mRNA_3498 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|142190
Unique NamemRNA_3498
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|142190 vs. uniprot
Match: A0A836C8B9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8B9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.360e-10
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 CPHGKRRSSCVHCGGASICEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAICCERCEHGRWKHLCK 351
            CPHGKRRSSCVHCGGASICEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAICCERCEHGRWKHLCK
Sbjct:    1 CPHGKRRSSCVHCGGASICEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAICCERCEHGRWKHLCK 117
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142190 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C8B9_9STRA7.360e-10100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:19152..19502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|142190|gw1.9.178.1
Hectar predicted targeting categoryother localisation
TranscriptId142512
TrackFilteredModels1
ProteinId142190
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142190gene_3498Tribonema minus UTEX_B_3156 geneContig_9 19152..19502 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3498_1exon_3498_1Tribonema minus UTEX_B_3156 exonContig_9 19152..19502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3498CDS_3498Tribonema minus UTEX_B_3156 CDSContig_9 19152..19502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142190Trimin1|142190|gw1.9.178.1Tribonema minus UTEX_B_3156 polypeptideContig_9 19152..19502 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3498 ID=mRNA_3498|Name=jgi.p|Trimin1|142190|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_9:19152..19502- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCCCGCACGGCAAGCGGCGCAGCTCATGTGTGCACTGTGGTGGTGCATC
GATTTGCGAGCACAAGCGCGAACGTGCCTACTGTGTAGACTGCGACGGGA
GTCAGATATGTGAACATAAACGGCAGCGCACCAGGTGCAAAGATTGTCAC
GGGGGTCATATATGCGAGCACAATCGCTCCCGCTCTGGATGCAAAGATTG
CAATGGGAGCCAGATATGTGAGCATGGTCGACAACGCTGTAGATGCATCG
ATTGTGGAGGTGCGTCTATGTGTGACCACGGTCATCAGCGCACAGGCTGT
GCCATCTGCTGCGAGCGGTGCGAACACGGCCGGTGGAAGCATTTGTGTAA
G
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protein sequence of jgi.p|Trimin1|142190

>Trimin1|142190|gw1.9.178.1 ID=Trimin1|142190|gw1.9.178.1|Name=jgi.p|Trimin1|142190|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
CPHGKRRSSCVHCGGASICEHKRERAYCVDCDGSQICEHKRQRTRCKDCH
GGHICEHNRSRSGCKDCNGSQICEHGRQRCRCIDCGGASMCDHGHQRTGC
AICCERCEHGRWKHLCK
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mRNA from alignment at Contig_9:19152..19502-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3498 ID=mRNA_3498|Name=jgi.p|Trimin1|142190|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_9:19152..19502- (Tribonema minus UTEX_B_3156 )
TGCCCGCACGGCAAGCGGCGCAGCTCATGTGTGCACTGTGGTGGTGCATC
GATTTGCGAGCACAAGCGCGAACGTGCCTACTGTGTAGACTGCGACGGGA
GTCAGATATGTGAACATAAACGGCAGCGCACCAGGTGCAAAGATTGTCAC
GGGGGTCATATATGCGAGCACAATCGCTCCCGCTCTGGATGCAAAGATTG
CAATGGGAGCCAGATATGTGAGCATGGTCGACAACGCTGTAGATGCATCG
ATTGTGGAGGTGCGTCTATGTGTGACCACGGTCATCAGCGCACAGGCTGT
GCCATCTGCTGCGAGCGGTGCGAACACGGCCGGTGGAAGCATTTGTGTAA
G
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Coding sequence (CDS) from alignment at Contig_9:19152..19502-

>mRNA_3498 ID=mRNA_3498|Name=jgi.p|Trimin1|142190|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_9:19152..19502- (Tribonema minus UTEX_B_3156 )
TGCCCGCACGGCAAGCGGCGCAGCTCATGTGTGCACTGTGGTGGTGCATC
GATTTGCGAGCACAAGCGCGAACGTGCCTACTGTGTAGACTGCGACGGGA
GTCAGATATGTGAACATAAACGGCAGCGCACCAGGTGCAAAGATTGTCAC
GGGGGTCATATATGCGAGCACAATCGCTCCCGCTCTGGATGCAAAGATTG
CAATGGGAGCCAGATATGTGAGCATGGTCGACAACGCTGTAGATGCATCG
ATTGTGGAGGTGCGTCTATGTGTGACCACGGTCATCAGCGCACAGGCTGT
GCCATCTGCTGCGAGCGGTGCGAACACGGCCGGTGGAAGCATTTGTGTAA
G
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