mRNA_3717 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|11657
Unique NamemRNA_3717
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Match: A0A835ZC50_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC50_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.190e-15
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3
Query:   33 MINPAEGAALNGHVSVLKWLKARGLFRNELVLESAA 140
            MINPAEGAALNGHVSVLKWLKARGLFRNELVLESAA
Sbjct:    1 MINPAEGAALNGHVSVLKWLKARGLFRNELVLESAA 36          
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Match: A0A835ZLA1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLA1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.460e-7
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 3
Query:   15 ASPF---GSMINPAEGAALNGHVSVLKWLKARGLFRNELVLESAA 140
            ASP+   G   NPA GAA  GH+SVLKWLKA GLFR + VLESAA
Sbjct:  619 ASPYNYVGMYDNPAAGAARRGHMSVLKWLKAHGLFRKKQVLESAA 663          
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Match: A0A836CLV1_9STRA (NADH(P)-binding-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV1_9STRA)

HSP 1 Score: 563 bits (1450), Expect = 3.330e-200
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 1
Query:   58 MTASSGSASRREALDSTAAAACAAVLSFLSPGTVFAAAGGAVTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPDHAL 960
            MTASSGSASRREALDSTAAAACAAVLSFLSPGTVFAAAGGAVTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPDHAL
Sbjct:    1 MTASSGSASRREALDSTAAAACAAVLSFLSPGTVFAAAGGAVTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPDHAL 301          
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Match: D8LDG8_ECTSI (NAD(P)-bd_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG8_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 1.250e-82
Identity = 151/262 (57.63%), Postives = 182/262 (69.47%), Query Frame = 1
Query:  181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAV-----DVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951
            VTVLGA GKTG ECV+ L +KG    A +RS  L ++  +P A  T   +     DVT  SS+   +KGA  VIFA+SASK GG+A+AVDY+GVVN AKACLE  VPRLV+VSSGGV+ P S +YKFLNLFGEIM +K  GE+++R++YA  D  C+YTIVRPGGLTL PP GV  +E+NQGD  SGRIARADVA +CVE+IYS    D T ECY  DT KPL +VGVSNILKQ       +  +   G TW  LF GL+ D
Sbjct:  112 VTVLGAGGKTGRECVEYLASKGTGVRAVARS--LTNKEGEPLAFTTTKGITMETADVTVPSSLPGVIKGASAVIFASSASKQGGSAKAVDYEGVVNVAKACLEAKVPRLVVVSSGGVATPESSIYKFLNLFGEIMSWKIQGEDQLRSMYAAQDV-CHYTIVRPGGLTLDPPRGVGAIELNQGDTKSGRIARADVARVCVESIYSRNAEDCTLECYYKDTAKPLAAVGVSNILKQKTDDTAKSFGTESTGDTWDALFSGLKHD 370          
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Match: A0A7S3UTL3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTL3_HETAK)

HSP 1 Score: 262 bits (669), Expect = 6.390e-81
Identity = 163/315 (51.75%), Postives = 203/315 (64.44%), Query Frame = 1
Query:   55 YMTASSGSASRREALDSTAAA-ACAAVLSFLSPGTVFAAAGGAVTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSE----------FEDPSALLTAAAVDVTNLSSVSAAVK-GAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCY-YTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSA---HRGSTWAQLFQGLEPD 951
            Y  A+ G   RREAL    +  A   +LS LSP + FA+ G  V VLGA GKTG ECV  LL  G+ C ATSRSG+ + +                 L+ AA +V   ++++  +  G  GVIFAASASK GG A+ VDY+G+V  AKAC+   VPRLV+VSSGGVSKP+S VYKFLNLFGEIMK+K +GE+EV+ALYA +  P   YT+VRPGGLT  P  GV  LE+NQGD  SGRIARADVA I V A+   A ++T FECY ADT KPL++VG SNI+K+       A +S     R  +W  LF+GL+PD
Sbjct:   49 YQMAADGPMDRREALRRVGSTGASLGLLSILSPQSAFASPG-PVVVLGAGGKTGKECVYSLLRNGVPCIATSRSGAPQLDAAAXXXXXXXXXXXXXXLSFAAANVVQETTLTEVITPGIAGVIFAASASKKGGTAKEVDYEGLVKVAKACIAAEVPRLVVVSSGGVSKPDSAVYKFLNLFGEIMKYKVMGEDEVKALYAAAGNPALGYTVVRPGGLTEEPAKGVAALELNQGDTKSGRIARADVAEIAVRALLDPAAKNTVFECYDADTSKPLNAVGASNIMKKKTSTEEAAATSTGLERRADSWGGLFKGLKPD 362          
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Match: A0A7S2HEC2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HEC2_9STRA)

HSP 1 Score: 261 bits (668), Expect = 2.080e-80
Identity = 150/266 (56.39%), Postives = 180/266 (67.67%), Query Frame = 1
Query:  181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGS------LKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAP---CYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951
            V ++GANG+TGTECVK L + G+   ATSRSG+      + S     S LL  AA DVT   ++++ ++G+K VIFAASASK GG A AVD  G+VN AKAC+E NVPRLVIVSSGGVSKP+SPVY FLN+FG IM+ K  GE+ VR +Y    +      YT+VRPGGLT  PP GV  +E+NQGD  SGRI+RADVAAICVE + SDA   TTFECY ADT  PL SVG+SNI+K        +     RG TW  LF GLE D
Sbjct:  127 VIIIGANGRTGTECVKYLASSGMPVVATSRSGTYNALEEVSSTLPPSSTLLREAACDVTKPETLTSTIQGSKAVIFAASASKAGGTAAAVDNTGLVNVAKACIECNVPRLVIVSSGGVSKPDSPVYLFLNIFGNIMEEKIRGEDAVREMYKSLPSGKNGLSYTVVRPGGLTTDPPRGVAAVELNQGDTKSGRISRADVAAICVECLSSDAAAGTTFECYDADTAAPLASVGMSNIMKAKTREAFVS-GKERRGETWGALFSGLEKD 391          
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Match: A0A7S3Q5A4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5A4_9STRA)

HSP 1 Score: 251 bits (641), Expect = 5.640e-77
Identity = 142/260 (54.62%), Postives = 175/260 (67.31%), Query Frame = 1
Query:  181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEA-IYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSA--HRGSTWAQLFQGLEPD 951
            + V+GANGKTG+ECV   +++GI   ATSR G    E+     L TA   DVT  S+V AA+KG++ VIFAASASK GG A AVD  G+ N A +C+   +P LVIVSSG V+KP+SPVYKFLNLFG IM  K  GE+ VR LY  + +PC YT++RPGGLT     GV  LE+NQGD  SGRI+RADVAA+C+EA ++S  +  TTFECY ADT KPL +VGVSNI+K      +    S    RG TW  +F GLE D
Sbjct:   86 ICVIGANGKTGSECVDACISRGINVRATSRGGVYTGEYSSEQFLSTAPC-DVTISSTVDAAIKGSQAVIFAASASKAGGTAAAVDNIGLTNVASSCIRQGIPHLVIVSSGAVTKPSSPVYKFLNLFGNIMAEKIKGEDTVRELYKDASSPCTYTVIRPGGLTQELARGVSALELNQGDTKSGRISRADVAALCIEATLHSKDSGSTTFECYDADTSKPLGTVGVSNIVKAKNKSDSEVFMSGKERRGETWGDIFVGLEND 344          
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Match: A0A7S1CTA4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CTA4_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.600e-74
Identity = 141/266 (53.01%), Postives = 176/266 (66.17%), Query Frame = 1
Query:  181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPS-ALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDA-------PCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAI-YSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951
            + V+G NG+TGTE VK L++K     ATSR+G        P+ A+L     DVTN  SV  A  G   VIFAASASK GG   AVD  G+VN AKAC++ NVP LV+VSSG V+KP+SPVY+FLNLFG+IM+ K  GE+ VR LYA+ +A          YTI+RPGGLTL PP GV  +E+NQGD  SGR+ARADVA +CVE++ Y   T +TTFECY ADTG PL +VG+SNI K+             RG+T+ +LF GL+ D
Sbjct:   95 ICVIGCNGRTGTEVVKYLISKNEPIKATSRTGEYNDAASVPAGAMLEQLVCDVTNPKSVQLACAGTSAVIFAASASKSGGTPSAVDNAGLVNVAKACMDANVPHLVVVSSGAVTKPSSPVYQFLNLFGKIMEEKVKGEDAVRKLYAEHNANLREGGQKLTYTIIRPGGLTLDPPRGVAAIELNQGDTKSGRLARADVAQLCVESLNYPQLTGETTFECYDADTGAPLATVGLSNIAKKKTDGEVFVSGFERRGNTYEELFTGLQKD 360          
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Match: B7G342_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G342_PHATC)

HSP 1 Score: 244 bits (624), Expect = 3.690e-74
Identity = 136/260 (52.31%), Postives = 176/260 (67.69%), Query Frame = 1
Query:  181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQS--DAPCYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAI-YSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951
            + V+GANG+TG++CV+  + +GI   ATSRSG+   +    S L+     DVT  +++S A++  + VIF ASASK GG    VD  G+VN A+ACL   +P LV+VSSG V+KPNSPV++FLNLFG+IM+ K  GE+EVR LY+ S       YT++RPGGLT   P GV  LE+NQGD  SGRIARADVAA+C+EA  Y   T   TFECY +DTGKPL +VG+SNILKQ A P      + H G T+ +LF GL+ D
Sbjct:  109 ICVIGANGRTGSQCVQACVERGIPVRATSRSGTYNGD--SSSKLVALLPCDVTKPATISRAIERCQAVIFCASASKNGGTPSQVDNDGLVNVARACLAQKIPHLVVVSSGAVTKPNSPVFQFLNLFGKIMEEKIKGEDEVRRLYSMSGNQPSLVYTVIRPGGLTEDAPRGVTALELNQGDTKSGRIARADVAALCIEATRYPGLTGFATFECYDSDTGKPLSTVGISNILKQKAAPADFTSGTEHVGETFEKLFTGLQRD 366          
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Match: A0A7S0HMC0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HMC0_9CRYP)

HSP 1 Score: 233 bits (594), Expect = 1.360e-69
Identity = 137/273 (50.18%), Postives = 183/273 (67.03%), Query Frame = 1
Query:  172 GGAVTVLGANGKTGTECVKQLLAKGIACTATSRS--GSLKSEF--EDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALY--AQSDAPCY---YTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSA----HRGSTWAQLFQGLEPD 951
            GG+V V+GA G TG ECV  L+ +GI   A  R+   S   +F  E  S+L++    D+T   ++   +KG K +IFAASASK GG+ + VDY+G++N A+ C++ N+ RLV+VSSG VS+P+S VYKFLNLFG IM +K  GE E++++Y  A++  P +   YTIVRPGGLT  P LGV  +E+NQGD  SGRIARADVA ICVE+I+S    DTTFECY  DT KPL+ VG+SN+ K+     T A S+      +G +W +LF GLE D
Sbjct:  101 GGSVAVVGAGGGTGKECVDALIRRGIPVRAIIRAKTNSKGKDFVLEGDSSLVSEIVGDITAPDTLRDPLKGCKALIFAASASKKGGDPQKVDYQGLLNCAQLCIDQNIERLVVVSSGAVSRPDSAVYKFLNLFGSIMYWKIQGENEMKSMYKAAKAKNPSFSGSYTIVRPGGLTEGPSLGVSSIELNQGDTKSGRIARADVAEICVESIFSKDAADTTFECYYKDTAKPLEGVGLSNLFKKKTSD-TEAQSNLTGKERQGDSWPKLFSGLEKD 372          
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Match: L1IPP0_GUITC (NAD(P)-bd_dom domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IPP0_GUITC)

HSP 1 Score: 228 bits (581), Expect = 1.460e-68
Identity = 134/273 (49.08%), Postives = 181/273 (66.30%), Query Frame = 1
Query:  172 GGAVTVLGANGKTGTECVKQLLAKGIACTATSRS--GSLKSEF--EDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALY--AQSDAP---CYYTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPS----SAHRGSTWAQLFQGLEPD 951
            GG++ V+GA+G TG ECV  L+ +GI   A  R+   S   +F  E  S+L++    D+T+  ++  ++KG K +IFAASASK GG+ + VDY+G++N A+ C++ N+ RLV+VSSG VS+P+S VYKFLNLFG IM +K  GE E++ +Y  A+   P   C YTIVRPGGLT    LGV  +E+NQGD  SGRIARADVA ICVE+I+S    DTTFECY  DT KPL+ VG+SN+ K+     T A S       +  +W +LF GL+ D
Sbjct:   30 GGSIAVVGASGGTGKECVNALVRRGIPVRAIIRAKTNSKGKDFVLEGDSSLVSEVIGDITSPDTLRDSLKGCKALIFAASASKKGGDPKQVDYQGLLNCAQLCIDQNIERLVVVSSGAVSRPDSAVYKFLNLFGSIMYWKIQGENEMKGMYKSAREKNPSFACSYTIVRPGGLTEGAALGVSSVELNQGDTKSGRIARADVAEICVESIFSKDAADTTFECYYKDTAKPLEGVGLSNLFKKKTSD-TEAQSIMTGKERQADSWPKLFAGLDKD 301          
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Match: A0A7S2PD41_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PD41_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.090e-67
Identity = 140/271 (51.66%), Postives = 173/271 (63.84%), Query Frame = 1
Query:  181 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLKSEF---EDPSALLTAAAVDVTNLSSV-------SAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGE-IMKFKALGEEEVRALYAQSDAPCY---YTIVRPGGLTLAPPLGVEQLEINQGDAISGRIARADVAAICVEAIYSDATRDTTFECYGADTGKPLDSVGVSNILKQTAGPGTPAPSSAHRGSTWAQLFQGLEPD 951
            V VLGANG TG ECV  LL KG +C ATSRSG LK +    E+     +A AVDVT++ S+       +        VIFAASAS  GG+A+AVD +GV+NAA+ C+ NN+PRLVIVSSG V++P+S VYK LN  G+ IM+ K  GE+ VR +YA  +       YTIVRPGGLT    LG   LE+NQGD  SGR++RADVA ICV  + S  T D TFECY A+T KP++SVG+SNI+K T    T        G TW +LF GL  D
Sbjct:   31 VLVLGANGGTGNECVAALLKKGRSCIATSRSGELKYQDMYRENELFSSSANAVDVTSIESLEDVLLEKATPTNNIGAVIFAASASTKGGDADAVDRQGVINAAQCCIANNIPRLVIVSSGTVTRPDSAVYKLLNFVGKGIMEAKISGEDAVRDMYANPEIKAKGLGYTIVRPGGLTTGTSLGASALELNQGDNKSGRLSRADVAEICVNCLDSPYTFDVTFECYEANTAKPVESVGISNIMKSTDAT-TFVSGREQLGETWEELFNGLSCD 300          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|11657 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZC50_9STRA4.190e-15100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZLA1_9STRA7.460e-766.67Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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BLAST of jgi.p|Trimin1|11657 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLV1_9STRA3.330e-200100.00NADH(P)-binding-domain-containing protein n=2 Tax=... [more]
D8LDG8_ECTSI1.250e-8257.63NAD(P)-bd_dom domain-containing protein n=1 Tax=Ec... [more]
A0A7S3UTL3_HETAK6.390e-8151.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2HEC2_9STRA2.080e-8056.39Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3Q5A4_9STRA5.640e-7754.62Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1CTA4_9STRA1.600e-7453.01Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B7G342_PHATC3.690e-7452.31Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S0HMC0_9CRYP1.360e-6950.18Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1IPP0_GUITC1.460e-6849.08NAD(P)-bd_dom domain-containing protein n=2 Tax=Gu... [more]
A0A7S2PD41_9STRA1.090e-6751.66Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_12contigContig_12:318496..318857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|11657|CE11656_12
Hectar predicted targeting categoryother localisation
TranscriptId11979
TrackFilteredModels1
ProteinId11657
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|11657gene_3717Tribonema minus UTEX_B_3156 geneContig_12 318496..318857 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3717_1exon_3717_1Tribonema minus UTEX_B_3156 exonContig_12 318496..318857 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3717UTR5_3717Tribonema minus UTEX_B_3156 five_prime_UTRContig_12 318496..318527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3717CDS_3717Tribonema minus UTEX_B_3156 CDSContig_12 318528..318791 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3717UTR3_3717Tribonema minus UTEX_B_3156 three_prime_UTRContig_12 318792..318857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|11657Trimin1|11657|CE11656_12Tribonema minus UTEX_B_3156 polypeptideContig_12 318528..318791 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3717 ID=mRNA_3717|Name=jgi.p|Trimin1|11657|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=362bp|location=Sequence derived from alignment at Contig_12:318496..318857+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATTTTCGCCCTTTGCGTCACCCTTTGGGTCCATGATCAACCCTGCTGAA
GGCGCAGCGTTAAACGGTCATGTTAGCGTATTGAAGTGGCTCAAGGCCCG
TGGCCTCTTCAGGAACGAGCTTGTACTTGAGAGTGCAGCCAGCGAGAGTC
GTTTTAAGGTGCTCAAGTGGGCACTCTCAATCGGGTGTGTGTGGAACGAG
TCCATATGCCAAACAGCGGCAGAGGGGGGGGACAAAGCCGTTGTAGACTG
GGCGGCAGCACGGGGGTGCACGTGCGCCGCTCACAGCAGCGCTTGATGCA
TGATGCATGGCCTGCCACGATTATCTTTCAGTTGCTTCTTCAAATACACA
CAGAGTATCAAG
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protein sequence of jgi.p|Trimin1|11657

>Trimin1|11657|CE11656_12 ID=Trimin1|11657|CE11656_12|Name=jgi.p|Trimin1|11657|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=88bp
MINPAEGAALNGHVSVLKWLKARGLFRNELVLESAASESRFKVLKWALSI
GCVWNESICQTAAEGGDKAVVDWAAARGCTCAAHSSA*
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mRNA from alignment at Contig_12:318496..318857+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3717 ID=mRNA_3717|Name=jgi.p|Trimin1|11657|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=362bp|location=Sequence derived from alignment at Contig_12:318496..318857+ (Tribonema minus UTEX_B_3156 )
GATTTTCGCCCTTTGCGTCACCCTTTGGGTCCATGATCAACCCTGCTGAA GGCGCAGCGTTAAACGGTCATGTTAGCGTATTGAAGTGGCTCAAGGCCCG TGGCCTCTTCAGGAACGAGCTTGTACTTGAGAGTGCAGCCAGCGAGAGTC GTTTTAAGGTGCTCAAGTGGGCACTCTCAATCGGGTGTGTGTGGAACGAG TCCATATGCCAAACAGCGGCAGAGGGGGGGGACAAAGCCGTTGTAGACTG GGCGGCAGCACGGGGGTGCACGTGCGCCGCTCACAGCAGCGCTTGATGCA TGATGCATGGCCTGCCACGATTATCTTTCAGTTGCTTCTTCAAATACACA CAGAGTATCAAG
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Coding sequence (CDS) from alignment at Contig_12:318496..318857+

>mRNA_3717 ID=mRNA_3717|Name=jgi.p|Trimin1|11657|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=264bp|location=Sequence derived from alignment at Contig_12:318496..318857+ (Tribonema minus UTEX_B_3156 )
ATGATCAACCCTGCTGAAGGCGCAGCGTTAAACGGTCATGTTAGCGTATT
GAAGTGGCTCAAGGCCCGTGGCCTCTTCAGGAACGAGCTTGTACTTGAGA
GTGCAGCCAGCGAGAGTCGTTTTAAGGTGCTCAAGTGGGCACTCTCAATC
GGGTGTGTGTGGAACGAGTCCATATGCCAAACAGCGGCAGAGGGGGGGGA
CAAAGCCGTTGTAGACTGGGCGGCAGCACGGGGGTGCACGTGCGCCGCTC
ACAGCAGCGCTTGA
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