mRNA_3540 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|337728
Unique NamemRNA_3540
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|337728 vs. uniprot
Match: A0A835YL45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL45_9STRA)

HSP 1 Score: 244 bits (622), Expect = 4.100e-79
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1 
Query:    1 MARMRSYPIAPDAQHAPAACPALPPYKSPALTGGAGAARGXXXXXXXXXXXXXXXGTRXXXXXXXXXXXXXXXXXXAYTQRAAGARPAXXXXXXXAPRVAAPAPLYLAPERGAIETSASQLMAWLAAKGGASGTGAARGAAXXXXXXXXXXXXXXXXXXXYGGTHRAFGVRKRGASPNNTDGGSPRSLKRQRGSGGGGGSTGAL 612
            MARMRSYPIAPDAQHAPAACPALPPYKSPALTGGAGAARGXXXXXXXXXXXXXXXGTRXXXXXXXXXXXXXXXXXXAYTQRAAGARPAXXXXXXXAPRVAAPAPLYLAPERGAIETSASQLMAWLAAKGGASGTGAARGAAXXXXXXXXXXXXXXXXXXXYGGTHRAFGVRKRGASPNNTDGGSPRSLKRQRGSGGGGGSTGAL
Sbjct:    1 MARMRSYPIAPDAQHAPAACPALPPYKSPALTGGAGAARGXXXXXXXXXXXXXXXGTRXXXXXXXXXXXXXXXXXXAYTQRAAGARPAXXXXXXXAPRVAAPAPLYLAPERGAIETSASQLMAWLAAKGGASGTGAARGAAXXXXXXXXXXXXXXXXXXXYGGTHRAFGVRKRGASPNNTDGGSPRSLKRQRGSGGGGGSTGAL 204
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|337728 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YL45_9STRA4.100e-79100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:383280..383955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|337728|MIX46491_4_21
Hectar predicted targeting categoryother localisation
TranscriptId338050
TrackFilteredModels1
ProteinId337728
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|337728gene_3540Tribonema minus UTEX_B_3156 geneContig_9 383280..383955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|337728Trimin1|337728|MIX46491_4_21Tribonema minus UTEX_B_3156 polypeptideContig_9 383280..383955 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3540_2exon_3540_2Tribonema minus UTEX_B_3156 exonContig_9 383280..383877 -
exon_3540_1exon_3540_1Tribonema minus UTEX_B_3156 exonContig_9 383939..383955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3540CDS_3540Tribonema minus UTEX_B_3156 CDSContig_9 383939..383955 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3540 ID=mRNA_3540|Name=jgi.p|Trimin1|337728|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=615bp|location=Sequence derived from alignment at Contig_9:383280..383955- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGCATGAGAAGCTACCCGATCGCGCCCGACGCACAGCACGCCCC
TGCCGCATGCCCGGCCTTGCCCCCCTACAAGAGCCCAGCCCTGACGGGCG
GCGCGGGCGCGGCGCGCGGCGGCTACGGCGGCGGCAGCAGCGGCGGCGGC
TGGCACAGCACCACAGGCACGCGTGGCGCCTCAGGCGCGGGCACGGGCGC
TGCCGCCGCCGCCGCTGCGGGCGGCGGGGCCTACACGCAGCGCGCAGCTG
GCGCGCGCCCGGCAGGGGTGGCGGCGGCGGCGGCGGCGCCGCGCGTGGCA
GCGCCTGCGCCACTGTACCTCGCCCCCGAGCGCGGTGCAATCGAGACCTC
AGCGTCCCAATTGATGGCATGGCTGGCAGCGAAGGGCGGCGCCTCGGGCA
CGGGCGCGGCGCGCGGCGCCGCTGGCGGCGGCAGCAGCGGCGCGGGCGCG
GCGGCACCGCGGGGGGTGGGGGCGAGCAGCTACGGCGGCACGCACAGAGC
GTTTGGCGTGCGCAAGCGCGGCGCCAGTCCCAACAACACCGACGGCGGCT
CGCCCAGGTCGCTCAAGCGCCAGCGCGGCAGCGGCGGCGGTGGTGGGTCC
ACGGGTGCCCTGTGA
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protein sequence of jgi.p|Trimin1|337728

>Trimin1|337728|MIX46491_4_21 ID=Trimin1|337728|MIX46491_4_21|Name=jgi.p|Trimin1|337728|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=205bp
MARMRSYPIAPDAQHAPAACPALPPYKSPALTGGAGAARGGYGGGSSGGG
WHSTTGTRGASGAGTGAAAAAAAGGGAYTQRAAGARPAGVAAAAAAPRVA
APAPLYLAPERGAIETSASQLMAWLAAKGGASGTGAARGAAGGGSSGAGA
AAPRGVGASSYGGTHRAFGVRKRGASPNNTDGGSPRSLKRQRGSGGGGGS
TGAL*
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mRNA from alignment at Contig_9:383280..383955-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3540 ID=mRNA_3540|Name=jgi.p|Trimin1|337728|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=676bp|location=Sequence derived from alignment at Contig_9:383280..383955- (Tribonema minus UTEX_B_3156 )
ATGGCACGCATGAGAAGGTGCACGCATGAAAACCGAACCAACTGAGCCTC
ATGTGAGCCATCTTCATTCACCGTGAAGCTACCCGATCGCGCCCGACGCA
CAGCACGCCCCTGCCGCATGCCCGGCCTTGCCCCCCTACAAGAGCCCAGC
CCTGACGGGCGGCGCGGGCGCGGCGCGCGGCGGCTACGGCGGCGGCAGCA
GCGGCGGCGGCTGGCACAGCACCACAGGCACGCGTGGCGCCTCAGGCGCG
GGCACGGGCGCTGCCGCCGCCGCCGCTGCGGGCGGCGGGGCCTACACGCA
GCGCGCAGCTGGCGCGCGCCCGGCAGGGGTGGCGGCGGCGGCGGCGGCGC
CGCGCGTGGCAGCGCCTGCGCCACTGTACCTCGCCCCCGAGCGCGGTGCA
ATCGAGACCTCAGCGTCCCAATTGATGGCATGGCTGGCAGCGAAGGGCGG
CGCCTCGGGCACGGGCGCGGCGCGCGGCGCCGCTGGCGGCGGCAGCAGCG
GCGCGGGCGCGGCGGCACCGCGGGGGGTGGGGGCGAGCAGCTACGGCGGC
ACGCACAGAGCGTTTGGCGTGCGCAAGCGCGGCGCCAGTCCCAACAACAC
CGACGGCGGCTCGCCCAGGTCGCTCAAGCGCCAGCGCGGCAGCGGCGGCG
GTGGTGGGTCCACGGGTGCCCTGTGA
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Coding sequence (CDS) from alignment at Contig_9:383280..383955-

>mRNA_3540 ID=mRNA_3540|Name=jgi.p|Trimin1|337728|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=615bp|location=Sequence derived from alignment at Contig_9:383280..383955- (Tribonema minus UTEX_B_3156 )
ATGGCACGCATGAGAAGCTACCCGATCGCGCCCGACGCACAGCACGCCCC
TGCCGCATGCCCGGCCTTGCCCCCCTACAAGAGCCCAGCCCTGACGGGCG
GCGCGGGCGCGGCGCGCGGCGGCTACGGCGGCGGCAGCAGCGGCGGCGGC
TGGCACAGCACCACAGGCACGCGTGGCGCCTCAGGCGCGGGCACGGGCGC
TGCCGCCGCCGCCGCTGCGGGCGGCGGGGCCTACACGCAGCGCGCAGCTG
GCGCGCGCCCGGCAGGGGTGGCGGCGGCGGCGGCGGCGCCGCGCGTGGCA
GCGCCTGCGCCACTGTACCTCGCCCCCGAGCGCGGTGCAATCGAGACCTC
AGCGTCCCAATTGATGGCATGGCTGGCAGCGAAGGGCGGCGCCTCGGGCA
CGGGCGCGGCGCGCGGCGCCGCTGGCGGCGGCAGCAGCGGCGCGGGCGCG
GCGGCACCGCGGGGGGTGGGGGCGAGCAGCTACGGCGGCACGCACAGAGC
GTTTGGCGTGCGCAAGCGCGGCGCCAGTCCCAACAACACCGACGGCGGCT
CGCCCAGGTCGCTCAAGCGCCAGCGCGGCAGCGGCGGCGGTGGTGGGTCC
ACGGGTGCCCTGTGA
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