mRNA_3544 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347200
Unique NamemRNA_3544
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347200 vs. uniprot
Match: A0A836C7J9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7J9_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.520e-57
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 MREISAALLLVVMLATAPKVVVAAGESAGTDRFSPEGLRLEARKRNLKAALRYDPVTMADKIDVVDQXXXXXXXXXDEMCMLQMIHMGATGLMLLSMAFDMYVKQMGK 324
            MREISAALLLVVMLATAPKVVVAAGESAGTDRFSPEGLRLEARKRNLKAALRYDPVTMADKIDVVDQXXXXXXXXXDEMCMLQMIHMGATGLMLLSMAFDMYVKQMGK
Sbjct:    1 MREISAALLLVVMLATAPKVVVAAGESAGTDRFSPEGLRLEARKRNLKAALRYDPVTMADKIDVVDQXXXXXXXXXDEMCMLQMIHMGATGLMLLSMAFDMYVKQMGK 108
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347200 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C7J9_9STRA1.520e-57100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:434727..435953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347200|estExt_Genemark1.C_Ctg_90048
Hectar predicted targeting categorysignal peptide
TranscriptId347522
TrackFilteredModels1
ProteinId347200
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347200gene_3544Tribonema minus UTEX_B_3156 geneContig_9 434727..435953 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3544_3exon_3544_3Tribonema minus UTEX_B_3156 exonContig_9 434727..435071 -
exon_3544_2exon_3544_2Tribonema minus UTEX_B_3156 exonContig_9 435661..435683 -
exon_3544_1exon_3544_1Tribonema minus UTEX_B_3156 exonContig_9 435904..435953 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3544UTR3_3544Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 434727..434817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3544CDS_3544Tribonema minus UTEX_B_3156 CDSContig_9 435904..435953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347200Trimin1|347200|estExt_Genemark1.C_Ctg_90048Tribonema minus UTEX_B_3156 polypeptideContig_9 434818..435953 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3544 ID=mRNA_3544|Name=jgi.p|Trimin1|347200|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=418bp|location=Sequence derived from alignment at Contig_9:434727..435953- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGAGATTTCTGCTGCGCTACTGCTAGTGGTGATGCTGGCGACGGC
CCCCAAGGTGGTTGTGGCTGCAGGTGAATCGGCGGGCACGGACCGCTTTT
CGCCAGAAGGCCTCAGGCTGGAGGCACGCAAGCGCAACCTCAAGGCTGCG
CTGCGGTACGACCCCGTCACAATGGCGGACAAGATTGATGTGGTGGACCA
GAAGGTCGATGTGCTGGATAAGAAGATGGACGAGATGTGTATGCTGCAGA
TGATCCACATGGGCGCCACAGGTCTGATGCTTTTAAGCATGGCCTTCGAC
ATGTACGTGAAGCAGATGGGCAAGTGAGATTGAGTGCCGGCGACACAAAT
CACTCGCGGTGCGTGTATACTTGTGTTGTGTATGGGCCTGCATGTATAAA
ACTGCCACTATTTTCCCA
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protein sequence of jgi.p|Trimin1|347200

>Trimin1|347200|estExt_Genemark1.C_Ctg_90048 ID=Trimin1|347200|estExt_Genemark1.C_Ctg_90048|Name=jgi.p|Trimin1|347200|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=109bp
MREISAALLLVVMLATAPKVVVAAGESAGTDRFSPEGLRLEARKRNLKAA
LRYDPVTMADKIDVVDQKVDVLDKKMDEMCMLQMIHMGATGLMLLSMAFD
MYVKQMGK*
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mRNA from alignment at Contig_9:434727..435953-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3544 ID=mRNA_3544|Name=jgi.p|Trimin1|347200|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1227bp|location=Sequence derived from alignment at Contig_9:434727..435953- (Tribonema minus UTEX_B_3156 )
ATGCGGGAGATTTCTGCTGCGCTACTGCTAGTGGTGATGCTGGCGACGGC
GTCGGCATTCGTGCCCATAAGCAGGCCTCCACCTCACCTGCGAAGCCGGC
GGTGAATATGCTCATGATCGGCTGCTGTTGAATGTGCTGTCGATTTCGGC
TTGGTGTCCTTCAAGAGGTAATTTTCTAGTTCTGCTACGTCACGATTCGA
GTAGACCTTGTCGTCATCACCCTGTACTTCATGACCAGCGAGTCGAAGGT
GCGGTCGCACACCTGCGCAGCCCCAAGGTGGTTGTGGCTGCAGGTGCGTT
TCATAACTGCGTGAGAACAGCTCGTCGTGCATTGGTGTTGAAAGCAACTG
CTACTGACGTTTGTTTGATGTAGCGAGGACCCCTCAATGGCAGTTTGCAA
CACGGAGTCTGCGTAAACGTTACAGCAGCTCTGCAACTTGGGCACCTCAC
ACACCCAACCCTTTTGCAATGTTTGCATGAGCAAGCGGCAAATGCCAGAG
TCGGTGGGATCATCACCAGAGTAGTTTCATGGCAGTTGATTGTAAGAATT
AACGAAGCACAAAGGGGCGAGCTTGCGGCGTGCGCCGTCGCCGCCGCAGC
CGCCGCCGCAGCGCTGCGGCGACTGCAGGGCGAAGTGTTGTGCACCATGT
GCCCTAAACAGTAATCCAAGGCCCTGTGCTGCGCGCAGTGTAGATCCTCT
GTTGGCTATTGGGCGGCATTGGCCGTGCATCATCTGCCACTGGCAGCAGG
TGAAAATCAGAGACGTCTAGCATCTAATGGAAGGCGCTTGCGGCTAACCA
TCCCTTGTCACCTAGAGCTCAACGATCTTTTTGATTCGTTTTTCATCTAA
TCCCTTGTCTCTTGGCTCTCTGTTCCATACAGGTGAATCGGCGGGCACGG
ACCGCTTTTCGCCAGAAGGCCTCAGGCTGGAGGCACGCAAGCGCAACCTC
AAGGCTGCGCTGCGGTACGACCCCGTCACAATGGCGGACAAGATTGATGT
GGTGGACCAGAAGGTCGATGTGCTGGATAAGAAGATGGACGAGATGTGTA
TGCTGCAGATGATCCACATGGGCGCCACAGGTCTGATGCTTTTAAGCATG
GCCTTCGACATGTACGTGAAGCAGATGGGCAAGTGAGATTGAGTGCCGGC
GACACAAATCACTCGCGGTGCGTGTATACTTGTGTTGTGTATGGGCCTGC
ATGTATAAAACTGCCACTATTTTCCCA
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Coding sequence (CDS) from alignment at Contig_9:434727..435953-

>mRNA_3544 ID=mRNA_3544|Name=jgi.p|Trimin1|347200|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=327bp|location=Sequence derived from alignment at Contig_9:434727..435953- (Tribonema minus UTEX_B_3156 )
ATGCGGGAGATTTCTGCTGCGCTACTGCTAGTGGTGATGCTGGCGACGGC
CCCCAAGGTGGTTGTGGCTGCAGGTGAATCGGCGGGCACGGACCGCTTTT
CGCCAGAAGGCCTCAGGCTGGAGGCACGCAAGCGCAACCTCAAGGCTGCG
CTGCGGTACGACCCCGTCACAATGGCGGACAAGATTGATGTGGTGGACCA
GAAGGTCGATGTGCTGGATAAGAAGATGGACGAGATGTGTATGCTGCAGA
TGATCCACATGGGCGCCACAGGTCTGATGCTTTTAAGCATGGCCTTCGAC
ATGTACGTGAAGCAGATGGGCAAGTGA
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