mRNA_3671 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347266
Unique NamemRNA_3671
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347266 vs. uniprot
Match: A0A836C7B4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7B4_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.730e-57
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 3 
Query:   96 MSCRSWRRVCSLVAWLIRAHLCGREESSGGGDTGRAALSRAACGGLNQMSSLRRGSHSCLGGSRWGCTSRRRWSSGAGGGRSXXXXXXXXXXTSQRCCSGAG 401
            MSCRSWRRVCSLVAWLIRAHLCGREESSGGGDTGRAALSRAACGGLNQMSSLRRGSHSCLGGSRWGCTSRRRWSSGAGGGRSXXXXXXXXXXTSQRCCSGAG
Sbjct:    1 MSCRSWRRVCSLVAWLIRAHLCGREESSGGGDTGRAALSRAACGGLNQMSSLRRGSHSCLGGSRWGCTSRRRWSSGAGGGRSXXXXXXXXXXTSQRCCSGAG 102
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347266 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C7B4_9STRA5.730e-57100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:1803915..1807056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347266|estExt_Genemark1.C_Ctg_90185
Hectar predicted targeting categorysignal peptide
TranscriptId347588
TrackFilteredModels1
ProteinId347266
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347266gene_3671Tribonema minus UTEX_B_3156 geneContig_9 1803915..1807056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347266Trimin1|347266|estExt_Genemark1.C_Ctg_90185Tribonema minus UTEX_B_3156 polypeptideContig_9 1803917..1805340 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3671_5exon_3671_5Tribonema minus UTEX_B_3156 exonContig_9 1803915..1803990 -
exon_3671_4exon_3671_4Tribonema minus UTEX_B_3156 exonContig_9 1804097..1804245 -
exon_3671_3exon_3671_3Tribonema minus UTEX_B_3156 exonContig_9 1805258..1805359 -
exon_3671_2exon_3671_2Tribonema minus UTEX_B_3156 exonContig_9 1806539..1806549 -
exon_3671_1exon_3671_1Tribonema minus UTEX_B_3156 exonContig_9 1806992..1807056 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3671UTR3_3671Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 1803915..1803916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3671CDS_3671Tribonema minus UTEX_B_3156 CDSContig_9 1805258..1805340 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3671UTR5_3671Tribonema minus UTEX_B_3156 five_prime_UTRContig_9 1806992..1807056 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3671 ID=mRNA_3671|Name=jgi.p|Trimin1|347266|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=403bp|location=Sequence derived from alignment at Contig_9:1803915..1807056- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCAGCGTATTGGGCTGATCATGGGCCTGGGGCCGGAAGTGAAATCGCT
TTTGGGAGGTGCAGGTGCCATTCAACAGCACGGAGGCAACTGCTGATGAG
CTGCAGGAGCTGGCGGAGGGTCTGCAGCCTAGTGGCGTGGTTGATTAGGG
CGCACCTCTGCGGCAGAGAGGAATCAAGCGGAGGCGGCGATACGGGGCGC
GCCGCGCTGAGCCGTGCTGCTTGCGGGGGACTGAATCAGATGTCATCGCT
CAGGAGGGGGTCGCACAGCTGCTTGGGGGGCAGCCGCTGGGGGTGCACGT
CGCGAAGGCGCTGGAGCAGCGGAGCAGGAGGGGGTCGCTCAAGCTGCTCG
GCGGACAACCGCTGGGATTGCACGTCGCAAAGGTGCTGCAGCGGAGCAGG
TAA
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protein sequence of jgi.p|Trimin1|347266

>Trimin1|347266|estExt_Genemark1.C_Ctg_90185 ID=Trimin1|347266|estExt_Genemark1.C_Ctg_90185|Name=jgi.p|Trimin1|347266|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=102bp
MSCRSWRRVCSLVAWLIRAHLCGREESSGGGDTGRAALSRAACGGLNQMS
SLRRGSHSCLGGSRWGCTSRRRWSSGAGGGRSSCSADNRWDCTSQRCCSG
AG
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mRNA from alignment at Contig_9:1803915..1807056-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3671 ID=mRNA_3671|Name=jgi.p|Trimin1|347266|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3142bp|location=Sequence derived from alignment at Contig_9:1803915..1807056- (Tribonema minus UTEX_B_3156 )
AAGCAGCGTATTGGGCTGATCATGGGCCTGGGGCCGGAAGTGAAATCGCT
TTTGGGAGGTGCAGGTGCGCATGTTGCATGTTGATGTTGCTGCACACACA
CCGTAAATTACTGCAAGGATCAATCACAGTTCCGCTGTTCAGATGACGCC
ACTGCACCATAGTGAATTTATGCTGTCTATTATTGAAGTCCTATGCCGCG
TGCAAGTTGGACGGAGCATCTACACGTGCGAGCAAAGTGCTGGTATCAGC
ATGTGCTGAAGCAGTCTGCTACTGAGCGCTTTGGGGCTCTGATCAAGCTC
TGGTAATGCTGTCGGGACAGTCCCTGTGATCAAATGATGTGTCAGCGTGT
CACCTAGTGCGCACGGGCACCACGCACAACGTGTTGCGGCTTGTTGCAGC
ATGCGGTCATGTGACAGTGCATGCCATTGCTAAGTTCTCAAGCTGTGGAG
CAACTTCACCTCTCTCTCTCCTACTCTCCTAAGCCAAAGGTGTGCGCATG
GGCACGTTGCCATTCAACCTTATATGCGCTTTCCTCTGCGCATTTCGTGG
AAGGTGCCAGGGCAGTCAGCGGCATCCAAACATCCTGCCCACAGAAATGC
AAAATTCCCAGATGTCAGCCTTGATTTCATCACCAACCTATAAAGTCAAA
CCTTTTCATAGGTTGCTGAAGCTAGTTGTTTTTTACTGTTCAAATTGTGC
TTCTCGATAAAGACAAATCTTTTATAGGTTGCTGAAGCTAGTTGTTTTTG
ACTGTTCACATTGTGCTTCCGTAAAAAGCACCAAACGTGCATTCATCACA
GTGCCTTTACCACAGTGTGACTCTGCCACATATTGGTATTGCAAAACTGG
TATTGCAAAACTGCAGCCGTCACCTTTTGGCGAGCAATGTATGGTAGCTC
AAATTTTGTGATGCTGCTGCTTCTGTCCTCAGACCTGGAGGCACCGTTCA
ACGAGGCGGCTTCAGCTACAGTCATTCTGGTCAGGTGAGAGTCTGTTGTA
CCAACCCTAATTTTCGCGTTGGTGCCATGTAAGCTTCTCGTTGTGAATGG
CATTTTTGAAAGGAGTTGCCACGTGCCACTTCAGCTGGAAGGCTTGTCAT
CGGGCACTGCTGACTGCACCTCTTGGGCATTTATCATGTTTCCCCCCGCG
CTCTAATTGCTACGCCAAGTCGCTACTTTGGTCAGCGGTGTGTCGATGTC
AACGCGTGGCAATGCGTGGTGCTGCAGCGCCTTTGTGCTTCCTTGAAGAG
TGGCACCTGGTCTGTGATGGTGCTGTTCATGCAGACCAGTGGTCTCGTGG
ACCTCGTCGCTGTTACAGACAGTGAAGCGATCCGAACTTCTCCAGCAATA
TTATTTTTTTTTTTTGCTTACTTAAGATGAAGTTTTTTTCTTCTCGAGAG
AGCTGTTCTTCAGCTGTTTCTGCCACGTTCCGGCCTGCTCTGGCCTTCTT
CTGGCCTCTTCGGTCCCCGACTGCGCAAGGTCATGTGGCTGTTCGCTCGT
GATTGCGCACACAACCCGCCCGCCACTCAACCTGCAATCTGCAGTACAAT
GATTCAATTGTATTTTGTCACATTGCTTGCTGGCACACCTGCGCGCAGCA
CGGAGGCGCCTGCTGACTTCAACACAAACTTCAACACAAGCTTCAACACA
GCAACATTGATGTGGGTGTTGAATTTGTTTGACGCCATCCTGAATGCAGC
ACGGAGGCAACTGCTGATGAGCTGCAGGAGCTGGCGGAGGGTCTGCAGCC
TAGTGGCGTGGTTGATTAGGGCGCACCTCTGCGGCAGAGAGGAATCAAGG
TGTGTACACTGACAACCACAACGAACTGTTGAAGTACGCACACAGCAAAC
TGCTGAAGTATGCGCAGCACAAATGTTGAAGTATGTGCCGCAAACTTTTG
AAGTACGTGTATAGCGAACTGTTGAAGTATGCGCGAGTGAACTGTTGAAG
GGCCGTCGAGTATGGCTTCTCTGACGTGCCCCGATTGGGCTCCCGAGGGT
CCTTCACCAATCGAGCCGCGTCTTTTCACTGCATTGACGATATTGAACGC
CTTCAGAGTAAAAGCATCTTGCAGAAAGCTGGCGGGATGAATTGAGCAAT
ACGGCAGTGCGTCGCATTCTGACTGGCGCTTGAAACACCAGCAGCAACAG
CCCCGAATCGCCGTGTGTTGCCTCTCCATCGAATGCACTTGTAACGTGTA
TTTGAAGTACTTGATCCGTTGGGGCATGTGTTTGACCAGCTTGGCGCGCA
AACACATGCCCTTCAAACACAGTGCAGGTGCGTTGGCGAGACCATCAGCG
CATTTGCGTTTTGCCGTTTTGCATTGATACAGTGTAAGGCTCATCACCAC
CAAGACTAGACATAGGGGATTCTGTCTGCCTGAGAGCCCTTAATGAGGTG
TCTTCTAGGTCACATCTGCACGACATTCCGCCCATTGTCAGCAGTTTGCC
TAGCGTGCGCTATTAGAATGATTGTTCTGAAACTGTAATTCGAATTGCTA
GCAGGGACTTTCTCCTGCGGCACGGTCCCCGGGCTGATGGTGAGCGTGGC
TTACCATCTTAGGGTTAGGGTGAGGGTTAGGCACGTTGCCACGCTGCAGC
GGCGGCATAAGGGATGTGCTGATGCGCCGTGATTTTTACCACTCCTGCGT
AAAAGGGCTGCTACAGGAGCGCTGATGCAAGCCACGCCTTGCAACCGGCA
GATGCTTACACTATTCCTAACCCTAGCCCAACTCTGTCCGAACGCTTCAG
CCACGTGCCATTCCTGATGTATGTTGTATCTCGCTGCTCAATCCTGTGCC
CAAACTGGCAGCGGAGGCGGCGATACGGGGCGCGCCGCGCTGAGCCGTGC
TGCTTGCGGGGGACTGAATCAGATGTCATCGCTCAGGAGGGGGTCGCACA
GCTGCTTGGGGGGCAGCCGCTGGGGGTGCACGTCGCGAAGGCGCTGGAGC
AGCGGAGCAGGTATGTATGTATTGTATGTATGTATGTACCGTTGAAGATG
ATTCAAGGTGCTGCAATTGATGTTTGAAGTTGGGTCGGAATCTGGCTTAC
TAGTGTCATCGCTCAGGAGGGGGTCGCTCAAGCTGCTCGGCGGACAACCG
CTGGGATTGCACGTCGCAAAGGTGCTGCAGCGGAGCAGGTAA
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Coding sequence (CDS) from alignment at Contig_9:1803915..1807056-

>mRNA_3671 ID=mRNA_3671|Name=jgi.p|Trimin1|347266|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=306bp|location=Sequence derived from alignment at Contig_9:1803915..1807056- (Tribonema minus UTEX_B_3156 )
ATGAGCTGCAGGAGCTGGCGGAGGGTCTGCAGCCTAGTGGCGTGGTTGAT
TAGGGCGCACCTCTGCGGCAGAGAGGAATCAAGCGGAGGCGGCGATACGG
GGCGCGCCGCGCTGAGCCGTGCTGCTTGCGGGGGACTGAATCAGATGTCA
TCGCTCAGGAGGGGGTCGCACAGCTGCTTGGGGGGCAGCCGCTGGGGGTG
CACGTCGCGAAGGCGCTGGAGCAGCGGAGCAGGAGGGGGTCGCTCAAGCT
GCTCGGCGGACAACCGCTGGGATTGCACGTCGCAAAGGTGCTGCAGCGGA
GCAGGT
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