Homology
BLAST of jgi.p|Trimin1|12018 vs. uniprot
Match:
A0A836CMT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT3_9STRA)
HSP 1 Score: 570 bits (1468), Expect = 1.920e-204
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 1
Query: 37 MMRAPSLLPMICMAVVVCHCQGFMSARPGFAAGVKAHSALRMAADVHGVVDAAFKKIEADQALRPSDHAEAMELDAFTVGDVSGTIEGYLGTKVDWCSKVSTKGPGGDASYALSCWTFPMYDVPHLTVALSKSGDTLTLKADLIAKDDTMYSQDYLESYYGGETLAWYESIVGNAHTTSLPVPATLRGRALASPGLVHVSGPESEVAELFAASVDKITDMWLAWLADAAEIARVRRGTMLSRDNILRRMSWAVTCKDPMFGDQSQQIATAIAGPGDMAYVGQYS 888
MMRAPSLLPMICMAVVVCHCQGFMSARPGFAAGVKAHSALRMAADVHGVVDAAFKKIEADQALRPSDHAEAMELDAFTVGDVSGTIEGYLGTKVDWCSKVSTKGPGGDASYALSCWTFPMYDVPHLTVALSKSGDTLTLKADLIAKDDTMYSQDYLESYYGGETLAWYESIVGNAHTTSLPVPATLRGRALASPGLVHVSGPESEVAELFAASVDKITDMWLAWLADAAEIARVRRGTMLSRDNILRRMSWAVTCKDPMFGDQSQQIATAIAGPGDMAYVGQYS
Sbjct: 1 MMRAPSLLPMICMAVVVCHCQGFMSARPGFAAGVKAHSALRMAADVHGVVDAAFKKIEADQALRPSDHAEAMELDAFTVGDVSGTIEGYLGTKVDWCSKVSTKGPGGDASYALSCWTFPMYDVPHLTVALSKSGDTLTLKADLIAKDDTMYSQDYLESYYGGETLAWYESIVGNAHTTSLPVPATLRGRALASPGLVHVSGPESEVAELFAASVDKITDMWLAWLADAAEIARVRRGTMLSRDNILRRMSWAVTCKDPMFGDQSQQIATAIAGPGDMAYVGQYS 284
BLAST of jgi.p|Trimin1|12018 vs. uniprot
Match:
A0A6H5JAD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD8_9PHAE)
HSP 1 Score: 210 bits (535), Expect = 2.700e-63
Identity = 110/234 (47.01%), Postives = 143/234 (61.11%), Query Frame = 1
Query: 190 AAFKKIEADQALRPSDHAEAMELDAFTVGDVSGTIEGYLGTKVDWCSKVSTKGPGGDASYALSCWTFPMYDVPHLTVALSKSGDTLTLKADLIAKDDTMYSQDYLESYYGGETLAWYESIVGNAHTTSLPVPATLRGRALASPGLVHVSGPES-EVAELFAASVDKITDMWLAWLADAAEIARVRRGTMLSRDNILRRMSWAVTCKDPMFGDQSQQIATAIAGPGDMAYVGQYS 888
AAF +E L P DHAEAM L+ + SGTI G+ G KVDW S+ + G L W PM+DVPHL++ L + LT + DL+AKDD MY++ Y E YYGG T AW+E+I+ N + V L+ R+LASP V+ P++ E A + + +I +WL +L DA EIARVRRGTMLSRD+ +RR WAVT D GD+ Q+IA +AGPGDM Y GQ S
Sbjct: 18 AAFSMVEQALELSPLDHAEAMGLETWEAAGSSGTIAGFKGKKVDWVSRCTINEADGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWEAIMQNPNVVPAKVSMDLKERSLASPVHFSVTMPDTAENAAVLGNAAQEIAAIWLGFLDDATEIARVRRGTMLSRDSEVRRTWWAVTGNDKALGDRGQEIAAGMAGPGDMGYTGQAS 251
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|12018 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.92e-204 / Id = 100.00 Expect = 2.70e-63 / Id = 47.01 Sequence A0A836CMT3_9STRA A0A6H5JAD8_9PHAE
Match Name E-value Identity Description
A0A836CMT3_9STRA 1.920e-204 100.00 Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more] A0A6H5JAD8_9PHAE 2.700e-63 47.01 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
ProteomeId Trimin1|12018|CE12017_117 Max annot lvl 2759|Eukaryota EggNOG OGs 2CHM3@1|root,2T2RF@2759|Eukaryota Evalue 1.4e-32 Seed ortholog 2880.D8LIG6 Hectar predicted targeting category signal peptide Ec32 ortholog description Red chlorophyll catabolite reductase Ec32 ortholog Ec-18_003740.1 TranscriptId 12340 Track FilteredModels1 ProteinId 12018
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA
>mRNA_3772 ID=mRNA_3772|Name=jgi.p|Trimin1|12018|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1011bp|location=Sequence derived from alignment at Contig_12:749883..760230- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
AAACAGCGAGCCCATTAGAAGCTGCAGCAGGCGCACATGATGAGAGCGCC back to top protein sequence of jgi.p|Trimin1|12018
>Trimin1|12018|CE12017_117 ID=Trimin1|12018|CE12017_117|Name=jgi.p|Trimin1|12018|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=285bp
MMRAPSLLPMICMAVVVCHCQGFMSARPGFAAGVKAHSALRMAADVHGVV back to top mRNA from alignment at Contig_12:749883..760230-
Legend: exon five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3772 ID=mRNA_3772|Name=jgi.p|Trimin1|12018|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=10348bp|location=Sequence derived from alignment at Contig_12:749883..760230- (Tribonema minus UTEX_B_3156 )AAACAGCGAGCCCATTAGAAGCTGCAGCAGGCGCAC ATGATGAGAGCGCC
ATCCCTTTTGCCGATGATCTGCATGGCTGTGGTCGTGTGCCATTGCCAGG
GCTTCATGAGCGCGAGGCCCGGCTTTGCAGCTGGGGTTAAGGCGCACAGC
GCGCTGCGGATGGCGGCAGACG TGCACGGGGTGGTGGACGCAG
CGTTCAAGAAGATAGAGGCGGACCAGGCGCTGCGACCGAGCGATCACGCG
GAGGCGATGGAGCTG GA
CGCCTTCACGGTGGGCGACGTGTCCGGCACCATCGAGGGCTACCTGGGCA
CAAAG GTGGACTG
GTGCAGCAAGGTCAGCACCAAGGGGCCCGGCGGGGACGCGTCGTACGCGC
TCAG CTGCTGGACAT
TCCCCAT GTACGACGTGCCCCACCTGACGGTGGCGCTCAGCAAGAGTGGCGACA
CGTTGACGCTCAAGGCGGACCTCATCGCGAAGGACGACACCATGTACTCG
CAG GACTACCT
AGAGAGCTACTACGGCGGGGAGACACTGGCGTGGTACGAGTCCATCGTCG
GCAACGCACACACCACCTCGCTGCCG GTGCCGGCGACG
CTGCGCGGCCGCGCGCTCGCGTCGCCGGGCCTGGTCCACGTTTCGGGCCC
GGAGAGCGAGGTCGCGGAGCTGTTCGCGGCGAGTGTCGATAAAATCACCG
ACATGTG GCT
GGCGTGGCTCGCGGACGCAGCCGAGATTGCGCGCGTGCGCCGCGGCACCA
TGCTCTCCCGGGACAACATCCTGCGCCGCATGAG CTGGGCGGTTACCTGCAAGGACCCCATGTTCGGGGACCAGAGCCAA
CAG ATCGCCACTGCCATCGCGGGGCCTGGCGA
CATGGCGTACGTTGGCCAGTACAGCTGA GCTGTACAGTACAGGGGTGTAC
CCTTGTGTACTCACATGACGTGACCAAGATTCGTACCTGAAGTGCTTTAT
CAAGAGCTTACAAGTGTTATGAAGAATACATGAGGTGTCACATTTGCC back to top Coding sequence (CDS) from alignment at Contig_12:749883..760230-
>mRNA_3772 ID=mRNA_3772|Name=jgi.p|Trimin1|12018|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=855bp|location=Sequence derived from alignment at Contig_12:749883..760230- (Tribonema minus UTEX_B_3156 ) back to top