mRNA_365 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|134699
Unique NamemRNA_365
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|134699 vs. uniprot
Match: A0A835YWU5_9STRA (Histone H3, embryonic (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWU5_9STRA)

HSP 1 Score: 237 bits (604), Expect = 8.470e-79
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:    1 MARTRQTAAKSTGGKAPRKQLATKAARAGNREPKRPHRYRPGTVALREIRKYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAGRVTIMPKDIQLARRL 384
            MARTRQTAAKSTGGKAPRKQLATKAARAGNREPKRPHRYRPGTVALREIRKYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAGRVTIMPKDIQLARRL
Sbjct:    1 MARTRQTAAKSTGGKAPRKQLATKAARAGNREPKRPHRYRPGTVALREIRKYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAGRVTIMPKDIQLARRL 128
[Close]
BLAST of jgi.p|Trimin1|134699 vs. uniprot
Match: G0NNI2_CAEBE (Histone H3 n=10 Tax=Eukaryota TaxID=2759 RepID=G0NNI2_CAEBE)

HSP 1 Score: 204 bits (518), Expect = 1.420e-65
Identity = 111/131 (84.73%), Postives = 121/131 (92.37%), Query Frame = 1 
Query:    1 MARTRQTAAKSTGGKAPRKQLATKAARAGNREP---KRPHRYRPGTVALREIRKYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAGRVTIMPKDIQLARRL 384
            MART+QTA KSTGGKAPRKQLATKAAR   + P   K+PHRYRPGTVALREIR+YQKSTELL+RK+PFQR+VRE+AQDFKTDLRFQ SAV+ALQEAAEAYLVGLFEDTNLCAIHA RVTIMPKDIQLARR+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKDVKVPGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131
[Close]
BLAST of jgi.p|Trimin1|134699 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 203 bits (517), Expect = 2.020e-65
Identity = 112/131 (85.50%), Postives = 120/131 (91.60%), Query Frame = 1 
Query:    1 MARTRQTAAKSTGGKAPRKQLATKAARAGNREP---KRPHRYRPGTVALREIRKYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAGRVTIMPKDIQLARRL 384
            MART+QTA KSTGGKAPRKQLATKAAR         K+PHRYRPGTVALREIR+YQKSTELL+RK+PFQR+VRE+AQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHA RVTIMPKDIQLARR+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131
[Close]
BLAST of jgi.p|Trimin1|134699 vs. uniprot
Match: E1ZSZ5_CHLVA (Histone H3 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZSZ5_CHLVA)

HSP 1 Score: 203 bits (516), Expect = 2.140e-65
Identity = 110/128 (85.94%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:    1 MARTRQTAAKSTGGKAPRKQLATKAARAGNREPKRPHRYRPGTVALREIRKYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAGRVTIMPKDIQLARRL 384
            MART+QTA KSTGGKAPRKQLATKA       P++PHRYRPGTVALREIRKYQKSTELL+RK+PFQR+VRE+AQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHA RVTIMPKDIQLARR+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKA------RPQKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 122
[Close]
BLAST of jgi.p|Trimin1|134699 vs. uniprot
Match: E1ZFV1_CHLVA (Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1ZFV1_CHLVA)

HSP 1 Score: 202 bits (514), Expect = 5.800e-65
Identity = 112/131 (85.50%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 MARTRQTAAKSTGGKAPRKQLATKAARAGNREP---KRPHRYRPGTVALREIRKYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAGRVTIMPKDIQLARRL 384
            MART+QTA KSTGGKAPRKQLATKAAR         K+PHRYRPGTVALREIRKYQKSTELL+RK+PFQR+VRE+AQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHA RVTIMPKDIQLARR+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131
[Close]
BLAST of jgi.p|Trimin1|134699 vs. uniprot
Match: E1ZR66_CHLVA (Histone H3 n=10 Tax=Eukaryota TaxID=2759 RepID=E1ZR66_CHLVA)

HSP 1 Score: 202 bits (514), Expect = 5.800e-65
Identity = 112/131 (85.50%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 MARTRQTAAKSTGGKAPRKQLATKAARAGNREP---KRPHRYRPGTVALREIRKYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAGRVTIMPKDIQLARRL 384
            MART+QTA KSTGGKAPRKQLATKAAR         K+PHRYRPGTVALREIRKYQKSTELL+RK+PFQR+VRE+AQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHA RVTIMPKDIQLARR+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131
[Close]
BLAST of jgi.p|Trimin1|134699 vs. uniprot
Match: A0A3R7LZR1_PENVA (Histone H3 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7LZR1_PENVA)

HSP 1 Score: 202 bits (513), Expect = 6.350e-65
Identity = 109/128 (85.16%), Postives = 119/128 (92.97%), Query Frame = 1 
Query:    1 MARTRQTAAKSTGGKAPRKQLATKAARAGNREPKRPHRYRPGTVALREIRKYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAGRVTIMPKDIQLARRL 384
            MART+QTA KSTGGKAPRKQLATKAAR      K+PHRYRPGTVALREIR+YQKSTELL+RK+PFQR+VRE+AQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHA RVTIMPKDIQLARR+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARV-----KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 123
[Close]
BLAST of jgi.p|Trimin1|134699 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 202 bits (514), Expect = 7.050e-65
Identity = 111/131 (84.73%), Postives = 120/131 (91.60%), Query Frame = 1 
Query:    1 MARTRQTAAKSTGGKAPRKQLATKAARAGNREP---KRPHRYRPGTVALREIRKYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAGRVTIMPKDIQLARRL 384
            MART+QTA KSTGGKAPRKQLATKAAR         K+PHRYRPGTVALREIR+YQKSTELL+RK+PFQR+VRE+AQDFKTDLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHA RVTIMPKDIQLARR+
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 137
[Close]
BLAST of jgi.p|Trimin1|134699 vs. uniprot
Match: A0A7K9FU69_STEPR (Histone H3 (Fragment) n=2 Tax=Aves TaxID=8782 RepID=A0A7K9FU69_STEPR)

HSP 1 Score: 202 bits (513), Expect = 8.230e-65
Identity = 110/131 (83.97%), Postives = 120/131 (91.60%), Query Frame = 1 
Query:    1 MARTRQTAAKSTGGKAPRKQLATKAARAGNREP---KRPHRYRPGTVALREIRKYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAGRVTIMPKDIQLARRL 384
            MART+QTA KSTGGKAPRKQLATKAAR   R     K+PHRYRPGTVALREIR+YQKSTELL+RK+PFQR+VRE+AQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHA RVTIMPKDIQLARR+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSARATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131
[Close]
BLAST of jgi.p|Trimin1|134699 vs. uniprot
Match: A0A7S3FY28_9SPIT (Histone H3 (Fragment) n=7 Tax=Eukaryota TaxID=2759 RepID=A0A7S3FY28_9SPIT)

HSP 1 Score: 202 bits (513), Expect = 8.510e-65
Identity = 111/131 (84.73%), Postives = 119/131 (90.84%), Query Frame = 1 
Query:    1 MARTRQTAAKSTGGKAPRKQLATKAARAGNREP---KRPHRYRPGTVALREIRKYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAGRVTIMPKDIQLARRL 384
            MART+QTA KSTGGKAPRKQLATKAAR         K+PHRYRPGTVALREIRKYQKSTELL+RK+PFQR+VRE+AQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHA RVTIMPKD+QLARR+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRI 131
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|134699 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWU5_9STRA8.470e-79100.00Histone H3, embryonic (Fragment) n=1 Tax=Tribonema... [more]
G0NNI2_CAEBE1.420e-6584.73Histone H3 n=10 Tax=Eukaryota TaxID=2759 RepID=G0N... [more]
W4GZ05_9STRA2.020e-6585.50Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
E1ZSZ5_CHLVA2.140e-6585.94Histone H3 n=1 Tax=Chlorella variabilis TaxID=5540... [more]
E1ZFV1_CHLVA5.800e-6585.50Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1Z... [more]
E1ZR66_CHLVA5.800e-6585.50Histone H3 n=10 Tax=Eukaryota TaxID=2759 RepID=E1Z... [more]
A0A3R7LZR1_PENVA6.350e-6585.16Histone H3 n=1 Tax=Penaeus vannamei TaxID=6689 Rep... [more]
A0A6V1P6C6_HETAK7.050e-6584.73Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A7K9FU69_STEPR8.230e-6583.97Histone H3 (Fragment) n=2 Tax=Aves TaxID=8782 RepI... [more]
A0A7S3FY28_9SPIT8.510e-6584.73Histone H3 (Fragment) n=7 Tax=Eukaryota TaxID=2759... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1010443..1010826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|134699|gw1.3.150.1
BRITEko00000,ko00001,ko03036,ko04147
KEGG Pathwayko05034,ko05202,ko05203,ko05322,map05034,map05202,map05203,map05322
KEGG koko:K11253,ko:K11254
DescriptionHistone H3
COG categoryB
Max annot lvl33208|Metazoa
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota,39ZTV@33154|Opisthokonta,3BPDH@33208|Metazoa,3D6BK@33213|Bilateria,40D1P@6231|Nematoda,1KVNG@119089|Chromadorea
Evalue2.34e-66
Seed ortholog135651.CBN26301
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistone H3
Ec32 orthologEc-07_000500.1
TranscriptId135021
TrackFilteredModels1
ProteinId134699
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134699gene_365Tribonema minus UTEX_B_3156 geneContig_3 1010443..1010826 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_365_1exon_365_1Tribonema minus UTEX_B_3156 exonContig_3 1010443..1010826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_365CDS_365Tribonema minus UTEX_B_3156 CDSContig_3 1010443..1010826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|134699Trimin1|134699|gw1.3.150.1Tribonema minus UTEX_B_3156 polypeptideContig_3 1010443..1010826 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_365 ID=mRNA_365|Name=jgi.p|Trimin1|134699|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_3:1010443..1010826- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCGGACGAGACAGACGGCGGCGAAGTCCACCGGCGGCAAGGCGCC
CCGCAAGCAGTTGGCGACCAAGGCGGCTCGGGCCGGCAACCGCGAGCCGA
AGAGGCCCCACCGCTACCGTCCCGGCACCGTGGCGCTGAGAGAGATACGG
AAGTACCAGAAGAGCACGGAGCTCCTGCTGCGCAAGATGCCCTTCCAGAG
GGTGGTGCGCGAGGTGGCTCAGGATTTCAAGACCGACCTGCGGTTCCAGG
GCTCCGCCGTGCTGGCGCTCCAGGAGGCCGCGGAGGCTTACCTGGTGGGC
CTCTTCGAGGACACCAATCTCTGCGCCATCCACGCGGGGCGGGTCACCAT
CATGCCGAAGGACATCCAGCTCGCCCGTCGACTG
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protein sequence of jgi.p|Trimin1|134699

>Trimin1|134699|gw1.3.150.1 ID=Trimin1|134699|gw1.3.150.1|Name=jgi.p|Trimin1|134699|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
MARTRQTAAKSTGGKAPRKQLATKAARAGNREPKRPHRYRPGTVALREIR
KYQKSTELLLRKMPFQRVVREVAQDFKTDLRFQGSAVLALQEAAEAYLVG
LFEDTNLCAIHAGRVTIMPKDIQLARRL
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mRNA from alignment at Contig_3:1010443..1010826-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_365 ID=mRNA_365|Name=jgi.p|Trimin1|134699|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_3:1010443..1010826- (Tribonema minus UTEX_B_3156 )
ATGGCCCGGACGAGACAGACGGCGGCGAAGTCCACCGGCGGCAAGGCGCC
CCGCAAGCAGTTGGCGACCAAGGCGGCTCGGGCCGGCAACCGCGAGCCGA
AGAGGCCCCACCGCTACCGTCCCGGCACCGTGGCGCTGAGAGAGATACGG
AAGTACCAGAAGAGCACGGAGCTCCTGCTGCGCAAGATGCCCTTCCAGAG
GGTGGTGCGCGAGGTGGCTCAGGATTTCAAGACCGACCTGCGGTTCCAGG
GCTCCGCCGTGCTGGCGCTCCAGGAGGCCGCGGAGGCTTACCTGGTGGGC
CTCTTCGAGGACACCAATCTCTGCGCCATCCACGCGGGGCGGGTCACCAT
CATGCCGAAGGACATCCAGCTCGCCCGTCGACTG
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Coding sequence (CDS) from alignment at Contig_3:1010443..1010826-

>mRNA_365 ID=mRNA_365|Name=jgi.p|Trimin1|134699|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_3:1010443..1010826- (Tribonema minus UTEX_B_3156 )
ATGGCCCGGACGAGACAGACGGCGGCGAAGTCCACCGGCGGCAAGGCGCC
CCGCAAGCAGTTGGCGACCAAGGCGGCTCGGGCCGGCAACCGCGAGCCGA
AGAGGCCCCACCGCTACCGTCCCGGCACCGTGGCGCTGAGAGAGATACGG
AAGTACCAGAAGAGCACGGAGCTCCTGCTGCGCAAGATGCCCTTCCAGAG
GGTGGTGCGCGAGGTGGCTCAGGATTTCAAGACCGACCTGCGGTTCCAGG
GCTCCGCCGTGCTGGCGCTCCAGGAGGCCGCGGAGGCTTACCTGGTGGGC
CTCTTCGAGGACACCAATCTCTGCGCCATCCACGCGGGGCGGGTCACCAT
CATGCCGAAGGACATCCAGCTCGCCCGTCGACTG
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