mRNA_3655 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|97780
Unique NamemRNA_3655
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|97780 vs. uniprot
Match: A0A836C7N2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7N2_9STRA)

HSP 1 Score: 431 bits (1107), Expect = 9.280e-149
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1 
Query:  292 MLAKIAHAETTAYRHRAAHLLRXXXXXXXXXXXXXXXXRRHNGRGGVNMAPALCRRRRHCAAAPPWTGRVRAHWRRRLGKKHNLRGATAQQGQHASAATSLCPRVRRAVINKDQNCAPSFAPALMWWEGRGEAQPLEHVRVAARCCPQCASPLAVTLMRGGAREGGAQARGGTDERGLLGGETTLRGXXXXXXXXXXXXNDHXXXXXXXXXXXXXXXXXXXXRVFKGGELVPLAHPRSRAAMSRGRLRRRFSSYQRRCRICCCVSDV 1092
            MLAKIAHAETTAYRHRAAHLLRXXXXXXXXXXXXXXXXRRHNGRGGVNMAPALCRRRRHCAAAPPWTGRVRAHWRRRLGKKHNLRGATAQQGQHASAATSLCPRVRRAVINKDQNCAPSFAPALMWWEGRGEAQPLEHVRVAARCCPQCASPLAVTLMRGGAREGGAQARGGTDERGLLGGETTLRGXXXXXXXXXXXXNDHXXXXXXXXXXXXXXXXXXXXRVFKGGELVPLAHPRSRAAMSRGRLRRRFSSYQRRCRICCCVSDV
Sbjct:    1 MLAKIAHAETTAYRHRAAHLLRXXXXXXXXXXXXXXXXRRHNGRGGVNMAPALCRRRRHCAAAPPWTGRVRAHWRRRLGKKHNLRGATAQQGQHASAATSLCPRVRRAVINKDQNCAPSFAPALMWWEGRGEAQPLEHVRVAARCCPQCASPLAVTLMRGGAREGGAQARGGTDERGLLGGETTLRGXXXXXXXXXXXXNDHXXXXXXXXXXXXXXXXXXXXRVFKGGELVPLAHPRSRAAMSRGRLRRRFSSYQRRCRICCCVSDV 267
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|97780 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C7N2_9STRA9.280e-149100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:1580347..1581539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|97780|CE97779_1695
Hectar predicted targeting categorymitochondrion
TranscriptId98102
TrackFilteredModels1
ProteinId97780
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|97780gene_3655Tribonema minus UTEX_B_3156 geneContig_9 1580347..1581539 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3655_1exon_3655_1Tribonema minus UTEX_B_3156 exonContig_9 1580347..1581539 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3655UTR5_3655Tribonema minus UTEX_B_3156 five_prime_UTRContig_9 1580347..1580637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3655CDS_3655Tribonema minus UTEX_B_3156 CDSContig_9 1580638..1581441 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3655UTR3_3655Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 1581442..1581539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|97780Trimin1|97780|CE97779_1695Tribonema minus UTEX_B_3156 polypeptideContig_9 1580638..1581441 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3655 ID=mRNA_3655|Name=jgi.p|Trimin1|97780|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1193bp|location=Sequence derived from alignment at Contig_9:1580347..1581539+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAATGTACAGAGTATGTATATTACGCATGTGCAAGCGCGTGTGTTTGCAC
GAGACACACGTTCCAAAGCTCCAACCCGAGTGCGCGTGTGAAATCTGTTT
GCTGCATCCTTGCGTCCATCTATCTAGGGAGTAGACACAGACACGCCCAC
GGCTCGCCGTCTGAAACCCCAACCACAAAACTACTTGCACCCGGCGCGCG
CCACTGCGTGTTGTTTCCCTGCACCAATGTGGCTTAAACCTTCCAGAGGG
GGAGAGAAGAGAGAGAGATATGGCACCTGCACCTGCACCGCATGTTGGCG
AAAATCGCACATGCAGAAACGACGGCGTATCGTCATCGGGCGGCGCATCT
GCTGCGGCGCCGCCGGATGCAACCGCCCCATACACAAGAGTCGACCAAGA
GCAGCAGGCGGCACAACGGGAGAGGGGGGGTAAACATGGCCCCCGCTCTC
TGCCGCCGCCGCCGCCACTGCGCAGCAGCACCGCCATGGACGGGCCGGGT
GCGCGCGCATTGGCGCCGTCGACTAGGGAAGAAACACAATTTGCGAGGCG
CAACTGCGCAGCAGGGGCAGCATGCCTCAGCAGCCACCAGCCTGTGCCCG
CGAGTGCGCCGCGCCGTGATAAACAAAGACCAAAACTGCGCGCCGAGCTT
CGCCCCCGCCCTAATGTGGTGGGAGGGAAGGGGGGAAGCGCAGCCGCTAG
AGCACGTTCGCGTCGCCGCGCGCTGCTGCCCGCAGTGTGCGTCGCCGCTT
GCCGTCACTCTCATGAGGGGGGGCGCGCGCGAGGGGGGCGCGCAGGCACG
CGGCGGGACGGACGAAAGGGGGCTGTTGGGGGGGGAGACCACACTTCGGG
GGGGGGGGGGGGGGGCTTACTACGACTACCAAACCACAAATGACCATCAA
GAGAGAGAGGGGGCGGGGCCAGGAACTGGCCACCGCCGCCACCACTACCA
CCACCACAGGGTATTCAAGGGGGGGGAACTTGTCCCTCTCGCGCACCCCC
GCAGCCGCGCTGCTATGAGCCGCGGCCGCCTCCGCCGCCGTTTTTCTTCG
TATCAGCGGCGCTGCCGCATCTGTTGCTGTGTGTCTGATGTCTAGGCGGG
GACGGTTACTACGATATGTTGTGGCGTGCGCTGCGCGCGGCACCGTGTGT
GTGTAGGTTTGTGTGTCGGGCTGATGCGCACGATGCGCAGGAG
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protein sequence of jgi.p|Trimin1|97780

>Trimin1|97780|CE97779_1695 ID=Trimin1|97780|CE97779_1695|Name=jgi.p|Trimin1|97780|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=268bp
MLAKIAHAETTAYRHRAAHLLRRRRMQPPHTQESTKSSRRHNGRGGVNMA
PALCRRRRHCAAAPPWTGRVRAHWRRRLGKKHNLRGATAQQGQHASAATS
LCPRVRRAVINKDQNCAPSFAPALMWWEGRGEAQPLEHVRVAARCCPQCA
SPLAVTLMRGGAREGGAQARGGTDERGLLGGETTLRGGGGGAYYDYQTTN
DHQEREGAGPGTGHRRHHYHHHRVFKGGELVPLAHPRSRAAMSRGRLRRR
FSSYQRRCRICCCVSDV*
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mRNA from alignment at Contig_9:1580347..1581539+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3655 ID=mRNA_3655|Name=jgi.p|Trimin1|97780|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1193bp|location=Sequence derived from alignment at Contig_9:1580347..1581539+ (Tribonema minus UTEX_B_3156 )
CAATGTACAGAGTATGTATATTACGCATGTGCAAGCGCGTGTGTTTGCAC
GAGACACACGTTCCAAAGCTCCAACCCGAGTGCGCGTGTGAAATCTGTTT
GCTGCATCCTTGCGTCCATCTATCTAGGGAGTAGACACAGACACGCCCAC
GGCTCGCCGTCTGAAACCCCAACCACAAAACTACTTGCACCCGGCGCGCG
CCACTGCGTGTTGTTTCCCTGCACCAATGTGGCTTAAACCTTCCAGAGGG
GGAGAGAAGAGAGAGAGATATGGCACCTGCACCTGCACCGCATGTTGGCG
AAAATCGCACATGCAGAAACGACGGCGTATCGTCATCGGGCGGCGCATCT
GCTGCGGCGCCGCCGGATGCAACCGCCCCATACACAAGAGTCGACCAAGA
GCAGCAGGCGGCACAACGGGAGAGGGGGGGTAAACATGGCCCCCGCTCTC
TGCCGCCGCCGCCGCCACTGCGCAGCAGCACCGCCATGGACGGGCCGGGT
GCGCGCGCATTGGCGCCGTCGACTAGGGAAGAAACACAATTTGCGAGGCG
CAACTGCGCAGCAGGGGCAGCATGCCTCAGCAGCCACCAGCCTGTGCCCG
CGAGTGCGCCGCGCCGTGATAAACAAAGACCAAAACTGCGCGCCGAGCTT
CGCCCCCGCCCTAATGTGGTGGGAGGGAAGGGGGGAAGCGCAGCCGCTAG
AGCACGTTCGCGTCGCCGCGCGCTGCTGCCCGCAGTGTGCGTCGCCGCTT
GCCGTCACTCTCATGAGGGGGGGCGCGCGCGAGGGGGGCGCGCAGGCACG
CGGCGGGACGGACGAAAGGGGGCTGTTGGGGGGGGAGACCACACTTCGGG
GGGGGGGGGGGGGGGCTTACTACGACTACCAAACCACAAATGACCATCAA
GAGAGAGAGGGGGCGGGGCCAGGAACTGGCCACCGCCGCCACCACTACCA
CCACCACAGGGTATTCAAGGGGGGGGAACTTGTCCCTCTCGCGCACCCCC
GCAGCCGCGCTGCTATGAGCCGCGGCCGCCTCCGCCGCCGTTTTTCTTCG
TATCAGCGGCGCTGCCGCATCTGTTGCTGTGTGTCTGATGTCTAGGCGGG
GACGGTTACTACGATATGTTGTGGCGTGCGCTGCGCGCGGCACCGTGTGT
GTGTAGGTTTGTGTGTCGGGCTGATGCGCACGATGCGCAGGAG
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Coding sequence (CDS) from alignment at Contig_9:1580347..1581539+

>mRNA_3655 ID=mRNA_3655|Name=jgi.p|Trimin1|97780|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=804bp|location=Sequence derived from alignment at Contig_9:1580347..1581539+ (Tribonema minus UTEX_B_3156 )
ATGTTGGCGAAAATCGCACATGCAGAAACGACGGCGTATCGTCATCGGGC
GGCGCATCTGCTGCGGCGCCGCCGGATGCAACCGCCCCATACACAAGAGT
CGACCAAGAGCAGCAGGCGGCACAACGGGAGAGGGGGGGTAAACATGGCC
CCCGCTCTCTGCCGCCGCCGCCGCCACTGCGCAGCAGCACCGCCATGGAC
GGGCCGGGTGCGCGCGCATTGGCGCCGTCGACTAGGGAAGAAACACAATT
TGCGAGGCGCAACTGCGCAGCAGGGGCAGCATGCCTCAGCAGCCACCAGC
CTGTGCCCGCGAGTGCGCCGCGCCGTGATAAACAAAGACCAAAACTGCGC
GCCGAGCTTCGCCCCCGCCCTAATGTGGTGGGAGGGAAGGGGGGAAGCGC
AGCCGCTAGAGCACGTTCGCGTCGCCGCGCGCTGCTGCCCGCAGTGTGCG
TCGCCGCTTGCCGTCACTCTCATGAGGGGGGGCGCGCGCGAGGGGGGCGC
GCAGGCACGCGGCGGGACGGACGAAAGGGGGCTGTTGGGGGGGGAGACCA
CACTTCGGGGGGGGGGGGGGGGGGCTTACTACGACTACCAAACCACAAAT
GACCATCAAGAGAGAGAGGGGGCGGGGCCAGGAACTGGCCACCGCCGCCA
CCACTACCACCACCACAGGGTATTCAAGGGGGGGGAACTTGTCCCTCTCG
CGCACCCCCGCAGCCGCGCTGCTATGAGCCGCGGCCGCCTCCGCCGCCGT
TTTTCTTCGTATCAGCGGCGCTGCCGCATCTGTTGCTGTGTGTCTGATGT
CTAG
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