mRNA_3581 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|159542
Unique NamemRNA_3581
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|159542 vs. uniprot
Match: A0A835YHJ8_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHJ8_9STRA)

HSP 1 Score: 667 bits (1721), Expect = 2.390e-239
Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 1 
Query:    1 MEAAEVISRSASRVLWSLNAIPRRVAPQRNLNALISSKRVNTPGAAAKVYLNPTSMEAVKVVSRGSACAVANVERERRILRATAHPYVVQLIRGYATQRRVYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHRDVKPENVLIDGDGHVKLCDFGLSKRAGDGLRGLHTLCGTAPYAAPEIRRCGGXXXXXXXXXAWGCGYGTAVDWWALGILTYEMLVGSLPWPHDTPNAEPDYELKVPQYLSRGARDLVAALLEPNATLRLGAWGSREVRAHAFFAGMDWQRLARRQVRSPFNPLAARAAXXXXXXXXXXXXILAPALXXAQTWNWPPSGXXXXXXXXXXXXGGFSGTGGFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIGVGVWGW 1260
            MEAAEVISRSASRVLWSLNAIPRRVAPQRNLNALISSKRVNTPGAAAKVYLNPTSMEAVKVVSRGSACAVANVERERRILRATAHPYVVQLIRGYATQRRVYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHRDVKPENVLIDGDGHVKLCDFGLSKRAGDGLRGLHTLCGTAPYAAPEIRRCGGXXXXXXXXXAWGCGYGTAVDWWALGILTYEMLVGSLPWPHDTPNAEPDYELKVPQYLSRGARDLVAALLEPNATLRLGAWGSREVRAHAFFAGMDWQRLARRQVRSPFNPLAARAAXXXXXXXXXXXXILAPALXXAQTWNWPPSGXXXXXXXXXXXXGGFSGTGGFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIGVGVWGW
Sbjct:    1 MEAAEVISRSASRVLWSLNAIPRRVAPQRNLNALISSKRVNTPGAAAKVYLNPTSMEAVKVVSRGSACAVANVERERRILRATAHPYVVQLIRGYATQRRVYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHRDVKPENVLIDGDGHVKLCDFGLSKRAGDGLRGLHTLCGTAPYAAPEIRRCGGXXXXXXXXXAWGCGYGTAVDWWALGILTYEMLVGSLPWPHDTPNAEPDYELKVPQYLSRGARDLVAALLEPNATLRLGAWGSREVRAHAFFAGMDWQRLARRQVRSPFNPLAARAAXXXXXXXXXXXXILAPALXXAQTWNWPPSGXXXXXXXXXXXXGGFSGTGGFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIGVGVWGW 420
[Close]
BLAST of jgi.p|Trimin1|159542 vs. uniprot
Match: H3G5D8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5D8_PHYRM)

HSP 1 Score: 189 bits (480), Expect = 1.990e-53
Identity = 112/281 (39.86%), Postives = 154/281 (54.80%), Query Frame = 1 
Query:  130 GAAAKVYL----NPTSMEAVKVVSRGSACAVANVER---ERRILRATAHPYVVQLIRGYATQRRVYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHRDVKPENVLIDGDGHVKLCDFGLSKRA-GDGLRGLHTLCGTAPYAAPEIRRCGGXXXXXXXXXAWGCGYGTAVDWWALGILTYEMLVGSLPW----PHDTPNAEPDYELKVPQYLSRGARDLVAALLEPNATLRLGAWGSREVRAHAFFAGMDWQRLARRQVRSPFNP 936
            G+  KV L    + + + AVK++S+ +      VE    ERR+L + +HP+VV L   + T+ ++Y  L + PGGD+F  L   G  PE + K Y AE+  AL H+H+ G  +RD+KPEN+++D DGHVKL DFGL+K      L G +T+CGT  Y  PEI                  G+GTAVDWW LG++ YEML G  PW      +  N     EL+ PQ LS  A +L+  LL  +   RLGA   RE+  H FFA +DW  L  RQ+   + P
Sbjct:   16 GSFGKVLLVRKKHSSQLFAVKILSKPAIVKKQQVEHTRTERRVLASVSHPFVVCLHYAFQTKDKLYFVLDYCPGGDMFFHLSRCGCFPEAMAKFYAAEIVLALIHLHEQGIVYRDLKPENIMLDVDGHVKLADFGLAKEGITSELNGTYTMCGTPEYLPPEILN--------------RAGHGTAVDWWNLGMVLYEMLTGRPPWYTQDRQELFNRLRGAELEFPQGLSPEAMNLIEGLLTRDPAKRLGAIDVREITYHPFFADIDWNLLYNRQMEPLYRP 282
[Close]
BLAST of jgi.p|Trimin1|159542 vs. uniprot
Match: A0A485LS57_9STRA (Aste57867_24382 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS57_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.160e-51
Identity = 108/253 (42.69%), Postives = 140/253 (55.34%), Query Frame = 1 
Query:  208 VANVERERRILRATAHPYVVQLIRGYATQRRVYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHRDVKPENVLIDGDGHVKLCDFGLSKRA-GDGLRGLHTLCGTAPYAAPEIRRCGGXXXXXXXXXAWGCGYGTAVDWWALGILTYEMLVGSLPWPHDTPNAEPDY----ELKVPQYLSRGARDLVAALLEPNATLRLGAWGSREVRAHAFFAGMDWQRLARRQVRSPFNPLAARA 951
            V +   ERR+L  T HP++V L   + T +R+Y  L + PGG+LF  L  +  LPE +   Y AE+A AL H+H LG  +RD+KPEN+L+  DGHVKL DFGL+K    DG+ G ++LCGT  Y  PEI                  G+GTAVDWW LG++ YEML G  PW  +      D      L  P Y+SR A  L+  LL  N   RLGA G+ EV+AH FF  +DW  L   ++  PF P    A
Sbjct:  333 VEHTRTERRVLGYTKHPFIVGLHYAFQTPQRLYFVLDYCPGGELFYHLTRMKKLPEHMACYYAAEIALALEHLHSLGVVYRDLKPENILLTKDGHVKLADFGLAKEGITDGVNGTNSLCGTPEYLPPEILD--------------RLGHGTAVDWWNLGMVLYEMLTGLPPWYTNDRQKLFDRLRSARLHFPPYVSRKAESLIRCLLNRNPAERLGARGAHEVKAHPFFDSIDWPALLALKMPPPFRPCRTTA 571
[Close]
BLAST of jgi.p|Trimin1|159542 vs. uniprot
Match: A0A836CFL2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL2_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.650e-51
Identity = 111/291 (38.14%), Postives = 159/291 (54.64%), Query Frame = 1 
Query:  106 SSKRVNTPGAAAKVYL----NPTSMEAVKVVSRGSACAVANVER---ERRILRATAHPYVVQLIRGYATQRRVYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHRDVKPENVLIDGDGHVKLCDFGLSK-RAGDGLRGLHTLCGTAPYAAPEIRRCGGXXXXXXXXXAWGCGYGTAVDWWALGILTYEMLVGSLPWPHDTPNAEPDYE------LKVPQYLSRGARDLVAALLEPNATLRLGAWGSREVRAHAFFAGMDWQRLARRQVRSPFNP 936
            S  RV   G+  KV L    +   + A+KV+ +G       VER   ERR+L    HP++++L   + T  ++YL L + PGG+LF  L      PE +V+ Y A+L  AL H+H  G  +RD+KPEN+L+D +GHVKL DFGL+K    +   G H++CGT  Y APE+                  G+GTAVDWW LG+L YEML G  PW   T + +  +E      L +P+ +S  A  ++  LL  N   RLGA G +++  H FF G+DW  L  +++ +P NP
Sbjct:   66 SMLRVLGKGSYGKVVLVRKKSTQVLYAMKVLKKGDVVRKRQVERTKIERRVLGHIDHPFLMKLHFAFQTGNKLYLVLDYCPGGELFFHLSRYKRFPEGVVRFYAAQLVCALKHLHDGGIIYRDIKPENILLDAEGHVKLGDFGLAKDNVTEAAFGAHSVCGTPEYMAPEVIN--------------KAGHGTAVDWWGLGMLMYEMLTGLPPWY--TKDRQKLFERLRGAPLIMPKGISPPAASIIQGLLTRNPAKRLGALGGQQIMGHEFFRGLDWDALLSKRIPAPLNP 340
[Close]
BLAST of jgi.p|Trimin1|159542 vs. uniprot
Match: H3GWJ8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GWJ8_PHYRM)

HSP 1 Score: 194 bits (494), Expect = 1.740e-51
Identity = 113/283 (39.93%), Postives = 159/283 (56.18%), Query Frame = 1 
Query:  130 GAAAKVYL----NPTSMEAVKVVSRGSACAVANVER---ERRILRATAHPYVVQLIRGYATQRRVYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHRDVKPENVLIDGDGHVKLCDFGLSKRA-GDGLRGLHTLCGTAPYAAPEIRRCGGXXXXXXXXXAWGCGYGTAVDWWALGILTYEMLVGSLPWPHDTPNAEPDYE------LKVPQYLSRGARDLVAALLEPNATLRLGAWGSREVRAHAFFAGMDWQRLARRQVRSPFNP 936
            G+  KV L        + A+K++S+ +      VE    ERR+L  T HP++V L   + T +R+Y  L + PGG+LF  L  +  LPE +   Y AE+A AL H+H LG  +RD+KPEN+L+  DGH+KL DFGL+K    DG+ G ++LCGT  Y  PEI                  G+GTAVDWW LG++ YEML G  PW   T + +  +E      L  P Y+SR A  L+  LL  N   RLG+ G+ +V+ H FF  ++W +LA++Q+  PF P
Sbjct:  461 GSFGKVVLVGHKTTKKLYAMKILSKENIVKRKQVEHTRTERRVLGCTRHPFIVGLHYAFQTAQRLYFVLDYCPGGELFYHLSRMKKLPEHMACFYAAEIALALEHLHGLGVVYRDLKPENILLTKDGHIKLADFGLAKEGIRDGVNGTNSLCGTPEYLPPEILD--------------RLGHGTAVDWWNLGMVLYEMLTGLPPWY--TNDRKKLFERLRSARLHFPPYVSRRAEALIRQLLNRNPAERLGSKGAHQVKNHLFFESINWAKLAKKQIAPPFRP 727
[Close]
BLAST of jgi.p|Trimin1|159542 vs. uniprot
Match: D0N5U9_PHYIT (Protein kinase, putative n=18 Tax=Phytophthora TaxID=4783 RepID=D0N5U9_PHYIT)

HSP 1 Score: 194 bits (493), Expect = 2.740e-51
Identity = 114/283 (40.28%), Postives = 158/283 (55.83%), Query Frame = 1 
Query:  130 GAAAKVYL----NPTSMEAVKVVSRGSACAVANVER---ERRILRATAHPYVVQLIRGYATQRRVYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHRDVKPENVLIDGDGHVKLCDFGLSKRA-GDGLRGLHTLCGTAPYAAPEIRRCGGXXXXXXXXXAWGCGYGTAVDWWALGILTYEMLVGSLPWPHDTPNAEPDYE------LKVPQYLSRGARDLVAALLEPNATLRLGAWGSREVRAHAFFAGMDWQRLARRQVRSPFNP 936
            G+  KV L    +   + A+K++S+ +      VE    ERR+L  T HP++V L   + T +R+Y  L + PGG+LF  L  +  LPE +   Y AE+  AL H+H LG  +RD+KPEN+L+  DGH+KL DFGL+K    DG  G ++LCGT  Y  PEI                  G+GTAVDWW LG++ YEML G  PW   T + +  +E      L  P Y+SR A  L+  LL  N   RLG+ G+  V++H FF  +DW +LA++QV  PF P
Sbjct:  467 GSFGKVVLVGHKSSKKLYAMKMLSKENIVKRKQVEHTRTERRVLGCTRHPFIVGLHYAFQTAQRLYFVLDYCPGGELFYHLSRMKKLPEHMACFYAAEITLALEHLHGLGVVYRDLKPENILLTKDGHIKLADFGLAKEGIRDGANGTNSLCGTPEYLPPEILD--------------RLGHGTAVDWWNLGMVLYEMLTGLPPWY--TNDRKKLFERLRSARLHFPPYVSRRAEALIRQLLNRNPAERLGSKGAHHVKSHLFFESVDWAKLAKKQVPPPFRP 733
[Close]
BLAST of jgi.p|Trimin1|159542 vs. uniprot
Match: M4B2Z9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2Z9_HYAAE)

HSP 1 Score: 192 bits (489), Expect = 3.570e-51
Identity = 109/268 (40.67%), Postives = 154/268 (57.46%), Query Frame = 1 
Query:  163 SMEAVKVVSRGSACAVANVER---ERRILRATAHPYVVQLIRGYATQRRVYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHRDVKPENVLIDGDGHVKLCDFGLSKR-AGDGLRGLHTLCGTAPYAAPEIRRCGGXXXXXXXXXAWGCGYGTAVDWWALGILTYEMLVGSLPWPHDTPNAEPDYE------LKVPQYLSRGARDLVAALLEPNATLRLGAWGSREVRAHAFFAGMDWQRLARRQVRSPFNP 936
            ++ A+K++S+ +      VE    ERR+L  T HP++V L   + T RR+Y  L + PGG+LF  L  +  LPE + + Y AE+  AL H+H LG  +RD+KPEN+L+  DGH+KL DFGL+K    +G  G ++LCGT  Y  PEI                  G+GTAVDWW LG++ YEML G  PW   T + +  +E      L  P Y+SR A  L+  LL  +   RLG+ G++ V+ H FF G+DW ++A +QV  PF P
Sbjct:  382 TLYAMKILSKENIVKRKQVEHTRTERRVLGCTRHPFIVGLHYAFQTARRLYFVLDYCPGGELFYHLSRMKKLPEHMARFYAAEITLALEHLHGLGVVYRDLKPENILLTKDGHIKLADFGLAKENIHEGATGTNSLCGTPEYLPPEILD--------------RLGHGTAVDWWNLGMVLYEMLTGLPPWY--TNDRKKLFERLRSARLHFPPYISRRAEALIRQLLNRDPAERLGSKGAQHVKNHIFFDGVDWAKVAVKQVTPPFRP 633
[Close]
BLAST of jgi.p|Trimin1|159542 vs. uniprot
Match: A0A835Z1H7_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1H7_9STRA)

HSP 1 Score: 187 bits (476), Expect = 8.560e-51
Identity = 107/252 (42.46%), Postives = 147/252 (58.33%), Query Frame = 1 
Query:  208 VANVERERRILRATAHPYVVQLIRGYATQRRVYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHRDVKPENVLIDGDGHVKLCDFGLSKRA-GDGLRGLHTLCGTAPYAAPEIRRCGGXXXXXXXXXAWGCGYGTAVDWWALGILTYEMLVGSLPWPHDTPNAEPDYE------LKVPQYLSRGARDLVAALLEPNATLRLGAWG--SREVRAHAFFAGMDWQRLARRQVRSPFNP 936
            V + + ER +L    HP++V L   + T+ +++  L +  GG+LF  L  LG  PE   K Y AE+A AL HVHKLG  +RD+KPENVL+DG+GH++L DFGLSK    +   G H+ CGT  Y APEI                  G+G AVDWW+LG L YEML G LP P    + E  ++      L  P+YLS  ARD++  LL  + +LRLG+    + E++ H FF  +DW R+ RR++RSP+ P
Sbjct:  195 VEHTKTERNVLGYIRHPFIVGLNMAFQTRDKLFFVLDYCAGGELFFHLGKLGKFPEPRSKFYAAEIALALEHVHKLGIVYRDLKPENVLLDGEGHIRLTDFGLSKEGITNNTSGAHSFCGTPEYLAPEILN--------------RQGHGRAVDWWSLGALLYEMLTG-LP-PFYCRDREKLFDKIRRAQLTYPRYLSEAARDILHGLLTRDPSLRLGSSSEDAGEIKRHMFFGAIDWDRMLRRELRSPWQP 430
[Close]
BLAST of jgi.p|Trimin1|159542 vs. uniprot
Match: A0A3M6VNY9_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNY9_9STRA)

HSP 1 Score: 192 bits (488), Expect = 9.830e-51
Identity = 112/283 (39.58%), Postives = 157/283 (55.48%), Query Frame = 1 
Query:  130 GAAAKVYL----NPTSMEAVKVVSRGSACAVANVER---ERRILRATAHPYVVQLIRGYATQRRVYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHRDVKPENVLIDGDGHVKLCDFGLSKRA-GDGLRGLHTLCGTAPYAAPEIRRCGGXXXXXXXXXAWGCGYGTAVDWWALGILTYEMLVGSLPWPHDTPNAEPDYE------LKVPQYLSRGARDLVAALLEPNATLRLGAWGSREVRAHAFFAGMDWQRLARRQVRSPFNP 936
            G+  KV L       ++ A+K++S+ +      VE    ERR+L  T HP++V L   + T  R++  L + PGG+LF  L  +  LPE +   Y AE+  AL H+H LG  +RD+KPEN+L+  DGH+KL DFGL+K    DG+ G ++LCGT  Y  PEI                  G+GTAVDWW LG++ YEML G  PW   T + +  +E      L  P Y+SR A  L+  LL  N   RLG+ G+ +V+ H FF  +DW +L ++QV  PF P
Sbjct:  432 GSFGKVVLVGHKTTKNLFAMKILSKENIVKRKQVEHTRTERRVLGCTRHPFIVGLHYAFQTAERLFFVLDYCPGGELFYHLSRMKKLPEHMACFYAAEITLALEHLHGLGVVYRDLKPENILLTKDGHIKLADFGLAKEGIRDGVNGTNSLCGTPEYLPPEILD--------------RLGHGTAVDWWNLGMVLYEMLTGLPPWY--TNDRKKLFERLRSARLHFPPYVSRRAEALIRQLLNRNPAERLGSKGAHDVKTHLFFESIDWAKLLKKQVTPPFRP 698
[Close]
BLAST of jgi.p|Trimin1|159542 vs. uniprot
Match: A0A835YWS5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS5_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.860e-50
Identity = 110/264 (41.67%), Postives = 148/264 (56.06%), Query Frame = 1 
Query:  172 AVKVVSRGSACAVANV-ERERRILRATA-HPYVVQLIRGYATQRRVYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHRDVKPENVLIDGDGHVKLCDFGLSKR---AGDGLRGLHTLCGTAPYAAPEIRRCGGXXXXXXXXXAWGCGYGTAVDWWALGILTYEMLVGSLPWPH----DTPNAEPDYELKVPQYLSRGARDLVAALLEPNATLRLGAWGSREVRAHAFFAGMDWQRLARRQVRSPFNP 936
            AVKV  +G+      +  RE RI+++   HP+VV L         +Y+ L++  GGDLF  L +LG+LPER  +  VAEL  AL+H+H  G  HRDVKPENVL+D  GH +L DFGL+       DG  G  ++CG+  Y APE+                G GYG A DWW LG+L  E+  G LPW      D   A     L +P YLS  A D +   L P+  +R+G+ G+ EV+ HAFF+G+ W R+AR++V  PFNP
Sbjct:   81 AVKVCRKGTTRRQLEICRREARIMKSIPPHPFVVGLSHCVEDDGNIYMALEYCMGGDLFTHLGELGTLPERAARHLVAELTLALAHLHADGIMHRDVKPENVLLDARGHARLADFGLATSNITRADG--GAMSICGSPGYIAPEVLA--------------GRGYGLAADWWQLGMLLLEVTTGQLPWAGATLGDVSRAFRSVPLDLPAYLSSDATDFLILALCPHPGMRIGSLGADEVKRHAFFSGVRWGRVARKEVPPPFNP 328
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|159542 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YHJ8_9STRA2.390e-239100.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
H3G5D8_PHYRM1.990e-5339.86Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A485LS57_9STRA1.160e-5142.69Aste57867_24382 protein n=1 Tax=Aphanomyces stella... [more]
A0A836CFL2_9STRA1.650e-5138.14Kinase-like domain-containing protein n=1 Tax=Trib... [more]
H3GWJ8_PHYRM1.740e-5139.93Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D0N5U9_PHYIT2.740e-5140.28Protein kinase, putative n=18 Tax=Phytophthora Tax... [more]
M4B2Z9_HYAAE3.570e-5140.67Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A835Z1H7_9STRA8.560e-5142.46Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A3M6VNY9_9STRA9.830e-5139.58Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A835YWS5_9STRA1.860e-5041.67Kinase-like domain-containing protein n=1 Tax=Trib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:859548..863248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|159542|e_gw1.9.48.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko01521,ko01522,ko04012,ko04066,ko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04350,ko04371,ko04666,ko04714,ko04910,ko04931,ko05165,ko05200,ko05205,ko05210,ko05212,ko05221,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04012,map04066,map04068,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04350,map04371,map04666,map04714,map04910,map04931,map05165,map05200,map05205,map05210,map05212,map05221,map05224,map05225,map05226,map05231
KEGG koko:K04688,ko:K08286,ko:K13303
EC2.7.11.1
Descriptionglycogen cell differentiation involved in embryonic placenta development
COG categoryKLT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0515@1|root,KOG0690@2759|Eukaryota
Evalue9.37e-53
Seed ortholog42099.EPrPV00000018460
Hectar predicted targeting categoryother localisation
TranscriptId159864
TrackFilteredModels1
ProteinId159542
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159542gene_3581Tribonema minus UTEX_B_3156 geneContig_9 859548..863248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|159542Trimin1|159542|e_gw1.9.48.1Tribonema minus UTEX_B_3156 polypeptideContig_9 859548..863248 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3581_5exon_3581_5Tribonema minus UTEX_B_3156 exonContig_9 859548..859927 -
exon_3581_4exon_3581_4Tribonema minus UTEX_B_3156 exonContig_9 860240..860399 -
exon_3581_3exon_3581_3Tribonema minus UTEX_B_3156 exonContig_9 860466..860520 -
exon_3581_2exon_3581_2Tribonema minus UTEX_B_3156 exonContig_9 861495..861781 -
exon_3581_1exon_3581_1Tribonema minus UTEX_B_3156 exonContig_9 862868..863248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3581CDS_3581Tribonema minus UTEX_B_3156 CDSContig_9 862868..863248 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3581 ID=mRNA_3581|Name=jgi.p|Trimin1|159542|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1263bp|location=Sequence derived from alignment at Contig_9:859548..863248- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCGGCAGAGGTTATCAGCAGGAGCGCGAGCCGCGTCCTTTGGAG
TCTTAACGCTATCCCTCGTCGCGTTGCGCCTCAACGCAACTTGAATGCTC
TCATCAGCTCCAAACGCGTCAATACCCCAGGCGCGGCAGCCAAGGTGTAC
CTGAACCCCACCTCCATGGAGGCCGTGAAGGTCGTCAGCAGGGGCAGCGC
GTGCGCTGTCGCGAACGTGGAGCGCGAGCGGCGCATCCTGCGCGCCACCG
CGCACCCGTACGTGGTGCAGCTCATCCGCGGCTACGCGACGCAGCGCAGG
GTGTACCTGTGCCTGAAGCACGCGCCGGGCGGCGACCTGTTCGGCGTGCT
GCGGGACCTGGGGTCGCTGCCGGAGAGGCTGGTGAAGCTGTACGTCGCGG
AGCTGGCGGCGGCGCTGTCGCACGTGCACAAGCTCGGCTACGCGCACCGC
GACGTCAAGCCAGAAAACGTCCTCATCGACGGCGACGGCCACGTGAAGCT
GTGCGACTTTGGCCTGAGCAAGCGCGCCGGCGACGGTCTGCGCGGCCTGC
ACACGCTGTGCGGCACCGCGCCGTACGCGGCGCCGGAGATTCGCCGCTGC
GGCGGCGGCGGCGGCAGCGGCGGCGCCGCGGCGGCGTGGGGCTGCGGCTA
CGGCACCGCCGTGGACTGGTGGGCGCTAGGCATCCTCACCTACGAGATGC
TCGTGGGCAGCCTGCCGTGGCCCCACGACACCCCTAACGCCGAGCCAGAT
TACGAGCTGAAGGTGCCGCAGTACCTGTCGCGGGGGGCTAGGGACCTGGT
GGCAGCGCTCCTCGAGCCGAACGCGACGCTGCGGCTGGGGGCGTGGGGGT
CGCGGGAAGTGCGCGCGCACGCCTTCTTTGCAGGCATGGACTGGCAGCGG
CTCGCGCGCAGGCAGGTGCGCAGCCCGTTCAACCCTCTCGCCGCGCGCGC
CGCCGCCGCTGCTGCCAGCGCCGCCGCCGCCATCCCGCCCATCCTCGCGC
CTGCGCTCGCCCCCGCTCAAACGTGGAACTGGCCGCCCAGCGGCAGCGGC
GGCGGCGGCGGCGGGTTTGGCAATGGCTTCGGCGGCTTTAGCGGCACTGG
CGGTTTCACGTGGAGCAGCAGCGGCGGCAGCGGCGACGGCGGCGGCGGCG
CGCTGAGCACGGGCAGCGTGAGCAGCACGCTCAGCCTGATGAGCGCGTGT
GCGAGTCCGTGCGGCGGCGGCAGCGGCGGCGCTGCCATCGGCGTTGGCGT
GTGGGGGTGGTGA
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protein sequence of jgi.p|Trimin1|159542

>Trimin1|159542|e_gw1.9.48.1 ID=Trimin1|159542|e_gw1.9.48.1|Name=jgi.p|Trimin1|159542|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=421bp
MEAAEVISRSASRVLWSLNAIPRRVAPQRNLNALISSKRVNTPGAAAKVY
LNPTSMEAVKVVSRGSACAVANVERERRILRATAHPYVVQLIRGYATQRR
VYLCLKHAPGGDLFGVLRDLGSLPERLVKLYVAELAAALSHVHKLGYAHR
DVKPENVLIDGDGHVKLCDFGLSKRAGDGLRGLHTLCGTAPYAAPEIRRC
GGGGGSGGAAAAWGCGYGTAVDWWALGILTYEMLVGSLPWPHDTPNAEPD
YELKVPQYLSRGARDLVAALLEPNATLRLGAWGSREVRAHAFFAGMDWQR
LARRQVRSPFNPLAARAAAAAASAAAAIPPILAPALAPAQTWNWPPSGSG
GGGGGFGNGFGGFSGTGGFTWSSSGGSGDGGGGALSTGSVSSTLSLMSAC
ASPCGGGSGGAAIGVGVWGW*
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mRNA from alignment at Contig_9:859548..863248-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3581 ID=mRNA_3581|Name=jgi.p|Trimin1|159542|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3701bp|location=Sequence derived from alignment at Contig_9:859548..863248- (Tribonema minus UTEX_B_3156 )
ATGGAAGCGGCAGAGGTTATCAGCAGGAGCGCGAGCCGCGTCCTTTGGAG
TCTTAACGCTATCCCTCGTCGCGTTGCGCCTCAACGCAACTTGAATGCTC
TCATCAGCTCCAAACGCGTCAATACCCCAGGCGCGGCAGCCAAGGTGTAC
CTGAACCCCACCTCCATGGAGGCCGTGAAGGTCGTCAGCAGGGGCAGCGC
GTGCGCTGTCGCGAACGTGGAGCGCGAGCGGCGCATCCTGCGCGCCACCG
CGCACCCGTACGTGGTGCAGCTCATCCGCGGCTACGCGACGCAGCGCAGG
GTGTACCTGTGCCTGAAGCACGCGCCGGGCGGCGACCTGTTCGGCGTGCT
GCGGGACCTGGGGTCGCTGCCGGAGAGGCTGGTGCGTCACCCGCTTGAAG
TTGTACACCTGTTGAAATCGCCTCTATCTCGTCCTGAGTCAACCACTTGA
AGCTGTGCACGTATAGGACGGAACCGCTTCCACTTAGTAGTCCTGGAATA
CCAGTACACCCAGTGCACATTGTGGCGCATAGGAGCCATTGCCGCAGCGG
CTGGTGCGTGCACCGCTTGAAGTTGCACACGCGTAGGTCGACACCGCCTC
CATTTTGTGGTCTTGACTACCTGTACAGCACCCTTCACGTGTAGGGCGAA
ATCGCTGCCATTCAGTCCTGATACCTGTACACGCAATGCACACCTTGAGA
CGCATAGGAGTCGTGACAAAATGCGGGGCGTCGGTAGGGCGCAACATCAG
TCTACATTTCAGCTTTGGCAAATGAAGACATGTGAGTAACATGAAGAAGT
TCAGTCGGGGCGGCCGCTCATTGAGAGCTTTGCAAGCGGCTCGCGATGCG
CATCATCGGGTTTGCCAGAGGTGTAAGTCTTCTACATAAGCTGCTGACCG
GTGCGGCAGCATGGCACCCAAAGCAACCTTCTCAGCTTGTCACGGCGCGC
AATTGCCGCTTTGAGATGACAGGAGAGAGGCTTGTCTGTCGACTTCAACT
GTGTGGCAGCAGGACACCCACAGCAAGCTCTAGCTTGGCATTGCATGCAC
AGTTTGTTACATTGCCCTTGAGGTGACAGGAGAGGCTGCGCGTCGGTCAA
CTTCAAGTGTAGTTCACCTCCAAATTCTGCTGTCGGACGCTGCTTCCAGC
AGTTGCGGTGCGACAACGCACCCCTTTGTTAAGCCGCCATGCCTGAGACT
TGCGATGGCTGATGACCACGTTTATCTTACTGGTAGGGTTTGGGTGTGGG
ATCCTAGTGATGAAGCCGCTAGGTTTCTGTTCACACATCGAGGGTGTGAG
GGTTAAAGTGAGGGTTGGGGTCAGGCCAACCCCAATCCTAAACACTCTCT
AAGGCCATGAGGTGGCGTCTAGGGTTTGGCGGCCTGCGCAGGCCTGAGAG
TATCAGAATTGATGCTCACGTTCGTTTGCAATGAATGCGTCATTCGCGAT
GCCCCGCGGCGGCGCAGGTGAAGCTGTACGTCGCGGAGCTGGCGGCGGCG
CTGTCGCACGTGCACAAGCTCGGCTACGCGCACCGCGACGTCAAGCCAGA
AAACGTCCTCATCGACGGCGACGGCCACGTGAAGCTGTGCGACTTTGGCC
TGAGCAAGCGCGCCGGCGACGGTCTGCGCGGCCTGCACACGCTGTGCGGC
ACCGCGCCGTACGCGGCGCCGGAGATTCGCCGCTGCGGCGGCGGCGGCGG
CAGCGGCGGCGCCGCGGCGGCGTGGGGCTGCGGCTACGGCACCGCCGTGG
ACTGGTGAGCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTA
CTTGCGTCATTTCCGTCTGCCTCGCTCATGTTTTGTGACGTGAGCTCAGC
GCCACGCGTTCGCAACGCACACGGTGAGAGGCGCAGCCGCTGCGGCAGCG
GTAACGCCACGTGGGGCGGCGGCTGCAGGCTGGCGAGCGCTGCTGCTGCC
GCTGTTTGTCGCCGTCCGCCTTGTGCAGCCATGCCGTGCACGCTTGTAGT
TCAAGGTGAGGTCAATGGATGTGAACGGAGGCATACTGCTGCTGCTGCGG
GTGCGCCGCCGCGGCGTGCGGCGGCGGCTCCAGCACCGCTGTCGACCGCT
GCTGCCGCCGCCGGCTACGTGGCCGTCTGCCTCTGTGTTTTGTGTGAATT
CCTGCGTTCAGCGCTTCATGGATGCCGGATCCATCAAGCTCACGGCCGGC
CACCGTACCGTTCACATCGCGCATGATACTTTGAAGTATGTAGGGTATGC
GTCGCTGCCGCACGGGGCGGCGGCTGCAGCACTGCTGTCGTGTGATGAGC
GCTGCTGCTGTTGCTGCTGCTGCTGCTGCTTTCAGCGTCGTCCACCTTGC
CTCACGCGGATTTTGTGAGTGAAATCAGTCAGGACAAACGACCCTTTTCA
TCCCCCACCGCGCCAGCCATAGCACGTTGACCATGAGCACGCGGCCAACC
TGCTACGCGCTTGCCGTTGTTGTGCCTGTACCCCCCCTCCCCCCCTCTCC
CCTATCTATAGCATGGTGACCATAAGCTGCAGTAGTACGGTCTGCACTTA
CCTATAAAGTGAAACAATACGGTCTGCACTTACCCATTGTTGCGCCCCTC
TCCCCCGCTCCCCCTAAAATACCTAGCACGTTGACCGCAAACTCAACCAA
TATGCGCTTTCTCCTCCCTCCCCTTCCCCTTCATCTTGCCCCCCCTCTTT
TCCCCCCATCTTGCCCCATCCCGTTCAGGTGGGCGCTAGGCATCCTCACC
TACGAGATGCTCGTGGGCAGCCTGCCGTGGCCCGTCCAGGAGCTGAGCAC
TGCTGCTGAAGGCCGCAGCGACTTCGACCCCCCGCTCCCCCCCCTGCAGC
ACGACACCCCTAACGCCGAGCCAGATTACGAGCTGAAGGTGCCGCAGTAC
CTGTCGCGGGGGGCTAGGGACCTGGTGGCAGCGCTCCTCGAGCCGAACGC
GACGCTGCGGCTGGGGGCGTGGGGGTCGCGGGAAGTGCGCGCGCACGCCT
TCTTTGCAGGTCAGTTTCGTCGCTTGTAACTGCCGGTCTCTTCATGCTAT
GAAGTAGTGCACCGCGCGCACCTGCCATGCGGGTTTGCTCCGATGCGTGT
GCCGCGTCTGCAAGCCGCGGTGCGCCGTGCGCGGCTGTCGCGCCGTGGCG
GTCGGCGGCAGTCGCACGCGTGCGCGCATGACCCCAGCAGCAGCAGCAGC
AGCAGACGCACCGCGCCACGTGCACGCATTCGTGTGCAGGAACCATGCGC
GTCCGCATATGACACATCTGAACGCGCTAACTGTCGCCGCTGCCCCCCCC
TCCCCCCCCAAACACACCCAGGCATGGACTGGCAGCGGCTCGCGCGCAGG
CAGGTGCGCAGCCCGTTCAACCCTCTCGCCGCGCGCGCCGCCGCCGCTGC
TGCCAGCGCCGCCGCCGCCATCCCGCCCATCCTCGCGCCTGCGCTCGCCC
CCGCTCAAACGTGGAACTGGCCGCCCAGCGGCAGCGGCGGCGGCGGCGGC
GGGTTTGGCAATGGCTTCGGCGGCTTTAGCGGCACTGGCGGTTTCACGTG
GAGCAGCAGCGGCGGCAGCGGCGACGGCGGCGGCGGCGCGCTGAGCACGG
GCAGCGTGAGCAGCACGCTCAGCCTGATGAGCGCGTGTGCGAGTCCGTGC
GGCGGCGGCAGCGGCGGCGCTGCCATCGGCGTTGGCGTGTGGGGGTGGTG
A
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Coding sequence (CDS) from alignment at Contig_9:859548..863248-

>mRNA_3581 ID=mRNA_3581|Name=jgi.p|Trimin1|159542|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1263bp|location=Sequence derived from alignment at Contig_9:859548..863248- (Tribonema minus UTEX_B_3156 )
ATGGAAGCGGCAGAGGTTATCAGCAGGAGCGCGAGCCGCGTCCTTTGGAG
TCTTAACGCTATCCCTCGTCGCGTTGCGCCTCAACGCAACTTGAATGCTC
TCATCAGCTCCAAACGCGTCAATACCCCAGGCGCGGCAGCCAAGGTGTAC
CTGAACCCCACCTCCATGGAGGCCGTGAAGGTCGTCAGCAGGGGCAGCGC
GTGCGCTGTCGCGAACGTGGAGCGCGAGCGGCGCATCCTGCGCGCCACCG
CGCACCCGTACGTGGTGCAGCTCATCCGCGGCTACGCGACGCAGCGCAGG
GTGTACCTGTGCCTGAAGCACGCGCCGGGCGGCGACCTGTTCGGCGTGCT
GCGGGACCTGGGGTCGCTGCCGGAGAGGCTGGTGAAGCTGTACGTCGCGG
AGCTGGCGGCGGCGCTGTCGCACGTGCACAAGCTCGGCTACGCGCACCGC
GACGTCAAGCCAGAAAACGTCCTCATCGACGGCGACGGCCACGTGAAGCT
GTGCGACTTTGGCCTGAGCAAGCGCGCCGGCGACGGTCTGCGCGGCCTGC
ACACGCTGTGCGGCACCGCGCCGTACGCGGCGCCGGAGATTCGCCGCTGC
GGCGGCGGCGGCGGCAGCGGCGGCGCCGCGGCGGCGTGGGGCTGCGGCTA
CGGCACCGCCGTGGACTGGTGGGCGCTAGGCATCCTCACCTACGAGATGC
TCGTGGGCAGCCTGCCGTGGCCCCACGACACCCCTAACGCCGAGCCAGAT
TACGAGCTGAAGGTGCCGCAGTACCTGTCGCGGGGGGCTAGGGACCTGGT
GGCAGCGCTCCTCGAGCCGAACGCGACGCTGCGGCTGGGGGCGTGGGGGT
CGCGGGAAGTGCGCGCGCACGCCTTCTTTGCAGGCATGGACTGGCAGCGG
CTCGCGCGCAGGCAGGTGCGCAGCCCGTTCAACCCTCTCGCCGCGCGCGC
CGCCGCCGCTGCTGCCAGCGCCGCCGCCGCCATCCCGCCCATCCTCGCGC
CTGCGCTCGCCCCCGCTCAAACGTGGAACTGGCCGCCCAGCGGCAGCGGC
GGCGGCGGCGGCGGGTTTGGCAATGGCTTCGGCGGCTTTAGCGGCACTGG
CGGTTTCACGTGGAGCAGCAGCGGCGGCAGCGGCGACGGCGGCGGCGGCG
CGCTGAGCACGGGCAGCGTGAGCAGCACGCTCAGCCTGATGAGCGCGTGT
GCGAGTCCGTGCGGCGGCGGCAGCGGCGGCGCTGCCATCGGCGTTGGCGT
GTGGGGGTGGTGA
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