTGCCAGGCGCTGGCTGCACTTCCAGACAG
CATAGGCAATCTGCAATCGCTCACACGGCTGAATCTCCAGGACTGCACTC
GCTTGCCGTGCCTGCCGGACTCGTTGTGGCAGTTGAAGCGGCTCACATCC
ATAACTGCAAAGGGGTGC

Coding sequence (CDS) from alignment at Contig_3:1067964..1072931-

>mRNA_381 ID=mRNA_381|Name=jgi.p|Trimin1|151688|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1215bp|location=Sequence derived from alignment at Contig_3:1067964..1072931- (Tribonema minus UTEX_B_3156 )
TTGACGGAGCTCAATCTGGAGGAATGCTACGGGCTAGTTCACCTGCCTCA
CAGCATCGGTGACCTGATGTCACTGACGAGGCTTCATCTACAGGAGTGCA
GCGACCTGCAATATTTGCCAGACAGCATCGGCAACCTTAGTTCCCTGGCA
GCACTGACAAAGCTTGACGTGAGCAACTGCAGCGCAGTATCCTGCCTGCC
TGACACCATTGGCGCGCTGCAGGAGCTTACATGTCTGCAGGTCACATTAT
GTGACGAGCTTGAAGCCCTGCCAGACACCATATGCCGCCTTTCGTCGCTC
ACAAAGTTGGATGTCAGGGACTGTGAGGGGCTTGCGGCACTGCCGAACGA
TATTGGCAGTATGCAAGCGCTGACGTACCTTGACCTCAGAATGTGCTCGG
AGCTCATGATGCTGCCAGACAGCATTGGCGAGCTAGCAGCGCTCAGAGCG
CTGGTCCTGAGGGGCTGCACCGGGCTGTTCTGCCTGCCGGACGCGCTGTG
GCAGTTGATAAAGCTCACATCAATCAATGCACAGGGGTGTCAAGAGCGTC
TCAATCTGAGGGATTGCCACGGGCTATTTCACATGCCTCACAGCATTGGT
GACCTTGCCTCACTGACGCGGCTTCATCTACGTGAGTGCAGCGGCCTGCA
ACATTTGCCTGACAGCATTGGCAACCTTAGTTTGTTGACGGAGCTGAGCC
TTCTCCTGTGCGAGCAGATCTCTAGCCTGCCTGATACCATCGGCAACCTT
GTGTCGCTTGAAAAGTTTACGCTGGCCTTTTGCCCTGCGCTGACGAGCCT
GCCAAGGAGTATCGGCAGCCTGGCAGCACTGACAAAGCTTAATTTGTTAT
GCTGTGGTGCACTAGATTGCCTTTCAGACACCATTGGCGAGCTGCAGGCA
CTTACGTGCCTGGATGTTTTCTCATGTGCCGGGCTCGTAGCCCTGCCAGA
CACCCTTGGCAGCCTGTCGGTGCTCACGGAGATTGAACTTTCAGAGTGCA
CGGGGCTGACGGCGCTGCCGATCAGCATTGGCGATCTGCAGGTGCTCACG
CACCTCGATTTAAGTATGTGCCAGGCGCTGGCTGCACTTCCAGACAGCAT
AGGCAATCTGCAATCGCTCACACGGCTGAATCTCCAGGACTGCACTCGCT
TGCCGTGCCTGCCGGACTCGTTGTGGCAGTTGAAGCGGCTCACATCCATA
ACTGCAAAGGGGTGC