mRNA_3507 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|96687
Unique NamemRNA_3507
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|96687 vs. uniprot
Match: A0A835YHR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHR2_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.300e-60
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 2 
Query:   32 MAVAWAAFCTHAAAGAQVIDVVATPCPDIGPLCFQFPSCRRIAWAAILKFDFEASVPQGVELHVAAGELQTMQTARQQHRVAKAAPNCVAVAL 310
            MAVAWAAFCTHAAAGAQVIDVVATPCPDIGPLCFQFPSCRRIAWAAILKFDFEASVPQGVELHVAAGELQTMQTARQQHRVAKAAPNCVAVAL
Sbjct:    1 MAVAWAAFCTHAAAGAQVIDVVATPCPDIGPLCFQFPSCRRIAWAAILKFDFEASVPQGVELHVAAGELQTMQTARQQHRVAKAAPNCVAVAL 93
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|96687 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YHR2_9STRA2.300e-60100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:79749..80111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|96687|CE96686_7
Hectar predicted targeting categorysignal peptide
TranscriptId97009
TrackFilteredModels1
ProteinId96687
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|96687gene_3507Tribonema minus UTEX_B_3156 geneContig_9 79749..80111 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3507_1exon_3507_1Tribonema minus UTEX_B_3156 exonContig_9 79749..80111 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3507UTR3_3507Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 79749..79798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3507CDS_3507Tribonema minus UTEX_B_3156 CDSContig_9 79799..80080 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3507UTR5_3507Tribonema minus UTEX_B_3156 five_prime_UTRContig_9 80081..80111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|96687Trimin1|96687|CE96686_7Tribonema minus UTEX_B_3156 polypeptideContig_9 79799..80080 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3507 ID=mRNA_3507|Name=jgi.p|Trimin1|96687|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_9:79749..80111- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCAATGTTGTACAGCGCGTCAGCAGCAGCATGGCAGTTGCCTGGGCAG
CCTTCTGCACGCATGCTGCAGCAGGCGCACAAGTGATTGATGTGGTTGCC
ACTCCTTGTCCTGACATTGGCCCCCTCTGCTTTCAGTTCCCCAGCTGCAG
GCGCATTGCATGGGCAGCCATCCTGAAGTTTGACTTTGAAGCCTCAGTGC
CCCAAGGTGTTGAATTGCACGTAGCCGCAGGTGAGCTGCAGACAATGCAG
ACAGCACGCCAGCAGCACAGAGTTGCCAAGGCAGCTCCCAATTGTGTTGC
AGTGGCTTTGTAGTCGGGCCGCACGCCAGGCAATTGCACTCCTTTCTGAG
GATTTTACACTAG
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protein sequence of jgi.p|Trimin1|96687

>Trimin1|96687|CE96686_7 ID=Trimin1|96687|CE96686_7|Name=jgi.p|Trimin1|96687|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=94bp
MAVAWAAFCTHAAAGAQVIDVVATPCPDIGPLCFQFPSCRRIAWAAILKF
DFEASVPQGVELHVAAGELQTMQTARQQHRVAKAAPNCVAVAL*
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mRNA from alignment at Contig_9:79749..80111-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3507 ID=mRNA_3507|Name=jgi.p|Trimin1|96687|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=363bp|location=Sequence derived from alignment at Contig_9:79749..80111- (Tribonema minus UTEX_B_3156 )
CAGCAATGTTGTACAGCGCGTCAGCAGCAGCATGGCAGTTGCCTGGGCAG
CCTTCTGCACGCATGCTGCAGCAGGCGCACAAGTGATTGATGTGGTTGCC
ACTCCTTGTCCTGACATTGGCCCCCTCTGCTTTCAGTTCCCCAGCTGCAG
GCGCATTGCATGGGCAGCCATCCTGAAGTTTGACTTTGAAGCCTCAGTGC
CCCAAGGTGTTGAATTGCACGTAGCCGCAGGTGAGCTGCAGACAATGCAG
ACAGCACGCCAGCAGCACAGAGTTGCCAAGGCAGCTCCCAATTGTGTTGC
AGTGGCTTTGTAGTCGGGCCGCACGCCAGGCAATTGCACTCCTTTCTGAG
GATTTTACACTAG
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Coding sequence (CDS) from alignment at Contig_9:79749..80111-

>mRNA_3507 ID=mRNA_3507|Name=jgi.p|Trimin1|96687|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=282bp|location=Sequence derived from alignment at Contig_9:79749..80111- (Tribonema minus UTEX_B_3156 )
ATGGCAGTTGCCTGGGCAGCCTTCTGCACGCATGCTGCAGCAGGCGCACA
AGTGATTGATGTGGTTGCCACTCCTTGTCCTGACATTGGCCCCCTCTGCT
TTCAGTTCCCCAGCTGCAGGCGCATTGCATGGGCAGCCATCCTGAAGTTT
GACTTTGAAGCCTCAGTGCCCCAAGGTGTTGAATTGCACGTAGCCGCAGG
TGAGCTGCAGACAATGCAGACAGCACGCCAGCAGCACAGAGTTGCCAAGG
CAGCTCCCAATTGTGTTGCAGTGGCTTTGTAG
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