mRNA_3575 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|159552
Unique Name	mRNA_3575
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|159552 vs. uniprot
Match: A0A836C780_9STRA (HPP family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C780_9STRA)

HSP 1 Score: 314 bits (804), Expect = 2.090e-108
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1

Query:    1 MSATGLPHINSFRRSLLRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHILSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPPGGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSYPQYWF 465
            MSATGLPHINSFRRSLLRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHILSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPPGGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSYPQYWF
Sbjct:    1 MSATGLPHINSFRRSLLRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHILSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPPGGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSYPQYWF 155

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BLAST of jgi.p|Trimin1|159552 vs. uniprot
Match: A0A7C9IIT3_9DELT (HPP family protein n=1 Tax=Solidesulfovibrio aerotolerans TaxID=295255 RepID=A0A7C9IIT3_9DELT)

HSP 1 Score: 159 bits (403), Expect = 5.000e-47
Identity = 80/138 (57.97%), Postives = 98/138 (71.01%), Query Frame = 1

Query:   49 LRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHILSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPPGGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSYPQYW 462
            L + +GSFGA+AVLLY AP SPL QPRNL+GGH+LSA+VGVTVR+ I             WL C+LAV+++I +M  T TLHPPGGATALIA  G P I  +GY++VL P  SGAL+MLLV +V  N  P R YP+YW
Sbjct:   49 LSMLIGSFGASAVLLYGAPKSPLAQPRNLIGGHVLSALVGVTVRLAIASP---------DWLACSLAVALAIAVMHATGTLHPPGGATALIAVTGGPKILALGYLYVLFPVLSGALIMLLVAVVAVNAAPNRRYPEYW 177

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BLAST of jgi.p|Trimin1|159552 vs. uniprot
Match: A0A7C5EN78_9DELT (HPP family protein n=1 Tax=Desulfobacca acetoxidans TaxID=60893 RepID=A0A7C5EN78_9DELT)

HSP 1 Score: 159 bits (402), Expect = 7.530e-47
Identity = 79/142 (55.63%), Postives = 102/142 (71.83%), Query Frame = 1

Query:   37 RRSLLRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHILSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPPGGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSYPQYW 462
            +R LL + +GSFGA+AVL+Y A  SPL QPRNL+GGHI+SA++GV+   L+           C WL  ALAVS+SI +M  T TLHPPGGATALIA +G P +  +GY++VL+P  +GAL+ML V LV+NNL P R YP+YW
Sbjct:   48 KRDLL-LLIGSFGASAVLIYGATKSPLAQPRNLIGGHIISALIGVSAWKLLHP---------CPWLAAALAVSVSIAVMHLTKTLHPPGGATALIAVIGGPKVHQLGYLYVLMPVMAGALIMLAVALVVNNLAPTRRYPEYW 179

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BLAST of jgi.p|Trimin1|159552 vs. uniprot
Match: UPI00196498E7 (HPP family protein n=1 Tax=Desulfobulbus rhabdoformis TaxID=34032 RepID=UPI00196498E7)

HSP 1 Score: 158 bits (400), Expect = 1.420e-46
Identity = 79/155 (50.97%), Postives = 103/155 (66.45%), Query Frame = 1

Query:    1 MSATGLPHINSFRRSLLRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHILSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPPGGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSYPQYWF 465
            +SA    H N   +S L + +GSFGA+AVL+Y A  SPL QPRNLLGGHI+SA++GV      T QL         WL  ALAV+ +I +ML T TLHPPGGATALIA +GS  +  +GY++ ++P   GA +ML+V L++NNL   R YP+YWF
Sbjct:   33 ISAVSFSHFNLLAQSDLVMIIGSFGASAVLIYGAIKSPLAQPRNLLGGHIISAVIGVFCYQTFTNQL---------WLAAALAVATAIAVMLVTRTLHPPGGATALIAVIGSAKVHALGYLYAIIPVGLGATIMLVVALLVNNLSSKRQYPEYWF 178

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BLAST of jgi.p|Trimin1|159552 vs. uniprot
Match: A0A3B1BZ16_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1BZ16_9ZZZZ)

HSP 1 Score: 158 bits (400), Expect = 1.610e-46
Identity = 77/139 (55.40%), Postives = 99/139 (71.22%), Query Frame = 1

Query:   49 LRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHILSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPPGGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSYPQYWF 465
            + + +GSFGA+AVLLYAA  SPL QPRN LGGHI+SA++GV          C        W+  +LAVS+SI IML TDT+HPPGGATALIA +GSP + D+GY++ +VP   GA +++LV LV+NNL   RSYPQ+WF
Sbjct:   53 MTLIIGSFGASAVLLYAAIRSPLAQPRNCLGGHIISAMIGV---------FCYKMFGAAPWMAASLAVSVSIAIMLITDTVHPPGGATALIAVIGSPTVHDLGYLYAVVPVGLGASILVLVALVVNNLSSDRSYPQFWF 182

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BLAST of jgi.p|Trimin1|159552 vs. uniprot
Match: UPI0004915D29 (HPP family protein n=1 Tax=Desulfogranum japonicum TaxID=231447 RepID=UPI0004915D29)

HSP 1 Score: 157 bits (397), Expect = 4.060e-46
Identity = 80/155 (51.61%), Postives = 104/155 (67.10%), Query Frame = 1

Query:    1 MSATGLPHINSFRRSLLRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHILSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPPGGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSYPQYWF 465
            +SA    H N   +S + + +GSFGA+AVL+Y A  SPL QPRNLLGGHILSA +GV      + QL         WL  ALAV+ +I +ML T TLHPPGGATALIA +GS  +  +GY++VLVP   GA++ML+V L++NNL   R YP++WF
Sbjct:   33 ISAVAYSHFNLLAQSDMVMIIGSFGASAVLIYGAIKSPLAQPRNLLGGHILSAFIGVFCYQNFSSQL---------WLAAALAVATAIAVMLVTRTLHPPGGATALIAVIGSSKVHALGYLYVLVPVGLGAIIMLIVALLVNNLSSKRQYPEFWF 178

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BLAST of jgi.p|Trimin1|159552 vs. uniprot
Match: C4XMG0_SOLM1 (Hypothetical membrane protein n=4 Tax=Solidesulfovibrio TaxID=2910984 RepID=C4XMG0_SOLM1)

HSP 1 Score: 157 bits (397), Expect = 4.440e-46
Identity = 79/139 (56.83%), Postives = 97/139 (69.78%), Query Frame = 1

Query:   49 LRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHILSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPPGGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSYPQYWF 465
            L + +GSFGA+AVLLY AP SPL QPRNL+GGH+LSA+VGVTVR+ I             WL CA+AV+ +I +M  T TLHPPGGATALIA  G P +  +GY++ L+P  SGAL+ML V LV  N  P R YPQYW+
Sbjct:   52 LSLLIGSFGASAVLLYGAPASPLAQPRNLIGGHVLSALVGVTVRLAIASP---------DWLACAVAVAAAIALMHATGTLHPPGGATALIAVTGGPKLLALGYLYALIPVLSGALVMLAVALVAVNAVPSRRYPQYWW 181

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BLAST of jgi.p|Trimin1|159552 vs. uniprot
Match: A0A062V194_9EURY (CBS-domain-containing membrane protein n=1 Tax=Candidatus Methanoperedens nitroreducens TaxID=1392998 RepID=A0A062V194_9EURY)

HSP 1 Score: 157 bits (396), Expect = 5.750e-46
Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = 1

Query:    1 MSATGLPHINSFRRSLLRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHILSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPPGGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSYPQYWF 465
            + A      N F    L + +GSFGA+AVL++AA  SPL QPRNL+GGH+LSAI+GV+   ++ +           W+  A AVS +I +MLFTDTLHPPGGATALIA +GS  I ++GY++V VP  +GAL+ML++ L++NNL   R YP+YW+
Sbjct:   34 IGAVAFLSFNFFESGDLTLIIGSFGASAVLIFAAIRSPLAQPRNLIGGHVLSAIIGVSAYQMMGDT----------WMASAFAVSSAIAVMLFTDTLHPPGGATALIAVIGSEEIHNIGYLYVFVPTLAGALIMLVIALLVNNLAEGRKYPEYWY 178

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BLAST of jgi.p|Trimin1|159552 vs. uniprot
Match: I2Q5Z9_9DELT (CBS-domain-containing membrane protein n=2 Tax=Desulfovibrionaceae TaxID=194924 RepID=I2Q5Z9_9DELT)

HSP 1 Score: 157 bits (396), Expect = 5.750e-46
Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = 1

Query:   49 LRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHILSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPPGGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSYPQYW 462
            L + +GSFGA+AVLLY AP SPL QPRNLLGGH++SA+ GVTVR+ +             WL CALAV+ +I +M  T TLHPPGGATALIA  G P +  +GY++ LVPA SGA +ML+V L+ NNL P R YP+YW
Sbjct:   49 LSMLIGSFGASAVLLYGAPKSPLAQPRNLLGGHVVSALFGVTVRLAVPGP---------AWLVCALAVAGAIALMHATKTLHPPGGATALIAVTGGPKLAALGYLYALVPALSGAAVMLVVALLANNLAPGRRYPEYW 177

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BLAST of jgi.p|Trimin1|159552 vs. uniprot
Match: UPI001FACD7B3 (HPP family protein n=1 Tax=Fundidesulfovibrio sp. SG106 TaxID=2922717 RepID=UPI001FACD7B3)

HSP 1 Score: 157 bits (396), Expect = 5.930e-46
Identity = 76/138 (55.07%), Postives = 98/138 (71.01%), Query Frame = 1

Query:   49 LRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHILSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPPGGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSYPQYW 462
            L + +GSFGA++VLLYAAP SPL QPRNLLGGH+LSA+VGV VR+ +             WL CALAV+ +I +M  T TLHPPGGATA IA  G P I  +G+ + L+PA +GAL++L V L++NNL  +R YP+YW
Sbjct:   50 LTLLIGSFGASSVLLYAAPRSPLAQPRNLLGGHVLSALVGVAVRLCLPGP---------TWLACALAVACAIALMQVTGTLHPPGGATAFIAVAGGPKIAALGFTYALIPAGAGALVLLAVALLVNNLAEHRRYPEYW 178

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|159552 vs. uniprot

BLAST of jgi.p|Trimin1|159552 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836C780_9STRA	2.090e-108	100.00	HPP family protein n=1 Tax=Tribonema minus TaxID=3...	[more]
A0A7C9IIT3_9DELT	5.000e-47	57.97	HPP family protein n=1 Tax=Solidesulfovibrio aerot...	[more]
A0A7C5EN78_9DELT	7.530e-47	55.63	HPP family protein n=1 Tax=Desulfobacca acetoxidan...	[more]
UPI00196498E7	1.420e-46	50.97	HPP family protein n=1 Tax=Desulfobulbus rhabdofor...	[more]
A0A3B1BZ16_9ZZZZ	1.610e-46	55.40	Uncharacterized protein n=1 Tax=hydrothermal vent ...	[more]
UPI0004915D29	4.060e-46	51.61	HPP family protein n=1 Tax=Desulfogranum japonicum...	[more]
C4XMG0_SOLM1	4.440e-46	56.83	Hypothetical membrane protein n=4 Tax=Solidesulfov...	[more]
A0A062V194_9EURY	5.750e-46	49.68	CBS-domain-containing membrane protein n=1 Tax=Can...	[more]
I2Q5Z9_9DELT	5.750e-46	57.25	CBS-domain-containing membrane protein n=2 Tax=Des...	[more]
UPI001FACD7B3	5.930e-46	55.07	HPP family protein n=1 Tax=Fundidesulfovibrio sp. ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_9	contig	Contig_9:822124..823151 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|159552\|e_gw1.9.146.1
BRITE	ko00000
KEGG ko	ko:K07168
Description	HPP family
COG category	T
Max annot lvl	28221\|Deltaproteobacteria
EggNOG OGs	COG3448@1\|root,COG3448@2\|Bacteria,1MXJG@1224\|Proteobacteria,42RSQ@68525\|delta/epsilon subdivisions,2WNED@28221\|Deltaproteobacteria,2MBBZ@213115\|Desulfovibrionales
Evalue	8.74e-50
Seed ortholog	1304872.JAGC01000009_gene248
Hectar predicted targeting category	mitochondrion
TranscriptId	159874
Track	FilteredModels1
ProteinId	159552

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|159552	gene_3575	Tribonema minus UTEX_B_3156	gene	Contig_9 822124..823151 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3575_1	exon_3575_1	Tribonema minus UTEX_B_3156	exon	Contig_9 822124..822424 +
exon_3575_2	exon_3575_2	Tribonema minus UTEX_B_3156	exon	Contig_9 822985..823151 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3575	CDS_3575	Tribonema minus UTEX_B_3156	CDS	Contig_9 822124..822424 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|159552	Trimin1\|159552\|e_gw1.9.146.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_9 822124..823151 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_9:822124..823151+
coding sequence from alignment at Contig_9:822124..823151+

spliced messenger RNA

>mRNA_3575 ID=mRNA_3575|Name=jgi.p|Trimin1|159552|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_9:822124..823151+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCAACGGGCCTGCCGCACATTAACAGCTTCCGCCGCTCGTTGCT
CCGCGTTTGCGTAGGCTCGTTCGGCGCCACGGCGGTGCTCCTCTACGCAG
CGCCCATGAGCCCGCTCACGCAGCCGCGCAACCTGCTCGGCGGCCACATC
CTGTCGGCGATAGTGGGCGTCACGGTGCGCATCCTCATCACCGAGCAGCT
CTGCGGCGCGCACGGCGCGGACTGCCGCTGGCTCGGCTGCGCGCTCGCCG
TGTCCATCTCGATCCTCATCATGCTCTTCACCGACACACTGCACCCGCCT
GGCGGCGCCACCGCGCTCATCGCCGCCATGGGCAGCCCCGTGATCGACGA
CATGGGCTACATGTTCGTGCTCGTCCCTGCGGCCTCCGGCGCGCTGCTGA
TGCTCCTCGTGTGCCTCGTCATCAACAACCTGGACCCGTACCGATCGTAC
CCGCAGTACTGGTTCTAG

protein sequence of jgi.p|Trimin1|159552

>Trimin1|159552|e_gw1.9.146.1 ID=Trimin1|159552|e_gw1.9.146.1|Name=jgi.p|Trimin1|159552|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp
MSATGLPHINSFRRSLLRVCVGSFGATAVLLYAAPMSPLTQPRNLLGGHI
LSAIVGVTVRILITEQLCGAHGADCRWLGCALAVSISILIMLFTDTLHPP
GGATALIAAMGSPVIDDMGYMFVLVPAASGALLMLLVCLVINNLDPYRSY
PQYWF*

mRNA from alignment at Contig_9:822124..823151+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3575 ID=mRNA_3575|Name=jgi.p|Trimin1|159552|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1028bp|location=Sequence derived from alignment at Contig_9:822124..823151+ (Tribonema minus UTEX_B_3156 )
ATGTCGGCAACGGGCCTGCCGCACATTAACAGCTTCCGCCGCTCGTTGCT
CCGCGTTTGCGTAGGCTCGTTCGGCGCCACGGCGGTGCTCCTCTACGCAG
CGCCCATGAGCCCGCTCACGCAGCCGCGCAACCTGCTCGGCGGCCACATC
CTGTCGGCGATAGTGGGCGTCACGGTGCGCATCCTCATCACCGAGCAGCT
CTGCGGCGCGCACGGCGCGGACTGCCGCTGGCTCGGCTGCGCGCTCGCCG
TGTCCATCTCGATCCTCATCATGCTCTTCACCGACACACTGCACCCGCCT
GGTGAGTAGGGACAACTTCAAGTATGTTCTTCATGAGGACTTCAAGTTGC
TTGCCGTGTCCATCTCCATCCTCATCATGCTCTTCACCGGCCATGCTGCA
CCTGCCGGGTGAGTGACAACTTCAAGTGTGTACTTCAACTCAAATATGCT
CCACTGACCTGATGCACCCGCTGGGTGAGCGGCAACAAGTGGGTACTTCA
AGTTGATGCTGCCCGCCTGTTCGCCGTCTCTATCCTCTTCATGCTCTTCA
CCGACATGTTGCACCCGCCTGTGAGTAGTGGCAACTTCAAGTGTGTACGT
CAAGTGGGCTTGTTCGTGCAAAGTGTGTACTTCAAGTGGCCTTGTTGGTG
CAGTGTCATCACCAACTTCAACACCATAGCATTGTGCGGTTTAAATTTGT
CACTTGATCACATCACCCTGGTGTTGTACCCTCACTCATCAATATTGTCG
CCACTTTCCTGCTTGTTGTTACTCACTGACATCGTCGGCCATTTTCCCAC
TCGCTGTAACTCGCCCCACTGACATCGCCGCCACTCCCGTACATACCTAC
CCTCTCCGCAGGCGGCGCCACCGCGCTCATCGCCGCCATGGGCAGCCCCG
TGATCGACGACATGGGCTACATGTTCGTGCTCGTCCCTGCGGCCTCCGGC
GCGCTGCTGATGCTCCTCGTGTGCCTCGTCATCAACAACCTGGACCCGTA
CCGATCGTACCCGCAGTACTGGTTCTAG

Coding sequence (CDS) from alignment at Contig_9:822124..823151+

>mRNA_3575 ID=mRNA_3575|Name=jgi.p|Trimin1|159552|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=468bp|location=Sequence derived from alignment at Contig_9:822124..823151+ (Tribonema minus UTEX_B_3156 )
ATGTCGGCAACGGGCCTGCCGCACATTAACAGCTTCCGCCGCTCGTTGCT
CCGCGTTTGCGTAGGCTCGTTCGGCGCCACGGCGGTGCTCCTCTACGCAG
CGCCCATGAGCCCGCTCACGCAGCCGCGCAACCTGCTCGGCGGCCACATC
CTGTCGGCGATAGTGGGCGTCACGGTGCGCATCCTCATCACCGAGCAGCT
CTGCGGCGCGCACGGCGCGGACTGCCGCTGGCTCGGCTGCGCGCTCGCCG
TGTCCATCTCGATCCTCATCATGCTCTTCACCGACACACTGCACCCGCCT
GGCGGCGCCACCGCGCTCATCGCCGCCATGGGCAGCCCCGTGATCGACGA
CATGGGCTACATGTTCGTGCTCGTCCCTGCGGCCTCCGGCGCGCTGCTGA
TGCTCCTCGTGTGCCTCGTCATCAACAACCTGGACCCGTACCGATCGTAC
CCGCAGTACTGGTTCTAG