mRNA_368 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|128935
Unique NamemRNA_368
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|128935 vs. uniprot
Match: A0A835Z6I9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6I9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 3.350e-7
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 1 
Query:    1 CHHGRERKRCVDCGGYQVC 57
            CHHGRERKRCVDCGGYQVC
Sbjct:    1 CHHGRERKRCVDCGGYQVC 19
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128935 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z6I9_9STRA3.350e-7100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1013952..1014101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|128935|gw1.3.10.1
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId129257
TrackFilteredModels1
ProteinId128935
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128935gene_368Tribonema minus UTEX_B_3156 geneContig_3 1013952..1014101 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_368_1exon_368_1Tribonema minus UTEX_B_3156 exonContig_3 1013952..1014101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_368CDS_368Tribonema minus UTEX_B_3156 CDSContig_3 1013952..1014101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|128935Trimin1|128935|gw1.3.10.1Tribonema minus UTEX_B_3156 polypeptideContig_3 1013952..1014101 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_368 ID=mRNA_368|Name=jgi.p|Trimin1|128935|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_3:1013952..1014101+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGTCATCACGGCCGTGAGCGGAAACGATGCGTCGATTGCGGCGGTTACCA
AGTGTGCCAGCATGGACGACGAAAGCATCGATGTCGAGACTGCGGGGGTA
AGAGCTTCTGCGCTCACGGGCGTCTGAGAGAAAGCTGCCGCTCTTGTCGC
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protein sequence of jgi.p|Trimin1|128935

>Trimin1|128935|gw1.3.10.1 ID=Trimin1|128935|gw1.3.10.1|Name=jgi.p|Trimin1|128935|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=50bp
CHHGRERKRCVDCGGYQVCQHGRRKHRCRDCGGKSFCAHGRLRESCRSCR
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mRNA from alignment at Contig_3:1013952..1014101+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_368 ID=mRNA_368|Name=jgi.p|Trimin1|128935|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_3:1013952..1014101+ (Tribonema minus UTEX_B_3156 )
TGTCATCACGGCCGTGAGCGGAAACGATGCGTCGATTGCGGCGGTTACCA
AGTGTGCCAGCATGGACGACGAAAGCATCGATGTCGAGACTGCGGGGGTA
AGAGCTTCTGCGCTCACGGGCGTCTGAGAGAAAGCTGCCGCTCTTGTCGC
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Coding sequence (CDS) from alignment at Contig_3:1013952..1014101+

>mRNA_368 ID=mRNA_368|Name=jgi.p|Trimin1|128935|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=150bp|location=Sequence derived from alignment at Contig_3:1013952..1014101+ (Tribonema minus UTEX_B_3156 )
TGTCATCACGGCCGTGAGCGGAAACGATGCGTCGATTGCGGCGGTTACCA
AGTGTGCCAGCATGGACGACGAAAGCATCGATGTCGAGACTGCGGGGGTA
AGAGCTTCTGCGCTCACGGGCGTCTGAGAGAAAGCTGCCGCTCTTGTCGC
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