mRNA_3591 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|337874
Unique NamemRNA_3591
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Match: A0A836C8E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E5_9STRA)

HSP 1 Score: 993 bits (2566), Expect = 0.000e+0
Identity = 510/510 (100.00%), Postives = 510/510 (100.00%), Query Frame = 1
Query:    1 MQSQAYFCGDSITSGQTVGMCSMAGDGHFLRSSTDVFTLARFRDVQVPANSSEPIKAPSTDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCSDPDCNVIADLMYITPASDPNANATLAYGYSRLQETLLGMPVKHITERDALIATLLGLHSGHNWDLNTIRIGNYLATAVDSEQPRCVTILMFVHPWMDAQGWDKLNDNXXXXXXXXXXXXXXXXNAANGFHVYEYGRTLHSGTDGGRERMLEGGDWWNGIDNVANPVFKRFRGYLDTGNPIFKLGIGEVIDWRDCDRWGELGWGPVDTDTSASVPAQGMSEALRISWVNVSYQHPTTQRMDRDYWKTTQTELSSSDFSPTVTGAIVSLAMTAAALIATCVGVGDIVDFFQRVFLLNKYTGPVAEVDSKALAKLLTATVFAFSIITPAALEMIDDISVQNENPNGHGSVVRWVEGQAQGFGAYKITAAVSLQYTCSYSSVASAIIYINVALAVGTLGICIFKIAPYEGPKGN 1530
            MQSQAYFCGDSITSGQTVGMCSMAGDGHFLRSSTDVFTLARFRDVQVPANSSEPIKAPSTDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCSDPDCNVIADLMYITPASDPNANATLAYGYSRLQETLLGMPVKHITERDALIATLLGLHSGHNWDLNTIRIGNYLATAVDSEQPRCVTILMFVHPWMDAQGWDKLNDNXXXXXXXXXXXXXXXXNAANGFHVYEYGRTLHSGTDGGRERMLEGGDWWNGIDNVANPVFKRFRGYLDTGNPIFKLGIGEVIDWRDCDRWGELGWGPVDTDTSASVPAQGMSEALRISWVNVSYQHPTTQRMDRDYWKTTQTELSSSDFSPTVTGAIVSLAMTAAALIATCVGVGDIVDFFQRVFLLNKYTGPVAEVDSKALAKLLTATVFAFSIITPAALEMIDDISVQNENPNGHGSVVRWVEGQAQGFGAYKITAAVSLQYTCSYSSVASAIIYINVALAVGTLGICIFKIAPYEGPKGN
Sbjct:    1 MQSQAYFCGDSITSGQTVGMCSMAGDGHFLRSSTDVFTLARFRDVQVPANSSEPIKAPSTDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCSDPDCNVIADLMYITPASDPNANATLAYGYSRLQETLLGMPVKHITERDALIATLLGLHSGHNWDLNTIRIGNYLATAVDSEQPRCVTILMFVHPWMDAQGWDKLNDNXXXXXXXXXXXXXXXXNAANGFHVYEYGRTLHSGTDGGRERMLEGGDWWNGIDNVANPVFKRFRGYLDTGNPIFKLGIGEVIDWRDCDRWGELGWGPVDTDTSASVPAQGMSEALRISWVNVSYQHPTTQRMDRDYWKTTQTELSSSDFSPTVTGAIVSLAMTAAALIATCVGVGDIVDFFQRVFLLNKYTGPVAEVDSKALAKLLTATVFAFSIITPAALEMIDDISVQNENPNGHGSVVRWVEGQAQGFGAYKITAAVSLQYTCSYSSVASAIIYINVALAVGTLGICIFKIAPYEGPKGN 510          
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Match: A0A836CMJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ6_9STRA)

HSP 1 Score: 256 bits (653), Expect = 6.800e-73
Identity = 198/650 (30.46%), Postives = 278/650 (42.77%), Query Frame = 1
Query:   13 AYFCGDSITSGQTVGMCSMAGDGHFLRSSTDVFTLARFRDVQVP----ANSSEPIKAP-STDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCSDPDCNVIADLMYITPASDPNANATLAYGYSRLQETLLGMPVKHITERDALIATLLGLHSGHNWDLNTIRIGNYLATAVDSEQPRCVTILMFVHPWMDAQGWDKLN-----------DNXXXXXXXXXXXXXXXXNAAN-------GFHVYEYGRTLHSGTDGGRERM--------------------------------------LEGGDWWNGI---------DNVANPVFKRFRGYLDTGNPIFKLGI--------------------------------GEVIDWRDCDRWGELGWGPVDTDTSASVPAQGMSEALRISWVNVSYQHPTTQRMDRDYWKTTQ------------------------------------TELSSSDFSPTVTGAIVSLAMTAAALIATCVGVGDIVDFF-------QRVFLLNKYTGPVAEVDSKA-----------LAKLLTATVFAFSIITPAALEMIDDISVQNENPNGHGSVVRWVEGQAQGFGAYKITAAVSLQYTCSYSSVASAIIYINVALA-VGTLGIC 1491
            +Y C D+   GQ+  +C+M G+G+   S  D+ +  RF D+        N+   + A  STD+ +RG LADY L   ++TSRL   K++TG AQVDL+LC D DC+ +ADL+ +  A DP AN+TLA+GYSR+     G  V+           L G     NWDL+ + IGNYL         +CVTI+ F H +M   GW+K +           +                 N  +       G  ++EYGRTL+  +     +                                       L  GDWWNG          D  +NPV +  R      NP+ KL                                  G+ +DWR CD WG L WG VDT       AQ +SEAL +SW NVSY H  T R     WK+T                                       L++SDF+ T+ GA+ ++A++   L+A   G  DI+  F        RV+   +        DSKA           L+KLLT   F F+IITPA L ++D+ SV+++N +G  S V WVE +AQG G YK+ AAVSL  T + +  A  ++  N+ LA +G +  C
Sbjct:   44 SYLCTDAT--GQSAHVCAMVGEGYLYGSGADLISSVRFTDLSATQAMNVNADGMVSAAISTDENLRGFLADYILTAQRSTSRLGNAKRITGNAQVDLYLCGDDDCSTMADLLNVVSADDPGANSTLAFGYSRIA----GAAVR-----------LFGGAKAANWDLSNLLIGNYLTAG-----GQCVTIITFKHRFMADMGWEKASSCENILKKNKTEGNGWYDRVQDFADLIQENGGDRGATLDAGPDLFEYGRTLYCDSKHYENKQTMPAGESTCYAASHRASIAAWEVSEPALEEDPTALHLRLSHGDWWNGYAYLGPDAAKDTGSNPVQRGLRRI----NPLLKLSELSHRADRDDLPWCSTAKEKFDEQHKFGFVQVDGKFVDWRTCDNWGALNWGTVDTPVDDVRAAQPLSEALHVSWANVSYVHTRTYRGPEQVWKSTNDGIGFTSYEYPIPGTLVAGVETVLLDAETVLGRATDAALANSDFTTTIPGALFAMALSVTGLVAAYAGRKDIIYCFYHVGVRAHRVWRWLRLPWRTQYPDSKAREDHRNRMGLLLSKLLTMVTFVFAIITPALLAVVDEFSVRDQNSDGSVSTVVWVEAEAQGQGEYKVVAAVSLFMTSARNDAAFGLLCCNLVLAALGCVATC 667          
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Match: A0A835YZN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN9_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.140e-40
Identity = 99/240 (41.25%), Postives = 131/240 (54.58%), Query Frame = 1
Query:   10 QAYFCGDSITSGQTVGMCSMAGDGHFLRSSTDVFTLARFRDVQVPANSSEPIKAPSTDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCSDPDCNVIADLMYI-TPASDPNANATLAYGYSRLQETLLGMPVKHITERDAL----------IATL-------------------------------LGLHSGHNWDLNTIRIGNYLATAVDSEQPRCVTILMFVHPWMDAQGW 603
            QA  C D+IT+GQ VGMC+MAGD  +L+S+ D+    RF +   P        A ST+ ++RG LADY L   Q T R N  K+L G AQ+DLFLCSDP C+V+ADL++I TP  D +++ TLA+GY+R+  TL+G+P KHI   DAL          IA L                               +G+    NW+   +RIGNY     ++    CVTI+ FVHPWMD QGW
Sbjct: 1527 QALLCQDAITTGQAVGMCAMAGDKLYLKSAADLLAAVRFVESAPPQIGDT---ATSTEPHMRGFLADYTLSQEQDTKRFNSSKRLKGSAQLDLFLCSDPSCDVVADLVHIDTP--DQDSSYTLAFGYTRIPGTLMGLPGKHIKATDALTSRSIADSGKIAGLADGATVIWTMDDPQWVDATPVMLSYGAAVRFIGMADAKNWNFERLRIGNY-----ETRAGECVTIITFVHPWMDEQGW 1756          
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Match: A0A835ZC60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC60_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.020e-27
Identity = 89/239 (37.24%), Postives = 113/239 (47.28%), Query Frame = 1
Query:   19 FCGDSITSGQTVGMCSMAGDGHFLRSSTDVFTLARFRDVQVPANSSEPIKAPSTDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCSDPDCNVIADLMYITPASD-PNANATLAYGYSRLQETLLGMPVKHITER--------DALIA---------------------------TLLGLHS--------GHNWDLNTIRIGNYLATAVDSEQPRCVTILMFVHPWMDAQGW 603
            FC D I SGQTV  CS+   G+   S+ D+   +RF+        S   +A STD    GLLADY + +  T+ RL+  K +T  AQ+DLFLC D  C  +ADLMYIT A D P+  ATLA+GYSRL  TL  +P +++           DA  A                           TLL   S        G NWD+  +R G Y        +  CVT+L  VHPW DA GW
Sbjct:   47 FCSDGIQSGQTVHACSLVDAGYVTGSAADLLMASRFKGF------SAGKQAWSTDPNTVGLLADYTMSVHATSQRLDASKDITATAQLDLFLCGDDTCKAMADLMYITAAGDAPSTPATLAFGYSRLANTLAALPTRYLDPATITSTLVPDAAAASPVSVPGAQLSTVAWQIEDPEWVANYPTLLNTASLARALAIGGANWDV--VRAGRYR-----DARGVCVTVLSPVHPWFDAMGW 272          
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Match: A0A835ZIR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIR8_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.140e-27
Identity = 150/544 (27.57%), Postives = 221/544 (40.62%), Query Frame = 1
Query:   58 MCSMAGDGHFLRSSTDVFTLARFRDVQVPANSSEPIKAPSTDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCSDPDCNVIADLMYITPASDPNANATLAYGYSRLQETLLGMPVKHI---TERDALIATLLGLHSGH---------------------------------NWDLNTIRIGNYLATAVDSEQPRCVTILMFVHPWMDAQGWDKLNDNXXXXXXXXXXXXXXXXNAANGFHVYEYGRTLHSGTDGGRERMLEGGDWWNGIDNVANPVFKRFRGYLD------------------TGNPIFKLG-----IGEVIDWRDCDRWGELG--WGP----VDTD----TSASVPAQGMS-EALRISWVNVSYQHPTTQRMDRDYWKTTQTELSSSDFSPTVTGAIVSLAMTAAALIATCVGVGDIVDFFQRVFLLNKYTGPVAEVDSKALAKLLTATVFAFSIITPAALEMIDDISVQNENPNGHGSVVR--WVEGQAQGFGAYKITAAVSLQYTCSYSSVASAIIYINVALAV 1473
            MC++  +G    S+ D++  +RF D     N +    A STD    G+ AD  +     T+RL+  K+L+G AQVDLFLC D  CN +ADL Y+  ASDP   ATLA+GY RL   LLG+  +++     R  L+    G   G                                  N D   +R GNY    +DS    CVT+L   HPW D +GW    D                  +A     +   R L       R R    G   +    +A+    R + YLD                  T +    L      + + +   D   +G  G  WG     + TD    TS    A G S  +   S  + S     T         + Q +L+++DFS TV GA+++ ++T  +LIA  +G  ++V FF +  L     G  A       AK +   V  F+++T  A  +I +   +  NP+G        W  G A G G YK+   +++ Y   YS  A A+ +IN+A+AV
Sbjct:    1 MCTLV-EGFPEGSAADMWMASRFTDFT--GNGT----AWSTDPNFAGVAADLVMDFAAETARLDARKRLSGTAQVDLFLCGDEPCNTVADLAYVLSASDPEGQATLAFGYQRLPHGLLGVATRYLDPAATRTVLLPATDGDSKGPRSVGRVVEFPEWVDNVPSLLAFGPLARTLVVEGNLDWGRVRAGNY----IDSRGV-CVTVLTPAHPWFDERGWGTAEDCESSQTYIFFTFFAPVRASARN---HPECRQLPP-----RVRRCRSGPPPHVTAALASLPL-RLQAYLDMDHFETADDAGLVLSSTITSSSSLTLWQRYAVLYDAVPLEDVSPYGWRGATWGDQARFMVTDLYCTTSNLFNAVGASANSTGCSPSHHSGIDAITLTAQTALQSSVQGQLATADFSLTVAGALIAFSLTTVSLIAGYLGRRELVRFFAKCRL-----GVTA-------AKAMAVAVTMFALVTYPATIIIAEEGARASNPDGGAGSAGTFWFAGDASGGGYYKVVGVMTVAYASVYSRTAYALAWINLAVAV 511          
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Match: A0A836CKV3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.210e-27
Identity = 83/239 (34.73%), Postives = 120/239 (50.21%), Query Frame = 1
Query:   22 CGDSITSGQTVGMCSMAGDGHFLRSSTDVFTLARFRDVQVPANSSEPIKAPSTDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCSDPDCNVIADLMYITPASDPNANATLAYGYSRLQETLLGMP--------VKHITERDALIATLLGLHSGH-NWDL---------------------------NT----IRIGNYLATAVDSEQPRCVTILMFVHPWMDAQGWDKLND 618
            CGD+I+SGQ V MC++ G G+ L+S+       RF D            A ST+  V+G++AD+ +Q+++ TS  +  K++ G  QVDLFLC+D  C+V+ DL Y+  A+ P A ATLA GYSR   TL G+         V  +   D+ ++  +G   G   W+L                           NT    +R G Y+    D     CVTI+ FVH WMDAQGW++ N+
Sbjct:  226 CGDAISSGQLVNMCNLVGRGYPLQSAAGTLMAQRFLDYDADGF------AFSTEPNVQGVVADFTIQISRGTSLADVNKRIAGAGQVDLFLCADTACSVVVDLAYVRAAAAPAATATLAMGYSRFLNTLAGVSTGFLETSAVGAVVPHDSALSPEVGSTVGQVTWELAATANMVDASPILMEFGGLARALSAPNNTAWKGLRAGIYITADGD-----CVTIISFVHSWMDAQGWNRSNN 453          
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Match: A0A836CDF0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.730e-27
Identity = 79/236 (33.47%), Postives = 118/236 (50.00%), Query Frame = 1
Query:   22 CGDSITSGQTVGMCSMAGDGHFLRSSTDVFTLARFRDVQVPANSSEPIKAPSTDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCSDPDCNVIADLMYITPASDPNANATLAYGYSRLQETLLGMPVKH--------ITERDALIATLLG--------------------------------LHSGHNWDLNTIRIGNYLATAVDSEQPRCVTILMFVHPWMDAQGWDK 609
            CGD+I+SGQ V MC++ G G+ ++S+  +    RFR  ++         A ST+  V G++AD+ + +++ TS  +  K++ G  QVDLFLCSD  C V+ DL YI  A  P A+ATLA GYSR   +L G+            + +R++ +A  +G                                L +  N   N +R G+Y+ +        CVTI+ FVHPWMD QGWD+
Sbjct:   44 CGDAISSGQLVNMCNLVGRGYPMQSAAGLLMAQRFRGFRIDD------LAYSTEPNVPGVVADFTIDISRGTSLADVSKQIAGTGQVDLFLCSDAACTVVVDLAYIASAMTPAADATLAMGYSRFPYSLSGVSTGFLETSAAGAVVDRNSTLAPEVGSVVRQVTWELADNAAVVDASPVLMELGGLARALSAPINTAWNGLRAGHYITS-----DGNCVTIISFVHPWMDEQGWDR 268          
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Match: A0A836CAV9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 4.630e-27
Identity = 80/243 (32.92%), Postives = 112/243 (46.09%), Query Frame = 1
Query:   13 AYFCGDSITSGQTVGMCSMAGDGHFLRSSTDVFTLARFRDVQVPANSSEPIKAPSTDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCSDPDCNVIADLMYITPASDPNANATLAYGYSRLQETLLGMPVKHI-----TER-------------------------------------DALIATLLGLHSGHNWDLNTIRIGNYLATAVDSEQPRCVTILMFVHPWMDAQGWDKLN 615
            + FC D+I +GQ  G C++  +G+ L +  D+   ARF+             A STD  V G+LADY+L + ++ +RL+  + L G AQVDLFLCSD DCNVIAD++++     PN   TLA GY+R   +L+ +P  HI     T R                                      AL+  L         DL  +R G Y     + +   CV ++ F HPWMDA GW   N
Sbjct:   45 SVFCADAIETGQAAGTCNLVSEGYPLGAGADLLMAARFQSFAAAGG------AASTDHNVGGVLADYELTVARSNARLDAQRSLRGTAQVDLFLCSDGDCNVIADVVHVVTEGKPNG--TLAMGYARFAHSLVALPAYHIRADSVTPRVFPVAESRRGVARSKVAWALADASAEWVSANMVMMPFGALVRFLALSARSAELDLGVLRAGAY----TEQQTGDCVIVISFKHPWMDAMGWGTSN 275          
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Match: A0A836CCW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCW8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.680e-24
Identity = 80/238 (33.61%), Postives = 110/238 (46.22%), Query Frame = 1
Query:   22 CGDSITSGQTVGMCSMAGDGHFLRSSTDVFTLARFRDVQVPANSSEPIKAPSTDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCSDPDCNVIADLMYITPASDPNANATLAYGYSRLQETLLGMPVKHITERDA---------------------------------------LIATLLGLHSGHNWDLNTIRIGNYLATAVDSEQPRCVTILMFVHPWMDAQGWDKLND 618
            C   + +G   GMC++ G G    S+ D+   +RF D     N +  +   STD    G++AD  L  +  TSRL+  K+LTG AQVDLF+C D  CN +ADL Y+ PAS+P+A  TLAYGY RL   LLG+P +++   +                                          A  L +    NW    +R GNY    VDS    CVT+    HPW++A+GW    D
Sbjct:   68 CVIGVQTGVQSGMCTLIG-GFPQGSAADLLMASRFDDF----NGNGTVW--STDNNFGGVMADMVLDFSAETSRLDARKRLTGTAQVDLFICGDEPCNTVADLAYVLPASEPDAPPTLAYGYQRLPNGLLGVPTRYVVPAETQSVLLPSAAEAGPRAPRTVAWAIESPHWVGNVPSLLSFGAFARTLSIDGNLNW--GRVRAGNY----VDSRGV-CVTLFTPAHPWLNARGWGTTED 291          
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Match: A0A835YRT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.510e-20
Identity = 88/281 (31.32%), Postives = 117/281 (41.64%), Query Frame = 1
Query:   19 FCGDSITSGQTVGMCSMAGDGHFLRSSTDVFTLARFRDVQVPANSSEPIKAPSTDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCSDPDCNVIADLMYITP---ASDPNA------------NATLAYGY--------------------------------SRLQETLLGMPV---------------------KHITERDALIAT------------------LLGLHSGHNWDLNTIRIGNYLATAVDSEQPRCVTILMFVHPWMDAQGW 603
            FCG ++ SGQ VG C ++G  +F  S T +  ++RFR     A       A STD+ V G+LAD  +   + TSR++  K L G AQVD FLCSDP C V+ADLMY+ P   A+D NA            + T  +GY                                S+LQ+ +  +PV                        T   A +AT                  L G  +  N D + +RIG Y  T  D     CVTI+ FVH WMD +GW
Sbjct:  441 FCGAALISGQAVGACGLSGTRYFGGSGTALLGMSRFRSFAPGA------PALSTDRNVAGVLADVIITNNKKTSRVDLAKALQGTAQVDFFLCSDPTCVVMADLMYVAPTAPATDGNAITIATAYTRFPNSKTGVHGYYIPDSMHGALYDYSKVSFNTTEAATGAARNPYSKLQQVVWSLPVGVAAHPSGTTLDAATAAVEASAKTTAAAAAVATEQWFEAMPTLFEVGGATRLFGSEALANIDWSQLRIGTYELTNGD-----CVTIISFVHEWMDGRGW 710          
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Match: A0A836C7Q9_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Q9_9STRA)

HSP 1 Score: 814 bits (2102), Expect = 6.490e-282
Identity = 827/827 (100.00%), Postives = 827/827 (100.00%), Query Frame = 1
Query:   61 MRVAIATLALLLHLGTCGALVAPIATEAGARASCCSSCSYSAIRSGRRYRTVTSLLAKAKGEAPAASDEESASSSPATTEAAPAEFDVGTAAATGAAGAFLGWALARSVDLDIDLYGAVVGTVLGFYSTTLQGTAGSTSRAVGKVTRGAAEAAAKVVNDSKLGDKLLGAVGNELVDVLELTSAAVAKGVQASKPPETEVERQLAQTREKLXXXXXXXXXXXAAAEDAQRERSFMARRVKDAGLAPEALKAEGAQLEKLQSKVADMEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATLGQGKKAAAAAQKELAEAQAAAQACHHLKLLNVAAESDAAAAAEAAQAGARERIGGLESRLAAXXXXXXXXRRQAKEYEGKAAEAAAAQKTAGIGLMLCRRDGRHTSPLPPPPRSCEEFKQADISRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRAQTELTFELHATXXXXXXXXXXXXXXXXXXXXXXXXXXXARKLAAAEARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGQRCAAIVVFAALVTGLEAALDAAKKDAXXXXXXXXXXXXLPXXXXXXXXXXXXXXXXAAVPAKPXXXXXXXXXXXXXXAAATTAXXXXXXXXXXXXXXXTPPTPPKPAVQXXXXXXXXXXXXAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAPKVPAVPGSVAARAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGGGDLTARTVKDLKDLCKAAGLPQTGKKAELIARLEGKRG 2541
            MRVAIATLALLLHLGTCGALVAPIATEAGARASCCSSCSYSAIRSGRRYRTVTSLLAKAKGEAPAASDEESASSSPATTEAAPAEFDVGTAAATGAAGAFLGWALARSVDLDIDLYGAVVGTVLGFYSTTLQGTAGSTSRAVGKVTRGAAEAAAKVVNDSKLGDKLLGAVGNELVDVLELTSAAVAKGVQASKPPETEVERQLAQTREKLXXXXXXXXXXXAAAEDAQRERSFMARRVKDAGLAPEALKAEGAQLEKLQSKVADMEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATLGQGKKAAAAAQKELAEAQAAAQACHHLKLLNVAAESDAAAAAEAAQAGARERIGGLESRLAAXXXXXXXXRRQAKEYEGKAAEAAAAQKTAGIGLMLCRRDGRHTSPLPPPPRSCEEFKQADISRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRAQTELTFELHATXXXXXXXXXXXXXXXXXXXXXXXXXXXARKLAAAEARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGQRCAAIVVFAALVTGLEAALDAAKKDAXXXXXXXXXXXXLPXXXXXXXXXXXXXXXXAAVPAKPXXXXXXXXXXXXXXAAATTAXXXXXXXXXXXXXXXTPPTPPKPAVQXXXXXXXXXXXXAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAPKVPAVPGSVAARAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGGGDLTARTVKDLKDLCKAAGLPQTGKKAELIARLEGKRG
Sbjct:    1 MRVAIATLALLLHLGTCGALVAPIATEAGARASCCSSCSYSAIRSGRRYRTVTSLLAKAKGEAPAASDEESASSSPATTEAAPAEFDVGTAAATGAAGAFLGWALARSVDLDIDLYGAVVGTVLGFYSTTLQGTAGSTSRAVGKVTRGAAEAAAKVVNDSKLGDKLLGAVGNELVDVLELTSAAVAKGVQASKPPETEVERQLAQTREKLXXXXXXXXXXXAAAEDAQRERSFMARRVKDAGLAPEALKAEGAQLEKLQSKVADMEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATLGQGKKAAAAAQKELAEAQAAAQACHHLKLLNVAAESDAAAAAEAAQAGARERIGGLESRLAAXXXXXXXXRRQAKEYEGKAAEAAAAQKTAGIGLMLCRRDGRHTSPLPPPPRSCEEFKQADISRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQRAQTELTFELHATXXXXXXXXXXXXXXXXXXXXXXXXXXXARKLAAAEARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCGQRCAAIVVFAALVTGLEAALDAAKKDAXXXXXXXXXXXXLPXXXXXXXXXXXXXXXXAAVPAKPXXXXXXXXXXXXXXAAATTAXXXXXXXXXXXXXXXTPPTPPKPAVQXXXXXXXXXXXXAPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAPKVPAVPGSVAARAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGGGDLTARTVKDLKDLCKAAGLPQTGKKAELIARLEGKRG 827          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A836C8E5_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CMJ6_9STRA6.800e-7330.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZN9_9STRA1.140e-4041.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZC60_9STRA1.020e-2737.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZIR8_9STRA1.140e-2727.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKV3_9STRA1.210e-2734.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDF0_9STRA1.730e-2733.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAV9_9STRA4.630e-2732.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCW8_9STRA1.680e-2433.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRT5_9STRA4.510e-2031.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
BLAST of jgi.p|Trimin1|337874 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C7Q9_9STRA6.490e-282100.00SAP domain-containing protein n=1 Tax=Tribonema mi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:922237..928215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|337874|MIX46637_24_48
Hectar predicted targeting categoryother localisation
TranscriptId338196
TrackFilteredModels1
ProteinId337874
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|337874gene_3591Tribonema minus UTEX_B_3156 geneContig_9 922237..928215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|337874Trimin1|337874|MIX46637_24_48Tribonema minus UTEX_B_3156 polypeptideContig_9 922279..928215 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3591_7exon_3591_7Tribonema minus UTEX_B_3156 exonContig_9 922237..922776 -
exon_3591_6exon_3591_6Tribonema minus UTEX_B_3156 exonContig_9 923657..923837 -
exon_3591_5exon_3591_5Tribonema minus UTEX_B_3156 exonContig_9 923937..924072 -
exon_3591_4exon_3591_4Tribonema minus UTEX_B_3156 exonContig_9 924685..924799 -
exon_3591_3exon_3591_3Tribonema minus UTEX_B_3156 exonContig_9 924984..925128 -
exon_3591_2exon_3591_2Tribonema minus UTEX_B_3156 exonContig_9 926027..926205 -
exon_3591_1exon_3591_1Tribonema minus UTEX_B_3156 exonContig_9 927937..928215 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3591UTR3_3591Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 922237..922278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3591CDS_3591Tribonema minus UTEX_B_3156 CDSContig_9 927937..928215 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3591 ID=mRNA_3591|Name=jgi.p|Trimin1|337874|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1575bp|location=Sequence derived from alignment at Contig_9:922237..928215- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCACAGGCCTACTTCTGTGGCGACAGCATCACCTCGGGGCAGAC
CGTGGGCATGTGTTCCATGGCAGGGGATGGCCACTTCCTGCGCAGCAGCA
CGGACGTTTTCACGCTCGCACGCTTCAGAGACGTGCAAGTGCCAGCGAAC
AGCTCCGAGCCCATCAAGGCGCCCAGCACCGACCAGTATGTCAGAGGCCT
GCTTGCCGACTACAAGCTGCAGCTCACACAGACCACGTCCCGGCTCAACG
AGGTCAAAAAACTGACGGGCGTGGCACAGGTGGACCTGTTCCTGTGTTCC
GACCCCGACTGCAATGTCATTGCGGATCTCATGTACATCACACCTGCCAG
CGACCCGAACGCCAACGCAACGCTGGCCTATGGCTACTCGCGGCTTCAAG
AAACACTGTTGGGCATGCCCGTAAAGCACATCACGGAAAGGGATGCCCTC
ATTGCCACGCTGCTGGGCCTGCACAGTGGGCACAATTGGGACCTCAACAC
CATCCGCATCGGCAACTACCTTGCTACTGCAGTTGACTCAGAGCAGCCGC
GCTGCGTCACCATCCTCATGTTTGTGCACCCATGGATGGATGCGCAGGGG
TGGGACAAGCTCAACGACAACGACGACAACAACTACAACGGCAATGCAGA
TGATGACAAAGACAAAGATAATGCCGCCAACGGGTTCCATGTGTACGAGT
ACGGGCGCACCCTGCACTCGGGCACGGATGGCGGCCGCGAGCGTATGCTG
GAAGGGGGAGACTGGTGGAACGGCATCGATAATGTGGCAAACCCTGTCTT
CAAGCGCTTCAGGGGTTACTTGGACACAGGCAACCCCATATTCAAACTCG
GCATCGGGGAGGTGATTGACTGGAGGGATTGCGACAGATGGGGAGAGCTT
GGATGGGGGCCTGTCGACACCGACACCAGCGCCAGCGTTCCTGCCCAGGG
CATGTCGGAAGCGCTCCGAATCAGCTGGGTGAACGTGTCATATCAGCACC
CGACTACGCAACGCATGGACAGGGACTACTGGAAGACCACTCAGACGGAG
CTGTCTTCTTCAGACTTCTCTCCCACAGTGACGGGCGCTATAGTGAGCCT
GGCCATGACCGCCGCCGCACTGATCGCTACCTGCGTTGGCGTGGGCGACA
TTGTCGACTTCTTCCAGCGCGTCTTCCTGCTCAACAAGTACACAGGGCCG
GTTGCCGAGGTGGACTCCAAGGCGCTCGCGAAGCTACTCACAGCAACCGT
TTTCGCATTCAGCATAATCACGCCCGCTGCGCTGGAGATGATCGATGACA
TCAGCGTGCAGAACGAGAATCCCAATGGTCACGGGAGCGTGGTGCGTTGG
GTGGAGGGGCAGGCGCAGGGTTTTGGGGCTTACAAGATCACAGCCGCTGT
GTCCCTTCAGTATACGTGCAGCTACAGCAGCGTCGCTAGCGCTATCATCT
ACATTAATGTGGCTCTAGCAGTCGGGACATTGGGCATATGCATATTCAAG
ATTGCGCCCTATGAAGGGCCCAAGGGCAATTGAGACAATCCCTTTGTGAG
CAGATTAAAAAAATGGCATTTGAGG
back to top

protein sequence of jgi.p|Trimin1|337874

>Trimin1|337874|MIX46637_24_48 ID=Trimin1|337874|MIX46637_24_48|Name=jgi.p|Trimin1|337874|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=511bp
MQSQAYFCGDSITSGQTVGMCSMAGDGHFLRSSTDVFTLARFRDVQVPAN
SSEPIKAPSTDQYVRGLLADYKLQLTQTTSRLNEVKKLTGVAQVDLFLCS
DPDCNVIADLMYITPASDPNANATLAYGYSRLQETLLGMPVKHITERDAL
IATLLGLHSGHNWDLNTIRIGNYLATAVDSEQPRCVTILMFVHPWMDAQG
WDKLNDNDDNNYNGNADDDKDKDNAANGFHVYEYGRTLHSGTDGGRERML
EGGDWWNGIDNVANPVFKRFRGYLDTGNPIFKLGIGEVIDWRDCDRWGEL
GWGPVDTDTSASVPAQGMSEALRISWVNVSYQHPTTQRMDRDYWKTTQTE
LSSSDFSPTVTGAIVSLAMTAAALIATCVGVGDIVDFFQRVFLLNKYTGP
VAEVDSKALAKLLTATVFAFSIITPAALEMIDDISVQNENPNGHGSVVRW
VEGQAQGFGAYKITAAVSLQYTCSYSSVASAIIYINVALAVGTLGICIFK
IAPYEGPKGN*
back to top

mRNA from alignment at Contig_9:922237..928215-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3591 ID=mRNA_3591|Name=jgi.p|Trimin1|337874|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5979bp|location=Sequence derived from alignment at Contig_9:922237..928215- (Tribonema minus UTEX_B_3156 )
ATGCAGTCACAGGCCTACTTCTGTGGCGACAGCATCACCTCGGGGCAGAC CGTGGGCATGTGTTCCATGGCAGGGGATGGCCACTTCCTGCGCAGCAGCA CGGACGTTTTCACGCTCGCACGCTTCAGAGACGTGCAAGTGCCAGCGAAC AGCTCCGAGCCCATCAAGGCGCCCAGCACCGACCAGTATGTCAGAGGCCT GCTTGCCGACTACAAGCTGCAGCTCACACAGACCACGTCCCGGCTCAACG AGGTCAAAAAACTGACGGGCGTGGCACAGGTGGGCATAGCCAATGCTTGT GGGGGCACAGCTGACGACAAGGCATTCATCAGATAACAGGCCAACAAATG GCTTTGCCTGGGTACCAAACAAGCATACGTACTTCACAATGGTTGATTGA CCATTTCGCAATTGCAAGCCTGTACGCGCGGCCTGGCAATGCCTTGGAAA GATTGGATCAGATTTTTGACAACAATTGCGAACTTTAACTGCCATCGCTT CTCACAGTCGTATCTTTTGAGGCATGTGTATGTAATGATTGGACATGAAT CACACCCATGTATTACTTGAGCATTTAAATGCTACCATGCACACAGGGCG ACCAGGCATACTAGGCATGCAACAAATACTTTAACTGCCATCGCTTCTCA CAGTCGTATTTTTTTAGGCATGTGTATGTAATCATTGGACATGAATCACA CCTAGGGTTGCCAAAACCGTACCTTTTTTGCAAATATACTCCGTGAATCG TACCGTAATTTGACCGTAAACTCCTGCCTATTGAGGTTTTGGAGAACTTC GATACCACTTTTGCGTCTGGCATGTACAGTAAGCCCGAAGATACACCTCA GGGCACCCGCAGCTGTCGTCAAGATCAGCATGGTTTACGCTACAAATGCC GTTTACGCTACAAATGCCGTCGACCATATTTTTTCAATAATACCATTTTG GCAACCCTAATCACACCCATATATTACTTGAGCATTTAAATGCTACCATG CACACAGGGCGACCAGGCATACTAGGCATGCAACAAATATCAAATATATA GTGTAATATTGGTTGTGTAAAGAGCAAAGCAATGTGATGACTAGTGGTCA TTTTTCATTCATCTGAGGTGCGGCATGAACCTGTTCTGTAGACTAAGTCC TCTGTGCCAATATGCACGTGCTATCAAGGAAACCTTCATGCAAACCTTGA AGTAGACACGTTCAAGTACATGCAATGCCACCATATGCCACTAAGTTATG CTGTCAAGCTACACAGTCGGCAACAGTCACCAGCTCGAGCACTTGTTTGT GAAGTACACTGATAGTAGATCCAGGAAGGCTTGGGGGAAGGCTTGGTGAA CCATGCAATGTCCCATGCATGCGTTTGCACAAAGACTGGTCAGCTCTACA AGGCCTTTCAGAGCAGTACCGCAAAAAACATTCAGCTCGGCAAAGAACAG AGCAAACAGGAAGTACCTTTCCCAAGGCTGAGAATTGTGGAAGTACAGTG CGCCCTGCATCAACTTGTGTATACATATACATACATGTGAACAATGTGCA GAGCTGGCCATGGATATCTAGTAGACCAACATGCCAGCTGGCCATGGATA TCTAATAGACCAACATGCCAGCATTGGTGACAACGGCTGGTGGCTCTAAC ACAGCATGCTCTTGGTGGTTGCCGGCTTCTACAGACGAAGTCTCATGCCA ATGCAGACGCAGCATACATGACCTTTGTAGCACACAGGCTTTTCAACGCG TCAGCCTTCCAAATATCTGAGAGTTGGCCCAGCTAGCCATCTTGATTCCA CAGCAGCAACATACCTGCAGTGCACCAGGTGGAGGCACCATGTTGTCTCA CCTGCTCAATAGATCGGTGAGTGCCGCCAGGCCGGTTCTTGGCCCTAGCC GGAGTGCCTTGAGCAAGTGCAGAGGCGTGGCGCTATGTATTGGGCATATG CTTCTTACTTTATCCCCAAACCCCTGACAGCTTCCATGCGCCCTGACCAA TAAAACGCAGGTGGACCTGTTCCTGTGTTCCGACCCCGACTGCAATGTCA TTGCGGATCTCATGTACATCACACCTGCCAGCGACCCGAACGCCAACGCA ACGCTGGCCTATGGCTACTCGCGGCTTCAAGAAACACTGTTGGGCATGCC CGTAAAGCACATCACGGAAAGGGATGCCCTCATTGCCACGTACAGAGAGG ACGGGGAACTCATAGCAGGCACGGCTCGGGGCGGCACCTTGTCGTGGACT ATTGAAGATTTTGAGTGGGTGAACGCGACGCCAATTCATGATGTCATTCG GTGCGTGGTGAGGATCGCTCGTGTGCACATGTGCTGGGTGTGCAGCTGTA ACCAGGTGCACCTCACAGTAGCCAAGGTATCAAGTTCAAGAATGTGAGCA TCCAAATATGCTCACTTTCGCAGGAGTTTTTTCTATCCACGTTCTTTGCG ACAAATTTGCCAGTACCTAACTGCCAGCCCACAGCATATCATGTTGTAAT GCCGTGTGGTGATAGTGCAGCTGCATACTTCGAAGTACATGGTGCAGATC CAGCTACACTAGTGCTTTGGGTTGACGTGGTTTGATACGTTGAAGTACTT GGTTTTCGCCTGACGCGCGGCGTCTGTACATAAATTTGATGCCGTTTTCA CACGCCCTGCTCCATTCTCACTCACTTCAGCCTAGCAGCCTAGCATCGGC GGCATACGTGCAGGCTTCGGCTGCTCTTGACCAGCATAAGCATCTTCATA CTGTCACACACTATACATTAAATTTTGCAAGCAGCTTATGCTGGTGTGGT CTACAACTGCAAGATAGCCTCTGTCATCCTGAAGAGCATATACAGAGTGC GTTGTGGAGCCACGGACGTCTGCTAGTGTTCCCATCTCATAGGTGCGTCT GTATTCTGTGCACTCGAGATTTTATTCTGCCATAGCTGGACAGTGCTCAG CATTTCTTGTGCCCCTACAACGTGCTCCAACCTCCCCTCAGCGCGTTTCA TTCACTGATGAAGATGCATCTGCAGTGCGCGGCATTGACTGAGTCAGGCG GTACACGTGGCTCTCGTTGTGCTGGCGCTACCGTGAGGCTGCTGGGCCTG CACAGTGGGCACAATTGGGACCTCAACACCATCCGCATCGGCAACTACCT TGCTACTGCAGTTGACTCAGAGCAGCCGCGCTGCGTCACCATCCTCATGT TTGTGCACCCATGGATGGATGCGCAGGGGTGGGTGGGGCGACGCATCGAA CTGCGACAGTGCCACAGAAGTCTACGCGTTCGACTCCTATTTTACCGAGT CGAGCCTACTCTCAGACTGGCCACTTGACGGCCCAGTTGCAGCGAATGAA GACAACATTGTCTATCATTCTAACCTTGCCTCAAGCGTCAGCGGACTATC TTGGCATGCATGGGAGGACAAGCTCAACGACAACGACGACAACAACTACA ACGGCAATGCAGATGATGACAAAGACAAAGATAATGCCGCCAACGGGTTC CATGTGTACGAGTACGGGCGCACCCTGCACTGTGAATGGTAGGTGAGCTT GTGATTTGCCTGTGCATGCAGCAGGGGCCTTGTGACGATCGCCACCATGG AATGCAGGCTTTGACTGTGCTCAAGTGGGCATGTGCTGTCTTTTACGAAC ATGCAAGCATGCGCCTACGTGAAATCCAGTGTCACGTGTTGCCTTAGACG TGCCGATGAGCAGTATAGCTGAGCGTTGGTGAGTCTATCATCATGGCCTC TGTTTTGATCACAGTAGTATGACTTGTATGTACAATGTGTGTACAAGGCC TCCCATTGCTGTTGGTGAGCTGTTGTACTTGATTTGGCGCAAATACAATG CCGATGCGAGCACAATGTCATCACCATATATCAAGTGGTGCATTGCCGGG GCACACGCGTCATGCGCAGGTCTCAGGCTGATGTAGTATGTGCAATGCAC CCCTTCTCTGTTGCCAGGTCAAACTTCATGAACAGTCAGTCTGTTGATCC TGGCAACGACACCTGCAGCTCGGCCAGCCACAAGTATGCCGACAATATGT ACGTGGGCGATGACAAGATGACCCACCTTGTCATCGGCAGGGCCAGCATC TTGGCTTAGAACATAACAGATCCGCAGCTGCAGCCAGCAACAGCGGGCAC GGATGGCGGCCGCGAGCGTATGCTGGAAGGGGGAGACTGGTGGAACGGCA TCGATAATGTGGCAAACCCTGTCTTCAAGCGCTTCAGGGGTTACTTGGAC ACAGGCAACCCCATATTCAAACTCGGCATGTATGCACTGCGCAATGAACA GCAGGACCTGCCGTGGTGCAACCGCCGGCCAGAGCGGTTCAGCGAATCGC ATTAATTTGCCCACATCACGCTGGCCAGCGGGGAGGTGATTGACTGGAGG GATTGCGACAGATGGGGAGAGCTTGGATGGGGGCCTGTCGACACCGACAC CAGCGCCAGCGTTCCTGCCCAGGGCATGTCGGAAGCGCTCCGAATCAGCT GGGTGAACGTGTCATATCAGCACCCGACTACGCAACGCATGGACAGGGAC TACTGGAAGGTACGACAAGGCATGCTGCTGCATAACAGAGTTTAACCGTC AAGGTTGCTGTCAAAGTCGTCACCGCACCAAGCATGTAGCAGCTATGGTA ACCAAAGCTGCGTGCTCATTGCAAATATGTGCGGCTTGACTTTGACTCAT GCAGTATATTGATGCTGGTGTGTGGCTGCTGTTGACCTGAGCAATGCCGC GTAGGCTCTGGCTGATGCACTAGGCACGTCGTCATGGCTGATGCATTCAA CAATTGCATCAGTTGCAAATGCATGACTTTAATGATCATTATGATATGTC ACCCTTTCCACAGGCAAAATCGAATTGTTGGACAGCAAGCCATCACCTTT GCCGTAATCTCGCGCATCATAACTGACATTGCTGGTGCAATTAAGACAAC GACTGCATCCAAAGGTTAAAATTTTGTTTCGATATTGTGAACAGAGACAC ATATAAGCACCTTCAATGATCCGCAACATTATCATAATATACACTTGGTT TGTAGCAGCAATTCAATTTTAGTTTGCAAATTGTAACATCCCTAATTTGT GGTCTTTCCCGATTTAGAGTTCCCATCAACCCCCGACTGACTCTGACGCC ATTGTTGACCTTTGTGCTTGTTGTAAATATATATATATATATATATATAT ATATATATGCCATACCTTGAATACTTCAAAGCGCACGCATTCTTTTGCTG CTGTATTTCCAGCACGCCCAGCTGACCCACACTGTCCCTCCCTGTGCCCC TCTCTAATACTGTCCCTCCCTGTGCCCCTCTTTAGACTTCCAACATCGAG GGCATGTGAACACTGAGTACCCAATTCCGGGGGCTCTCCTTGCAGGAATT CAGACCGTGAAGCTGAGCGCCGCCACACTTCTGGCCCAGACCACTCAGAC GGAGCTGTCTTCTTCAGACTTCTCTCCCACAGTGACGGGCGCTATAGTGA GCCTGGCCATGACCGCCGCCGCACTGATCGCTACCTGCGTTGGCGTGGGC GACATTGTCGACTTCTTCCAGCGCGTCTTCCTGCTCAACAAGTACACAGG GCCGGTTGCCGAGGTGGACTCCAAGGCGCTCGCGAAGCTACTCACAGCAA CCGTTTTCGCATTCAGCATAATCACGCCCGCTGCGCTGGAGATGATCGAT GACATCAGCGTGCAGAACGAGAATCCCAATGGTCACGGGAGCGTGGTGCG TTGGGTGGAGGGGCAGGCGCAGGGTTTTGGGGCTTACAAGATCACAGCCG CTGTGTCCCTTCAGTATACGTGCAGCTACAGCAGCGTCGCTAGCGCTATC ATCTACATTAATGTGGCTCTAGCAGTCGGGACATTGGGCATATGCATATT CAAGATTGCGCCCTATGAAGGGCCCAAGGGCAATTGAGACAATCCCTTTG TGAGCAGATTAAAAAAATGGCATTTGAGG
back to top

Coding sequence (CDS) from alignment at Contig_9:922237..928215-

>mRNA_3591 ID=mRNA_3591|Name=jgi.p|Trimin1|337874|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1533bp|location=Sequence derived from alignment at Contig_9:922237..928215- (Tribonema minus UTEX_B_3156 )
ATGCAGTCACAGGCCTACTTCTGTGGCGACAGCATCACCTCGGGGCAGAC
CGTGGGCATGTGTTCCATGGCAGGGGATGGCCACTTCCTGCGCAGCAGCA
CGGACGTTTTCACGCTCGCACGCTTCAGAGACGTGCAAGTGCCAGCGAAC
AGCTCCGAGCCCATCAAGGCGCCCAGCACCGACCAGTATGTCAGAGGCCT
GCTTGCCGACTACAAGCTGCAGCTCACACAGACCACGTCCCGGCTCAACG
AGGTCAAAAAACTGACGGGCGTGGCACAGGTGGACCTGTTCCTGTGTTCC
GACCCCGACTGCAATGTCATTGCGGATCTCATGTACATCACACCTGCCAG
CGACCCGAACGCCAACGCAACGCTGGCCTATGGCTACTCGCGGCTTCAAG
AAACACTGTTGGGCATGCCCGTAAAGCACATCACGGAAAGGGATGCCCTC
ATTGCCACGCTGCTGGGCCTGCACAGTGGGCACAATTGGGACCTCAACAC
CATCCGCATCGGCAACTACCTTGCTACTGCAGTTGACTCAGAGCAGCCGC
GCTGCGTCACCATCCTCATGTTTGTGCACCCATGGATGGATGCGCAGGGG
TGGGACAAGCTCAACGACAACGACGACAACAACTACAACGGCAATGCAGA
TGATGACAAAGACAAAGATAATGCCGCCAACGGGTTCCATGTGTACGAGT
ACGGGCGCACCCTGCACTCGGGCACGGATGGCGGCCGCGAGCGTATGCTG
GAAGGGGGAGACTGGTGGAACGGCATCGATAATGTGGCAAACCCTGTCTT
CAAGCGCTTCAGGGGTTACTTGGACACAGGCAACCCCATATTCAAACTCG
GCATCGGGGAGGTGATTGACTGGAGGGATTGCGACAGATGGGGAGAGCTT
GGATGGGGGCCTGTCGACACCGACACCAGCGCCAGCGTTCCTGCCCAGGG
CATGTCGGAAGCGCTCCGAATCAGCTGGGTGAACGTGTCATATCAGCACC
CGACTACGCAACGCATGGACAGGGACTACTGGAAGACCACTCAGACGGAG
CTGTCTTCTTCAGACTTCTCTCCCACAGTGACGGGCGCTATAGTGAGCCT
GGCCATGACCGCCGCCGCACTGATCGCTACCTGCGTTGGCGTGGGCGACA
TTGTCGACTTCTTCCAGCGCGTCTTCCTGCTCAACAAGTACACAGGGCCG
GTTGCCGAGGTGGACTCCAAGGCGCTCGCGAAGCTACTCACAGCAACCGT
TTTCGCATTCAGCATAATCACGCCCGCTGCGCTGGAGATGATCGATGACA
TCAGCGTGCAGAACGAGAATCCCAATGGTCACGGGAGCGTGGTGCGTTGG
GTGGAGGGGCAGGCGCAGGGTTTTGGGGCTTACAAGATCACAGCCGCTGT
GTCCCTTCAGTATACGTGCAGCTACAGCAGCGTCGCTAGCGCTATCATCT
ACATTAATGTGGCTCTAGCAGTCGGGACATTGGGCATATGCATATTCAAG
ATTGCGCCCTATGAAGGGCCCAAGGGCAATTGA
back to top