mRNA_3651 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|338062
Unique Name	mRNA_3651
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|338062 vs. uniprot
Match: A0A835YJG2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJG2_9STRA)

HSP 1 Score: 810 bits (2093), Expect = 1.530e-295
Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 1

Query:    1 MAGQPRPTGPHFDHAGPPDALIYETDARLHGLQYSFPHFSEVMLQDDSVWAHPNMARYRRQAAEEVTGDLAEIAGPYSRYCAKCYLSTTPPFIALMDLRRMLTDADRAARRRWAQPSIWHAMHAASFAWDYDGEGASWIVAALAHLDTTLFRVAFLGLDLATPVPRARRVWEAPPRSWSPRAPCALAAAGGAFSPAERAAFQPFAQWLRAHAATLGAPVVDLFFRARREVVWHFVVLPAQRAAPPDSFWRSRALLTRVYSFLSSXXXXXXXXXXXXXXXXXXXXXHMEMFGTPLRQRQQQRQLTQLQSILMLTAVRQCCAARVQHSGGGARRAAGAPVHFATVVAIADTRSLLLGAQRGGAHTHAAQLLRAAQSVLQDPAHMSAQQRWRQRRCVDMRLPAAAHARAQGQLDGASNASAVLRRALFLTVDRGAGR 1302
            MAGQPRPTGPHFDHAGPPDALIYETDARLHGLQYSFPHFSEVMLQDDSVWAHPNMARYRRQAAEEVTGDLAEIAGPYSRYCAKCYLSTTPPFIALMDLRRMLTDADRAARRRWAQPSIWHAMHAASFAWDYDGEGASWIVAALAHLDTTLFRVAFLGLDLATPVPRARRVWEAPPRSWSPRAPCALAAAGGAFSPAERAAFQPFAQWLRAHAATLGAPVVDLFFRARREVVWHFVVLPAQRAAPPDSFWRSRALLTRVYSFLSSXXXXXXXXXXXXXXXXXXXXXHMEMFGTPLRQRQQQRQLTQLQSILMLTAVRQCCAARVQHSGGGARRAAGAPVHFATVVAIADTRSLLLGAQRGGAHTHAAQLLRAAQSVLQDPAHMSAQQRWRQRRCVDMRLPAAAHARAQGQLDGASNASAVLRRALFLTVDRGAGR
Sbjct:    1 MAGQPRPTGPHFDHAGPPDALIYETDARLHGLQYSFPHFSEVMLQDDSVWAHPNMARYRRQAAEEVTGDLAEIAGPYSRYCAKCYLSTTPPFIALMDLRRMLTDADRAARRRWAQPSIWHAMHAASFAWDYDGEGASWIVAALAHLDTTLFRVAFLGLDLATPVPRARRVWEAPPRSWSPRAPCALAAAGGAFSPAERAAFQPFAQWLRAHAATLGAPVVDLFFRARREVVWHFVVLPAQRAAPPDSFWRSRALLTRVYSFLSSXXXXXXXXXXXXXXXXXXXXXHMEMFGTPLRQRQQQRQLTQLQSILMLTAVRQCCAARVQHSGGGARRAAGAPVHFATVVAIADTRSLLLGAQRGGAHTHAAQLLRAAQSVLQDPAHMSAQQRWRQRRCVDMRLPAAAHARAQGQLDGASNASAVLRRALFLTVDRGAGR 434

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|338062 vs. uniprot

BLAST of jgi.p|Trimin1|338062 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YJG2_9STRA	1.530e-295	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_9	contig	Contig_9:1553890..1555738 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|338062\|MIX46825_2_11
Hectar predicted targeting category	other localisation
TranscriptId	338384
Track	FilteredModels1
ProteinId	338062

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|338062	gene_3651	Tribonema minus UTEX_B_3156	gene	Contig_9 1553890..1555738 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|338062	Trimin1\|338062\|MIX46825_2_11	Tribonema minus UTEX_B_3156	polypeptide	Contig_9 1553890..1555738 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3651_4	exon_3651_4	Tribonema minus UTEX_B_3156	exon	Contig_9 1553890..1553957 -
exon_3651_3	exon_3651_3	Tribonema minus UTEX_B_3156	exon	Contig_9 1554093..1554400 -
exon_3651_2	exon_3651_2	Tribonema minus UTEX_B_3156	exon	Contig_9 1554706..1554849 -
exon_3651_1	exon_3651_1	Tribonema minus UTEX_B_3156	exon	Contig_9 1554954..1555738 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3651	CDS_3651	Tribonema minus UTEX_B_3156	CDS	Contig_9 1554954..1555738 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_9:1553890..1555738-
coding sequence from alignment at Contig_9:1553890..1555738-

spliced messenger RNA

>mRNA_3651 ID=mRNA_3651|Name=jgi.p|Trimin1|338062|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1305bp|location=Sequence derived from alignment at Contig_9:1553890..1555738- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGGACAGCCACGCCCAACAGGGCCGCATTTCGATCACGCTGGACC
CCCTGACGCCCTCATCTACGAGACAGATGCCCGGCTCCACGGCCTCCAGT
ACAGCTTCCCCCACTTCTCTGAGGTTATGCTGCAGGACGACAGCGTGTGG
GCACACCCCAACATGGCCCGCTACCGACGGCAAGCCGCGGAAGAGGTCAC
CGGCGACCTGGCCGAGATTGCGGGGCCCTATTCGCGCTACTGCGCCAAGT
GCTACCTCAGCACCACGCCGCCGTTCATCGCGCTGATGGACCTGCGCCGC
ATGCTCACCGACGCCGACCGCGCCGCGCGCCGCCGGTGGGCGCAGCCGAG
CATCTGGCATGCGATGCACGCGGCGTCGTTCGCGTGGGACTATGACGGCG
AGGGCGCCAGCTGGATTGTGGCAGCGCTCGCGCACCTCGACACGACGCTC
TTCCGCGTCGCGTTTCTGGGGCTCGACCTCGCAACGCCCGTGCCGCGCGC
GCGCCGCGTCTGGGAGGCGCCCCCGCGGAGCTGGTCGCCGCGCGCGCCGT
GCGCGCTCGCGGCCGCCGGCGGCGCGTTCTCGCCCGCGGAGCGCGCGGCG
TTCCAGCCGTTCGCGCAGTGGCTGCGCGCGCACGCGGCGACGCTGGGGGC
GCCGGTGGTGGACCTCTTCTTCCGCGCGCGCCGCGAGGTCGTGTGGCACT
TTGTCGTCCTGCCGGCGCAGCGCGCGGCGCCGCCGGACTCGTTCTGGCGC
AGCCGCGCGCTGCTCACGCGCGTGTACTCCTTCCTCAGCAGCAGCAGCAG
CGCGGGCGCGGGCGCAGCGCGCCGCTGCTTGCTGCTGGTGGCCGCCGCAG
CTGCGCATATGGAGATGTTTGGCACACCGCTGCGGCAGCGGCAGCAGCAG
CGGCAGCTGACGCAGCTGCAGAGCATCCTCATGTTGACGGCGGTGCGGCA
GTGTTGCGCGGCGCGCGTGCAGCACAGCGGTGGCGGCGCGCGGCGAGCGG
CGGGCGCGCCTGTGCACTTTGCCACAGTTGTGGCTATTGCTGACACGCGG
TCGCTGCTGCTCGGGGCGCAACGGGGCGGTGCACACACGCACGCGGCGCA
GCTGCTTCGAGCGGCACAGTCGGTGCTGCAAGACCCGGCGCATATGAGCG
CGCAGCAGCGGTGGCGGCAGCGGCGGTGCGTGGACATGCGATTGCCCGCG
GCAGCGCACGCGCGCGCACAGGGGCAGCTAGACGGCGCATCAAACGCGTC
TGCCGTGCTGCGGCGCGCGCTGTTTCTGACTGTAGATCGTGGTGCGGGGA
GGTAG

protein sequence of jgi.p|Trimin1|338062

>Trimin1|338062|MIX46825_2_11 ID=Trimin1|338062|MIX46825_2_11|Name=jgi.p|Trimin1|338062|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=435bp
MAGQPRPTGPHFDHAGPPDALIYETDARLHGLQYSFPHFSEVMLQDDSVW
AHPNMARYRRQAAEEVTGDLAEIAGPYSRYCAKCYLSTTPPFIALMDLRR
MLTDADRAARRRWAQPSIWHAMHAASFAWDYDGEGASWIVAALAHLDTTL
FRVAFLGLDLATPVPRARRVWEAPPRSWSPRAPCALAAAGGAFSPAERAA
FQPFAQWLRAHAATLGAPVVDLFFRARREVVWHFVVLPAQRAAPPDSFWR
SRALLTRVYSFLSSSSSAGAGAARRCLLLVAAAAAHMEMFGTPLRQRQQQ
RQLTQLQSILMLTAVRQCCAARVQHSGGGARRAAGAPVHFATVVAIADTR
SLLLGAQRGGAHTHAAQLLRAAQSVLQDPAHMSAQQRWRQRRCVDMRLPA
AAHARAQGQLDGASNASAVLRRALFLTVDRGAGR*

mRNA from alignment at Contig_9:1553890..1555738-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3651 ID=mRNA_3651|Name=jgi.p|Trimin1|338062|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1849bp|location=Sequence derived from alignment at Contig_9:1553890..1555738- (Tribonema minus UTEX_B_3156 )
ATGGCTGGACAGCCACGCCCAACAGGGCCGCATTTCGATCACGCTGGACC
CCCTGACGCCCTCATCTACGAGACAGATGCCCGGCTCCACGGCCTCCAGT
ACAGCTTCCCCCACTTCTCTGAGGTTATGCTGCAGGACGACAGCGTGTGG
GCACACCCCAACATGGCCCGCTACCGACGGCAAGCCGCGGAAGAGGTCAC
CGGCGACCTGGCCGAGATTGCGGGGCCCTATTCGCGCTACTGCGCCAAGT
GCTACCTCAGCACCACGCCGCCGTTCATCGCGCTGATGGACCTGCGCCGC
ATGCTCACCGACGCCGACCGCGCCGCGCGCCGCCGGTGGGCGCAGCCGAG
CATCTGGCATGCGATGCACGCGGCGTCGTTCGCGTGGGACTATGACGGCG
AGGGCGCCAGCTGGATTGTGGCAGCGCTCGCGCACCTCGACACGACGCTC
TTCCGCGTCGCGTTTCTGGGGCTCGACCTCGCAACGCCCGTGCCGCGCGC
GCGCCGCGTCTGGGAGGCGCCCCCGCGGAGCTGGTCGCCGCGCGCGCCGT
GCGCGCTCGCGGCCGCCGGCGGCGCGTTCTCGCCCGCGGAGCGCGCGGCG
TTCCAGCCGTTCGCGCAGTGGCTGCGCGCGCACGCGGCGACGCTGGGGGC
GCCGGTGGTGGACCTCTTCTTCCGCGCGCGCCGCGAGGTCGTGTGGCACT
TTGTCGTCCTGCCGGCGCAGCGCGCGGCGCCGCCGGACTCGTTCTGGCGC
AGCCGCGCGCTGCTCACGCGCGTGTACTCCTTCCTGTGAGGCGCGCGGCG
CCGCGCCTGCGGCGGTGTGTGGGCGCGTGAGCGCTGGCTGGCGTTGGAGG
TGCAGGGGGAGGCTGTCGCGCGGCAGCACTGCAGCGCAGCAGCAGCAGCA
GCAGCGCGGGCGCGGGCGCAGCGCGCCGCTGCTTGCTGCTGGTGGCCGCC
GCAGCTGCGCATATGGAGATGTTTGGCACACCGCTGCGGCAGCGGCAGCA
GCAGCGGCAGCTGACGCAGCTGCAGAGCATCCTGTGCGCTGCCTGCTGCT
GCGATGGCGGTGGCAGGACTTGCGGCAATACCTGCAGCTCTGGACGCGGC
TGTGACATTTGGCAGCACCCGTCGTGCAGCGCACGTGCAGGGGGGGGGAT
GCAAATACGTCTTTGCGGATGGCGGCTTTCTGTGAGCACTGAGGAATACG
CCACGTCCACGCCGTGCGGCTGTGGGCGGGAATAGAATCTCGTGGAGGGG
GGGGGGGGCGACAGCAAACTCGTTAGCTTGAACGGTGTCATGGCCAGTCG
CGTAGGCAACAGCGCGCACCTGCATTGTGCCGCCGTAGCATGTTGACGGC
GGTGCGGCAGTGTTGCGCGGCGCGCGTGCAGCACAGCGGTGGCGGCGCGC
GGCGAGCGGCGGGCGCGCCTGTGCACTTTGCCACAGTTGTGGCTATTGCT
GACACGCGGTCGCTGCTGCTCGGGGCGCAACGGGGCGGTGCACACACGCA
CGCGGCGCAGCTGCTTCGAGCGGCACAGTCGGTGCTGCAAGACCCGGCGC
ATATGAGCGCGCAGCAGCGGTGGCGGCAGCGGCGGTGCGTGGACATGCGA
TTGCCCGCGGCAGCGCACGCGCGCGCACAGGGGCAGCTAGACGGCGGTGA
GCGCTGCTGCGAAGACGCTTTGCGACGGCGTCCGCGCTGCATCTGTGTTT
TGCTGACGGCCATTTGAAGTTTAGTGGGTCAAAGTGCGCTGCGTTGGTGG
TGCGTGGGTGGGTCACTGTTCATTGCCGCAGCATCAAACGCGTCTGCCGT
GCTGCGGCGCGCGCTGTTTCTGACTGTAGATCGTGGTGCGGGGAGGTAG

Coding sequence (CDS) from alignment at Contig_9:1553890..1555738-

>mRNA_3651 ID=mRNA_3651|Name=jgi.p|Trimin1|338062|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1305bp|location=Sequence derived from alignment at Contig_9:1553890..1555738- (Tribonema minus UTEX_B_3156 )
ATGGCTGGACAGCCACGCCCAACAGGGCCGCATTTCGATCACGCTGGACC
CCCTGACGCCCTCATCTACGAGACAGATGCCCGGCTCCACGGCCTCCAGT
ACAGCTTCCCCCACTTCTCTGAGGTTATGCTGCAGGACGACAGCGTGTGG
GCACACCCCAACATGGCCCGCTACCGACGGCAAGCCGCGGAAGAGGTCAC
CGGCGACCTGGCCGAGATTGCGGGGCCCTATTCGCGCTACTGCGCCAAGT
GCTACCTCAGCACCACGCCGCCGTTCATCGCGCTGATGGACCTGCGCCGC
ATGCTCACCGACGCCGACCGCGCCGCGCGCCGCCGGTGGGCGCAGCCGAG
CATCTGGCATGCGATGCACGCGGCGTCGTTCGCGTGGGACTATGACGGCG
AGGGCGCCAGCTGGATTGTGGCAGCGCTCGCGCACCTCGACACGACGCTC
TTCCGCGTCGCGTTTCTGGGGCTCGACCTCGCAACGCCCGTGCCGCGCGC
GCGCCGCGTCTGGGAGGCGCCCCCGCGGAGCTGGTCGCCGCGCGCGCCGT
GCGCGCTCGCGGCCGCCGGCGGCGCGTTCTCGCCCGCGGAGCGCGCGGCG
TTCCAGCCGTTCGCGCAGTGGCTGCGCGCGCACGCGGCGACGCTGGGGGC
GCCGGTGGTGGACCTCTTCTTCCGCGCGCGCCGCGAGGTCGTGTGGCACT
TTGTCGTCCTGCCGGCGCAGCGCGCGGCGCCGCCGGACTCGTTCTGGCGC
AGCCGCGCGCTGCTCACGCGCGTGTACTCCTTCCTCAGCAGCAGCAGCAG
CGCGGGCGCGGGCGCAGCGCGCCGCTGCTTGCTGCTGGTGGCCGCCGCAG
CTGCGCATATGGAGATGTTTGGCACACCGCTGCGGCAGCGGCAGCAGCAG
CGGCAGCTGACGCAGCTGCAGAGCATCCTCATGTTGACGGCGGTGCGGCA
GTGTTGCGCGGCGCGCGTGCAGCACAGCGGTGGCGGCGCGCGGCGAGCGG
CGGGCGCGCCTGTGCACTTTGCCACAGTTGTGGCTATTGCTGACACGCGG
TCGCTGCTGCTCGGGGCGCAACGGGGCGGTGCACACACGCACGCGGCGCA
GCTGCTTCGAGCGGCACAGTCGGTGCTGCAAGACCCGGCGCATATGAGCG
CGCAGCAGCGGTGGCGGCAGCGGCGGTGCGTGGACATGCGATTGCCCGCG
GCAGCGCACGCGCGCGCACAGGGGCAGCTAGACGGCGCATCAAACGCGTC
TGCCGTGCTGCGGCGCGCGCTGTTTCTGACTGTAGATCGTGGTGCGGGGA
GGTAG