mRNA_3653 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|338063
Unique Name	mRNA_3653
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|338063 vs. uniprot
Match: A0A836C8G4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G4_9STRA)

HSP 1 Score: 539 bits (1389), Expect = 7.710e-188
Identity = 449/449 (100.00%), Postives = 449/449 (100.00%), Query Frame = 1

Query:    1 MIEIVVNVINELTRWRGLPLERLQECATTAARHVLDHLRELLVRAEDQLRMAYAALQAFREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLRXXXXXXXXXXALRQLARDAAALPRNGAKAAAALFRELPGGXXXXXAPAWRWSHAGRARCYWAYSRPHLGVRDSAPWQEKEAAAAVYYRTHTRQEVRAAKAAAERPCEPAAALAAIEPAFASPFVGSAQEVWPSDNYPWGRQAWADIDDILRQKDEAAQKPGYSKAKVFFYPKSYGHIEPPKQDPLGAALSAVAGIVVHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVVXXXXXXXXXXXXXXXXXXXXXXXXXXCGIGAFANGIGSFFXXXXXXXXXXXXXXEKAQQSRGRADTGSLPPNGGAEGGGRRHRSPSPSA 1347
            MIEIVVNVINELTRWRGLPLERLQECATTAARHVLDHLRELLVRAEDQLRMAYAALQAFREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLRXXXXXXXXXXALRQLARDAAALPRNGAKAAAALFRELPGGXXXXXAPAWRWSHAGRARCYWAYSRPHLGVRDSAPWQEKEAAAAVYYRTHTRQEVRAAKAAAERPCEPAAALAAIEPAFASPFVGSAQEVWPSDNYPWGRQAWADIDDILRQKDEAAQKPGYSKAKVFFYPKSYGHIEPPKQDPLGAALSAVAGIVVHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVVXXXXXXXXXXXXXXXXXXXXXXXXXXCGIGAFANGIGSFFXXXXXXXXXXXXXXEKAQQSRGRADTGSLPPNGGAEGGGRRHRSPSPSA
Sbjct:    1 MIEIVVNVINELTRWRGLPLERLQECATTAARHVLDHLRELLVRAEDQLRMAYAALQAFREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLRXXXXXXXXXXALRQLARDAAALPRNGAKAAAALFRELPGGXXXXXAPAWRWSHAGRARCYWAYSRPHLGVRDSAPWQEKEAAAAVYYRTHTRQEVRAAKAAAERPCEPAAALAAIEPAFASPFVGSAQEVWPSDNYPWGRQAWADIDDILRQKDEAAQKPGYSKAKVFFYPKSYGHIEPPKQDPLGAALSAVAGIVVHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVVXXXXXXXXXXXXXXXXXXXXXXXXXXCGIGAFANGIGSFFXXXXXXXXXXXXXXEKAQQSRGRADTGSLPPNGGAEGGGRRHRSPSPSA 449

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|338063 vs. uniprot

BLAST of jgi.p|Trimin1|338063 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836C8G4_9STRA	7.710e-188	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_9	contig	Contig_9:1571722..1575533 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|338063\|MIX46826_4_16
Hectar predicted targeting category	other localisation
TranscriptId	338385
Track	FilteredModels1
ProteinId	338063

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|338063	gene_3653	Tribonema minus UTEX_B_3156	gene	Contig_9 1571722..1575533 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|338063	Trimin1\|338063\|MIX46826_4_16	Tribonema minus UTEX_B_3156	polypeptide	Contig_9 1571738..1575533 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3653_5	exon_3653_5	Tribonema minus UTEX_B_3156	exon	Contig_9 1571722..1572274 -
exon_3653_4	exon_3653_4	Tribonema minus UTEX_B_3156	exon	Contig_9 1573022..1573114 -
exon_3653_3	exon_3653_3	Tribonema minus UTEX_B_3156	exon	Contig_9 1573831..1573986 -
exon_3653_2	exon_3653_2	Tribonema minus UTEX_B_3156	exon	Contig_9 1574607..1575019 -
exon_3653_1	exon_3653_1	Tribonema minus UTEX_B_3156	exon	Contig_9 1575383..1575533 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_3653	UTR3_3653	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_9 1571722..1571737 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3653	CDS_3653	Tribonema minus UTEX_B_3156	CDS	Contig_9 1575383..1575533 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_9:1571722..1575533-
coding sequence from alignment at Contig_9:1571722..1575533-

spliced messenger RNA

>mRNA_3653 ID=mRNA_3653|Name=jgi.p|Trimin1|338063|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1366bp|location=Sequence derived from alignment at Contig_9:1571722..1575533- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGAAATCGTCGTCAACGTTATCAACGAGCTGACCCGCTGGCGGGG
GCTGCCGTTGGAGCGCCTTCAGGAATGTGCGACCACCGCTGCTCGCCATG
TCCTTGACCACCTTCGGGAGCTCCTGGTCCGGGCTGAGGACCAGCTGCGC
ATGGCGTACGCCGCGCTCCAGGCCTTCCGCGAGGAGCAGCGCCGCAACGA
CGAGCGCCGCCGCCGCAGCCGCGCAATGCCGCCCGTCGCCTCCGCCCGCG
CGCGCGCCGCCGCCGCCGCGCCCTTCGCCGCGCTCCCCGGCGCCGCCACC
GCCGCGCCGCCGCCGCCGCCACGGCCGCTGCGCGCGGGCGCCGCGCGCGC
CGCCGCCGTGGCGGCGCTGCGGCAGCTGGCGCGCGACGCTGCCGCGCTGC
CGCGGAACGGCGCAAAGGCGGCGGCGGCGCTGTTTCGGGAGCTGCCCGGC
GGCGGCGCGGCGGCCGCGGCGCCGGCGTGGCGCTGGTCGCACGCGGGGCG
CGCGCGCTGCTACTGGGCGTACTCCCGGCCGCACCTCGGCGTGCGCGACT
CTGCGCCTTGGCAAGAGAAGGAGGCGGCGGCAGCGGTGTACTACCGCACG
CACACGCGCCAGGAGGTCAGGGCCGCCAAGGCTGCTGCCGAGAGGCCTTG
CGAGCCGGCGGCGGCGCTGGCTGCAATTGAACCCGCTTTCGCATCCCCGT
TTGTGGGCAGCGCTCAGGAGGTCTGGCCGTCAGACAACTACCCATGGGGG
AGGCAGGCCTGGGCCGACATAGACGACATACTGCGCCAGAAGGACGAGGC
AGCACAGAAGCCGGGCTACTCCAAGGCCAAGGTCTTCTTCTACCCCAAGA
GCTACGGCCACATCGAGCCCCCCAAGCAGGACCCCCTCGGCGCCGCACTG
AGCGCTGTCGCCGGCATTGTCGTCCACACCGCTCAGCACGCGGGCGAGCA
CGGCGCCGCCTCCGCCGCCGGCGCCGCCGCTCACAGCGCCGCCGCCGCCG
CGGGCGGCCTTGCGCAGGGTGTCGCGGGTGCTGCCGCCGGCGCCGCCGCC
GGCGCCGCTGCCGGCGCTGCCGATGTCGTGGGCGGCCTCGCGCAGGGCGT
AGCGGGCGCCGCCGCCGGCGCCGTGGGGAACGTCGTGAGCGCGGCGGCGG
GCGTCGCGTGCGGCATCGGCGCGTTCGCCAACGGCATCGGCAGCTTCTTC
TTCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAAGAGTGAGAAGGC
GCAGCAGAGCAGGGGCCGCGCCGACACGGGCTCGCTGCCGCCGAACGGGG
GCGCGGAGGGGGGGGGGCGCCGCCACCGCTCCCCCTCTCCCAGCGCGTGA
GACAAACAGAGGGGGG

protein sequence of jgi.p|Trimin1|338063

>Trimin1|338063|MIX46826_4_16 ID=Trimin1|338063|MIX46826_4_16|Name=jgi.p|Trimin1|338063|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=450bp
MIEIVVNVINELTRWRGLPLERLQECATTAARHVLDHLRELLVRAEDQLR
MAYAALQAFREEQRRNDERRRRSRAMPPVASARARAAAAAPFAALPGAAT
AAPPPPPRPLRAGAARAAAVAALRQLARDAAALPRNGAKAAAALFRELPG
GGAAAAAPAWRWSHAGRARCYWAYSRPHLGVRDSAPWQEKEAAAAVYYRT
HTRQEVRAAKAAAERPCEPAAALAAIEPAFASPFVGSAQEVWPSDNYPWG
RQAWADIDDILRQKDEAAQKPGYSKAKVFFYPKSYGHIEPPKQDPLGAAL
SAVAGIVVHTAQHAGEHGAASAAGAAAHSAAAAAGGLAQGVAGAAAGAAA
GAAAGAADVVGGLAQGVAGAAAGAVGNVVSAAAGVACGIGAFANGIGSFF
FGGGGGGGGGGGKSEKAQQSRGRADTGSLPPNGGAEGGGRRHRSPSPSA*

mRNA from alignment at Contig_9:1571722..1575533-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3653 ID=mRNA_3653|Name=jgi.p|Trimin1|338063|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3812bp|location=Sequence derived from alignment at Contig_9:1571722..1575533- (Tribonema minus UTEX_B_3156 )
ATGATCGAAATCGTCGTCAACGTTATCAACGAGCTGACCCGCTGGCGGGG
GCTGCCGTTGGAGCGCCTTCAGGAATGTGCGACCACCGCTGCTCGCCATG
TCCTTGACCACCTTCGGGAGCTCCTGGTCCGGGCTGAGGACCAGCTGCGC
AGTAAGTCGCTGCCTCACCATCGCCCTTCGCTGAGTTCGTGTTGGCAGCA
TGACGCATGACCGTGTTCGTTACGATTTGCCTGCCATGTAGGCTTTCTGA
GAATTTAAATTAGCAGCAACATGCCTTCTGGCGCCTGATCAGCTTTGGGG
TCACAACGCATGCGGAAATGGGCTCAGGAGGCTGCGCCCTTGCATGGCCT
TGCTGGCCCTGCACAGCTGCAAAGAAGTTGACCCCGCTCTGTGCCGAATA
CCTCCAAGCTGTTGCAACCGTTTACCAACCCGGCGCACTCGTCCAGCACA
CTCAAAGCGGCATCTTCGCCCCCCCCCCCCCCCCCCTCTCCCCTCCCCCT
CCCCCTCCCCTCAGTGGCGTACGCCGCGCTCCAGGCCTTCCGCGAGGAGC
AGCGCCGCAACGACGAGCGCCGCCGCCGCAGCCGCGCAATGCCGCCCGTC
GCCTCCGCCCGCGCGCGCGCCGCCGCCGCCGCGCCCTTCGCCGCGCTCCC
CGGCGCCGCCACCGCCGCGCCGCCGCCGCCGCCACGGCCGCTGCGCGCGG
GCGCCGCGCGCGCCGCCGCCGTGGCGGCGCTGCGGCAGCTGGCGCGCGAC
GCTGCCGCGCTGCCGCGGAACGGCGCAAAGGCGGCGGCGGCGCTGTTTCG
GGAGCTGCCCGGCGGCGGCGCGGCGGCCGCGGCGCCGGCGTGGCGCTGGT
CGCACGCGGGGCGCGCGCGCTGCTACTGGGCGTACTCCCGGCCGCACCTC
GGCGTGCGCGACTCTGCGCCTTGGCAAGTGAGCGCTCGTTGGCAATGCGT
GAACAGGGGCAGGGTAGGTAGGTAGGTGATGTAAACGGGCGTGCTGGTGG
ACAGCGGAGCAGTACATAGGCACGCCAACACTTATTGTTCGGTGGTGGTA
GAGGGCCGCACCAACAGTGGTTACTGTGTTGACCGGAGACTGAATCAGTC
TGACTGACTGGTGTATTTACACTTGGGGCTGGAGCGGTGACTCTCCTCGC
AGGTCTTCAATTGACTAGCGCACATCTAGGGCTTGGTCCCCTGACCACAG
GTCTTGGGCTATTCAGCTGGCAAGTCACGGTGACGGCCCGGAATCTCAAA
CGCCACTTGCGTGCGTGCTCGCGGTGCGTACCTGTCACCCGCGCTTGTGC
GTGGAGGGGCGATGTGCTGCAGTCAAGGTCGTGACCTGAAGTACTGCGCA
CTCTGCTACCAAGGCCTATGCAAGGGTTTGACTCAGCGTCAGAGGCGAGG
TCAAGACCAGGGCAAGGCGTCATATTTTCGGCACTGGTGCTGCGTTCAGA
CGTCACTGACACAGAGAAACGTGCACGCGTTCGACGCTGCTGCTGACATG
TCTTCCCGCCGCCGCCGCCGCTGCCCGCCACCCTTCTACGCACGCAGGAG
AAGGAGGCGGCGGCAGCGGTGTACTACCGCACGCACACGCGCCAGGAGGT
CAGGGCCGCCAAGGCTGCTGCCGAGAGGCCTTGCGAGCCGGCGGCGGCGC
TGGCTGCAATTGAACCCGCTTTCGCATCCCCGTTTGTGGGCAGCGCTCAG
GAGGTGAGCGTTGTTGACGAGGTCGCAGTGCGCGGTGCAAGCGCGAGCTG
TTGCGCTTCGAGAGGAATGCTAGCTGCAGCTGTGGCCGCTTCGATCATTG
TGTGTTGCGCCGTGAGCGTTGCTGCTGCGGCGCGCACGAGCACATGTGCG
TGTTGCCGTTTGTGATCAGCGCTCCGCAGGCGGGCGGGCGGCGGTTGCGG
CATGCGTCGCGAGTGCGACTTGTCGCGACTACGTCTTTTTGTGCATTCAT
TAGGGTTAGGTTTAGGGTTAGGGTTAGGGTTGGAGAATGCTCACAGCGCT
TGGCGCGCGTCGGTCTCTGTGTGTGTGCCTCGCTGCGGCGGCACAAAACA
CGTCTGTCCCCCGTCAAACGGCCAACTCCACTATCACTAGAATGTGTGAA
GTGTATTCAACTCGCAATCATGCGACCTAGCCGTGGTTTTGCAATGGCGC
AACAGCATCATGCACCGCTCATTGTGAAGGCTGTCTCACAGCAGATGTAC
TGATGGCAGTCCCGCACATCCGAACACAGCACGCGCACTGAGAGCTAGAC
TTGCAATGTCTCCGGACGGTGACCAACGCTGGTACCAGTGCTAGCGCTAG
TGATTGGGGTTGACTTGAGAGTGACACGTTAAAATTGATCGTCGTGAAAC
TGTTCACCCGTATCGCATACTGTGCCTCATATCCACTTTGCTCCCTCCAT
ACGCTGTTCGCGGCGACAGGTCTGGCCGTCAGACAACTACCCATGGGGGA
GGCAGGCCTGGGCCGACATAGACGACATACTGCGCCAGAAGGACGAGGCA
GCACAGAAGCCGGTGAGCTCCCCGCTGCGACGTTTATGAGCAGTGCACTC
CGCTCTGTGGTGTGTAGGGGTATCTGTTGTCATGGTGCGTACGGTATGCG
TGTGTCTTGCGCCGCCGCGAGTGTGCGCGACAACGACGCGCTCGGCTTGT
GTTTGTCGGAAGCACTGCCGCTGCGGCAGCGCGCAGCAAACACGCAGTAC
AGAGGCTGGTGAGCTCTCCGCCGCAGCGTTCGCTGGTGCGCACGGTTGCA
TCCCGCCCCAGTGGTGCGTAGGGCAACTGTTGCCATGGCCATGGCATCTG
CTGTCATGGCACATGTGACATAGGGTATGTAGCATCATGAGTGCATCATG
TGCCGCAATGCGTCGCGGCGGCGGCGCGCTCAAGTTGTGTTTGTCAGAAG
CACCGCCGCGCTGCGGTAGCGCGCAGCGTTTACGCACTGCAGAAGCTGGT
GACTCTTTGCCGTGAGGTTTGTGGACGCACACGCTTCATCCTGCAGCATG
TAGGGTATGCATTCCAGTGGAGTGTAGGGTGTGCATCATGTGCCACTATT
GGGTTGCACCGATGGCGCGCTTGCACACACCCGCCGGTGACGAGACACCA
CACGCACCCTTTCAAAGTGCACAACACTTCAATGATCAGCGCATTTCTGT
GCGCTTGGCCGAGAATCACCAACAAGTAAAGTACGCGCTAGCCTCAGGAT
GCATGCAAACTTCAAGTCCCTGACCGCATTTGCCATGCTCCTTTCTCCAA
AACGCGCAGGGCTACTCCAAGGCCAAGGTCTTCTTCTACCCCAAGAGCTA
CGGCCACATCGAGCCCCCCAAGCAGGACCCCCTCGGCGCCGCACTGAGCG
CTGTCGCCGGCATTGTCGTCCACACCGCTCAGCACGCGGGCGAGCACGGC
GCCGCCTCCGCCGCCGGCGCCGCCGCTCACAGCGCCGCCGCCGCCGCGGG
CGGCCTTGCGCAGGGTGTCGCGGGTGCTGCCGCCGGCGCCGCCGCCGGCG
CCGCTGCCGGCGCTGCCGATGTCGTGGGCGGCCTCGCGCAGGGCGTAGCG
GGCGCCGCCGCCGGCGCCGTGGGGAACGTCGTGAGCGCGGCGGCGGGCGT
CGCGTGCGGCATCGGCGCGTTCGCCAACGGCATCGGCAGCTTCTTCTTCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAAGAGTGAGAAGGCGCAG
CAGAGCAGGGGCCGCGCCGACACGGGCTCGCTGCCGCCGAACGGGGGCGC
GGAGGGGGGGGGGCGCCGCCACCGCTCCCCCTCTCCCAGCGCGTGAGACA
AACAGAGGGGGG

Coding sequence (CDS) from alignment at Contig_9:1571722..1575533-

>mRNA_3653 ID=mRNA_3653|Name=jgi.p|Trimin1|338063|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1350bp|location=Sequence derived from alignment at Contig_9:1571722..1575533- (Tribonema minus UTEX_B_3156 )
ATGATCGAAATCGTCGTCAACGTTATCAACGAGCTGACCCGCTGGCGGGG
GCTGCCGTTGGAGCGCCTTCAGGAATGTGCGACCACCGCTGCTCGCCATG
TCCTTGACCACCTTCGGGAGCTCCTGGTCCGGGCTGAGGACCAGCTGCGC
ATGGCGTACGCCGCGCTCCAGGCCTTCCGCGAGGAGCAGCGCCGCAACGA
CGAGCGCCGCCGCCGCAGCCGCGCAATGCCGCCCGTCGCCTCCGCCCGCG
CGCGCGCCGCCGCCGCCGCGCCCTTCGCCGCGCTCCCCGGCGCCGCCACC
GCCGCGCCGCCGCCGCCGCCACGGCCGCTGCGCGCGGGCGCCGCGCGCGC
CGCCGCCGTGGCGGCGCTGCGGCAGCTGGCGCGCGACGCTGCCGCGCTGC
CGCGGAACGGCGCAAAGGCGGCGGCGGCGCTGTTTCGGGAGCTGCCCGGC
GGCGGCGCGGCGGCCGCGGCGCCGGCGTGGCGCTGGTCGCACGCGGGGCG
CGCGCGCTGCTACTGGGCGTACTCCCGGCCGCACCTCGGCGTGCGCGACT
CTGCGCCTTGGCAAGAGAAGGAGGCGGCGGCAGCGGTGTACTACCGCACG
CACACGCGCCAGGAGGTCAGGGCCGCCAAGGCTGCTGCCGAGAGGCCTTG
CGAGCCGGCGGCGGCGCTGGCTGCAATTGAACCCGCTTTCGCATCCCCGT
TTGTGGGCAGCGCTCAGGAGGTCTGGCCGTCAGACAACTACCCATGGGGG
AGGCAGGCCTGGGCCGACATAGACGACATACTGCGCCAGAAGGACGAGGC
AGCACAGAAGCCGGGCTACTCCAAGGCCAAGGTCTTCTTCTACCCCAAGA
GCTACGGCCACATCGAGCCCCCCAAGCAGGACCCCCTCGGCGCCGCACTG
AGCGCTGTCGCCGGCATTGTCGTCCACACCGCTCAGCACGCGGGCGAGCA
CGGCGCCGCCTCCGCCGCCGGCGCCGCCGCTCACAGCGCCGCCGCCGCCG
CGGGCGGCCTTGCGCAGGGTGTCGCGGGTGCTGCCGCCGGCGCCGCCGCC
GGCGCCGCTGCCGGCGCTGCCGATGTCGTGGGCGGCCTCGCGCAGGGCGT
AGCGGGCGCCGCCGCCGGCGCCGTGGGGAACGTCGTGAGCGCGGCGGCGG
GCGTCGCGTGCGGCATCGGCGCGTTCGCCAACGGCATCGGCAGCTTCTTC
TTCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAAGAGTGAGAAGGC
GCAGCAGAGCAGGGGCCGCGCCGACACGGGCTCGCTGCCGCCGAACGGGG
GCGCGGAGGGGGGGGGGCGCCGCCACCGCTCCCCCTCTCCCAGCGCGTGA