mRNA_3534 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347194
Unique NamemRNA_3534
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347194 vs. uniprot
Match: A0A835YHQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ5_9STRA)

HSP 1 Score: 270 bits (689), Expect = 2.380e-89
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 2 
Query:   50 MALFGAMLRPMAQAASSVALRGQKRFAGGLKIHDQNKAHVFGEVPGHHKKEGWETIWYLTLAASAVMLVFGIGQKPVTGIEHWALDEAAARNKVEAKGGTLEYGVIYSNQPAIRFRKTDAGMPEVIDDDEDE 445
            MALFGAMLRPMAQAASSVALRGQKRFAGGLKIHDQNKAHVFGEVPGHHKKEGWETIWYLTLAASAVMLVFGIGQKPVTGIEHWALDEAAARNKVEAKGGTLEYGVIYSNQPAIRFRKTDAGMPEVIDDDEDE
Sbjct:    1 MALFGAMLRPMAQAASSVALRGQKRFAGGLKIHDQNKAHVFGEVPGHHKKEGWETIWYLTLAASAVMLVFGIGQKPVTGIEHWALDEAAARNKVEAKGGTLEYGVIYSNQPAIRFRKTDAGMPEVIDDDEDE 132
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BLAST of jgi.p|Trimin1|347194 vs. uniprot
Match: A0A6T5QHA6_HETAK (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QHA6_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 2.320e-16
Identity = 48/121 (39.67%), Postives = 72/121 (59.50%), Query Frame = 2 
Query:   92 ASSVALR--GQKRFAGGL--KIHDQNKAHVFGEVPGHHKKEGWETIWYLTLAASAVMLVFGIGQKPVTGIEHWALDEAAARNKVEAKGGTLEYGVIYSNQPAIRFRKTDAG-MPEVIDDDE 439
            AS+V  R   ++  AGG   + H Q +A+ FGE P  HK +GWET  Y+  AAS+++LV G+  KP T I+ WA +EAAAR K++  G  +EY   Y+      F   + G +P ++D++E
Sbjct:   15 ASNVTSRIGARRTMAGGPPPRSHGQLEAYAFGEGP-KHKAQGWETGTYICYAASSLLLVLGLANKPNTSIKSWAHEEAAARLKLKEAGEDIEYSTFYNKLAGYVFETDEVGAVPTLVDEEE 134
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347194 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YHQ5_9STRA2.380e-89100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6T5QHA6_HETAK2.320e-1639.67NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:331810..334465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347194|estExt_Genemark1.C_Ctg_90041
DescriptionESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
COG categoryS
Max annot lvl2836|Bacillariophyta
EggNOG OGs2E0B6@1|root,2S7S9@2759|Eukaryota,2XDF8@2836|Bacillariophyta
Evalue7.56e-10
Seed ortholog35128.Thaps1833
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_004975.1
TranscriptId347516
TrackFilteredModels1
ProteinId347194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347194gene_3534Tribonema minus UTEX_B_3156 geneContig_9 331810..334465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347194Trimin1|347194|estExt_Genemark1.C_Ctg_90041Tribonema minus UTEX_B_3156 polypeptideContig_9 332134..334109 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3534_1exon_3534_1Tribonema minus UTEX_B_3156 exonContig_9 331810..331842 +
exon_3534_2exon_3534_2Tribonema minus UTEX_B_3156 exonContig_9 332118..332376 +
exon_3534_3exon_3534_3Tribonema minus UTEX_B_3156 exonContig_9 333954..334465 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3534UTR5_3534Tribonema minus UTEX_B_3156 five_prime_UTRContig_9 331810..331842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3534CDS_3534Tribonema minus UTEX_B_3156 CDSContig_9 332134..332376 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3534UTR3_3534Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 334110..334465 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3534 ID=mRNA_3534|Name=jgi.p|Trimin1|347194|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=804bp|location=Sequence derived from alignment at Contig_9:331810..334465+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGAGAGAGGCGGGGGTTGCGCTGAGAGCGAAGCAGCAACAGCAGCACCA
TGGCGCTGTTCGGCGCGATGCTGCGGCCGATGGCGCAGGCAGCGAGCAGT
GTGGCGTTGCGGGGGCAGAAGCGATTCGCTGGGGGGCTCAAAATTCACGA
CCAGAACAAGGCACATGTCTTTGGGGAAGTGCCAGGGCACCATAAGAAGG
AGGGGTGGGAGACGATCTGGTATCTGACGCTGGCGGCGTCCGCTGTGATG
CTGGTGTTTGGAATAGGGCAGAAACCTGTGACAGGAATAGAGCACTGGGC
CCTCGACGAGGCGGCAGCGCGCAACAAGGTGGAGGCCAAGGGCGGCACGC
TCGAGTACGGCGTCATCTACTCCAATCAGCCCGCGATCCGCTTCCGGAAG
ACGGACGCGGGCATGCCGGAGGTCATTGACGACGACGAGGACGAGTGAGC
AGCAGCGCTCAGTGATTGAGAGCGCGGCCGCCGCGCAGTGCTCAGCAGAT
TTTCGGGGGGCGCTGCGTGGCAGTGCTCGCAGGGCAGCAGCAGCGCTCAG
CGCATGAGAGCGCGGCCGCACAGTGCTCAGCAGATTTTCGGCGGCGCAGA
TTTTTGGGGGCGCCTCGTGGCAGTGCTCGCAGGGCAGCACCAGCGCTCGG
CGCATGAGAGCGCAGCCGCGCAGTGCTGAGCAGCATTGCGGTCGTGACTC
ACGAAGAGATGGCAGTGCTTGCAGTATCTAGGAATTTGAAGTAGTCGGTG
GCCCTGGTGGCACCGCGGGCTAGCACGATAAATGTGTGATTGGTTTTACT
GGTG
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protein sequence of jgi.p|Trimin1|347194

>Trimin1|347194|estExt_Genemark1.C_Ctg_90041 ID=Trimin1|347194|estExt_Genemark1.C_Ctg_90041|Name=jgi.p|Trimin1|347194|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp
MALFGAMLRPMAQAASSVALRGQKRFAGGLKIHDQNKAHVFGEVPGHHKK
EGWETIWYLTLAASAVMLVFGIGQKPVTGIEHWALDEAAARNKVEAKGGT
LEYGVIYSNQPAIRFRKTDAGMPEVIDDDEDE*
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mRNA from alignment at Contig_9:331810..334465+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3534 ID=mRNA_3534|Name=jgi.p|Trimin1|347194|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2656bp|location=Sequence derived from alignment at Contig_9:331810..334465+ (Tribonema minus UTEX_B_3156 )
GGGAGAGAGGCGGGGGTTGCGCTGAGAGCGAAGGTAAGCCTTGCCACCTA
TGTGCTTTGAACGGGCCTGACCCTTTTGCGTGTGTCCCGAGTGCTTGAGG
TAGGACCTTTCTGCAGGCCTGAGGCAAAATGCTCTGTTTGCAGAGTTGCG
CGCTGTAAGCGTAAACATCTTGGCATGCACTGCCGCCACATGTCAAGTCA
ACACTGCAAGGCGTCGTCGGCAGCCGCTTGTTGCGATGCACCTAGTCACT
GCGCACCTGCCCCAAGCCCCAACACACGATCATCTGCTGCCTTGAACTCC
TCATGCAGCAGCAACAGCAGCACCATGGCGCTGTTCGGCGCGATGCTGCG
GCCGATGGCGCAGGCAGCGAGCAGTGTGGCGTTGCGGGGGCAGAAGCGAT
TCGCTGGGGGGCTCAAAATTCACGACCAGAACAAGGCACATGTCTTTGGG
GAAGTGCCAGGGCACCATAAGAAGGAGGGGTGGGAGACGATCTGGTATCT
GACGCTGGCGGCGTCCGCTGTGATGCTGGTGTTTGGAATAGGGCAGAAAC
CTGTGACAGGAATAGAGGTGAGTACCATGTTGGTGCTGTCTGTCGACGTG
TTTTTGCCATGTGCAGATGGTCTGCAGCAGACTCACTCTAGGGCGATGTG
ATAAAACTTATGTGAATATGGCTCAGGCTGAGTTTTAAGGCTGTGGCTGC
TTTGCAGCATACCCTTCTTCAACGACCCCATGCGCAGCTTGTGGCATTGT
AACATAATTTAGGCAACGGAGCAGGTCTTGCAGGTCCCCGCAAGCAGCAG
TGCGCATGTACATAGTCCATTACATGGACCATGCCTTCACGCTGATGTTG
CCTGCGAGTCCACCTGTGCACTAGCACCATTTCAGCAAGCTGGCGGCGCT
CAAATATAACAAAGCTTTGAGTGAAAGTAAATCCTGCGTCCGCCGACACA
CATACAGCGCATGTCTTACTTACAGCTATCTAAATGAGTTGAAACTGCGC
AAAACTCTGTGTCCCTAGCTCACACCGAGCCCAGGTGCTGTGCCTCATCT
CCTGACGCATTTGCAGCGACACTGCGCTTTCACACGCTGTTGCAAACTAC
AGTATCAATCGTTCGCTGCATGCTTAGGGCTACTTCACTGGGTAGTGCTA
CACGCTCACACGCTGTCACACGCTACACTAATCATTCTTTGCAACTCCGC
GCTTCCACTTCACGTCACACCACACATTCGCTGCGACGCCGTGTTTCATA
TCCTGTCACACATCAAGTGAACATATTCGCTGCGATACCGCGCCTGTCAG
CAGCACTGGGCCATGGAGGAGGCGGCAGCGCTCAATAACGCTGCGCCCAC
ACGCGCTGTCGCACGCCGCACCACACATTCCCTGTGACGCCGCGCTTCAC
CGCCACCGCTGGGCCCCAGATGACAGCCTCGCAACGACTCTGTAATGCTC
ACGCCGTTAGGAGGCTCGATGTCGATCGCTTCTGCGCTGCAACGCCACTT
ACTCCGTTGCTGCGCCGCGCCTGACTGGCGGCACTGGGCCCTGGACGACG
GCCATCAAACCACTCCGTTGCCCGTAGCAAACTCAATGTCGGTCGCTTCT
CCGCTGCGACGCGACTCACTACGATGCGGCGCCGTGCCTGACAGCATTTG
AGGTCTGAACAACAGCTTCTGAACCACTTCGTTTCGCTCGCGCCAGTAGC
AAGCTTGATGTTGATCGTTTTCCCATTGCAATGCCACTCATCCTGTTGCG
ATGCCGCGCCGCCTGACGGCAGCACTGGGTCCTGAACAAGGCGGCCCATG
AACCACCACTCCGCTGCCGCGTAGCAAGCTTGATGTCCATTGCCTATTCA
TTCATCGCGATGCCGCTCATTCCGTTGCGACGCCGCGACGCCTGACAGCA
GCACTGGGCCCTGAACAACAGCTGCTGAACCATTCCGTTGCCCAGTAGCA
AGCTTGATGTCCATTGCGTATTTATTCGTTGCGACGCTGCTCACGTCATT
ACGATGGCGCGCCGCCTGACCGCAACACTAAGTCCTGAACAACAGCTGCT
CAAGCACTCTGTTGCCCGCAGCAACCTCAATGTCCATCGCTTTTTCGCTG
CAACGCCACTCATTCCGTTGCAATGCCGCGCCGTGTGACCGCAGCACTGG
GCCCTCGACGAGGCGGCAGCGCGCAACAAGGTGGAGGCCAAGGGCGGCAC
GCTCGAGTACGGCGTCATCTACTCCAATCAGCCCGCGATCCGCTTCCGGA
AGACGGACGCGGGCATGCCGGAGGTCATTGACGACGACGAGGACGAGTGA
GCAGCAGCGCTCAGTGATTGAGAGCGCGGCCGCCGCGCAGTGCTCAGCAG
ATTTTCGGGGGGCGCTGCGTGGCAGTGCTCGCAGGGCAGCAGCAGCGCTC
AGCGCATGAGAGCGCGGCCGCACAGTGCTCAGCAGATTTTCGGCGGCGCA
GATTTTTGGGGGCGCCTCGTGGCAGTGCTCGCAGGGCAGCACCAGCGCTC
GGCGCATGAGAGCGCAGCCGCGCAGTGCTGAGCAGCATTGCGGTCGTGAC
TCACGAAGAGATGGCAGTGCTTGCAGTATCTAGGAATTTGAAGTAGTCGG
TGGCCCTGGTGGCACCGCGGGCTAGCACGATAAATGTGTGATTGGTTTTA
CTGGTG
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Coding sequence (CDS) from alignment at Contig_9:331810..334465+

>mRNA_3534 ID=mRNA_3534|Name=jgi.p|Trimin1|347194|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_9:331810..334465+ (Tribonema minus UTEX_B_3156 )
ATGGCGCTGTTCGGCGCGATGCTGCGGCCGATGGCGCAGGCAGCGAGCAG
TGTGGCGTTGCGGGGGCAGAAGCGATTCGCTGGGGGGCTCAAAATTCACG
ACCAGAACAAGGCACATGTCTTTGGGGAAGTGCCAGGGCACCATAAGAAG
GAGGGGTGGGAGACGATCTGGTATCTGACGCTGGCGGCGTCCGCTGTGAT
GCTGGTGTTTGGAATAGGGCAGAAACCTGTGACAGGAATAGAGCACTGGG
CCCTCGACGAGGCGGCAGCGCGCAACAAGGTGGAGGCCAAGGGCGGCACG
CTCGAGTACGGCGTCATCTACTCCAATCAGCCCGCGATCCGCTTCCGGAA
GACGGACGCGGGCATGCCGGAGGTCATTGACGACGACGAGGACGAGTGA
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