mRNA_3484 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347985
Unique Name	mRNA_3484
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|347985 vs. uniprot
Match: A0A835Z7D5_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D5_9STRA)

HSP 1 Score: 327 bits (838), Expect = 5.830e-110
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1

Query:    1 MAAVRPLDGPLPPSLFESISRRDESGLRKYIAAGFDCNGSAAMVKALVEAGANPNYGGFNGGDTPLMQAAARGYLDVVRYLVESAGVDINAVNHMXXXXXXXXXXXXXXXXXXXXXDSGADTQIYNDAGKLAGEEFDALFEXXXXXXXXXXXXXXXXXXXXXXAADAKGAADVRALLKDYRVRRGLFVEEEKNPLLWYLEEDELEGDGAQDPNGHQ 648
            MAAVRPLDGPLPPSLFESISRRDESGLRKYIAAGFDCNGSAAMVKALVEAGANPNYGGFNGGDTPLMQAAARGYLDVVRYLVESAGVDINAVNHMXXXXXXXXXXXXXXXXXXXXXDSGADTQIYNDAGKLAGEEFDALFEXXXXXXXXXXXXXXXXXXXXXXAADAKGAADVRALLKDYRVRRGLFVEEEKNPLLWYLEEDELEGDGAQDPNGHQ
Sbjct:    1 MAAVRPLDGPLPPSLFESISRRDESGLRKYIAAGFDCNGSAAMVKALVEAGANPNYGGFNGGDTPLMQAAARGYLDVVRYLVESAGVDINAVNHMXXXXXXXXXXXXXXXXXXXXXDSGADTQIYNDAGKLAGEEFDALFEXXXXXXXXXXXXXXXXXXXXXXAADAKGAADVRALLKDYRVRRGLFVEEEKNPLLWYLEEDELEGDGAQDPNGHQ 216

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347985 vs. uniprot

BLAST of jgi.p|Trimin1|347985 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z7D5_9STRA	5.830e-110	100.00	Ankyrin repeat-containing domain protein n=1 Tax=T...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_17	contig	Contig_17:1308303..1312976 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347985\|estExt_Genemark1.C_Ctg_170173
Description	protein ubiquitination
COG category	I
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG0666@1\|root,KOG0504@2759\|Eukaryota
Evalue	2.55e-07
Seed ortholog	2880.D8LP11
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Ankyrin repeat-containing domain
Ec32 ortholog	Ec-06_007010.1
TranscriptId	348307
Track	FilteredModels1
ProteinId	347985

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347985	gene_3484	Tribonema minus UTEX_B_3156	gene	Contig_17 1308303..1312976 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347985	Trimin1\|347985\|estExt_Genemark1.C_Ctg_170173	Tribonema minus UTEX_B_3156	polypeptide	Contig_17 1308303..1312678 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3484_1	exon_3484_1	Tribonema minus UTEX_B_3156	exon	Contig_17 1308303..1308318 +
exon_3484_2	exon_3484_2	Tribonema minus UTEX_B_3156	exon	Contig_17 1308529..1308626 +
exon_3484_3	exon_3484_3	Tribonema minus UTEX_B_3156	exon	Contig_17 1309004..1309116 +
exon_3484_4	exon_3484_4	Tribonema minus UTEX_B_3156	exon	Contig_17 1309848..1309944 +
exon_3484_5	exon_3484_5	Tribonema minus UTEX_B_3156	exon	Contig_17 1311167..1311265 +
exon_3484_6	exon_3484_6	Tribonema minus UTEX_B_3156	exon	Contig_17 1311342..1311398 +
exon_3484_7	exon_3484_7	Tribonema minus UTEX_B_3156	exon	Contig_17 1312429..1312446 +
exon_3484_8	exon_3484_8	Tribonema minus UTEX_B_3156	exon	Contig_17 1312526..1312976 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3484	CDS_3484	Tribonema minus UTEX_B_3156	CDS	Contig_17 1308303..1308318 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_3484	UTR3_3484	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_17 1312679..1312976 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_17:1308303..1312976+
coding sequence from alignment at Contig_17:1308303..1312976+

spliced messenger RNA

>mRNA_3484 ID=mRNA_3484|Name=jgi.p|Trimin1|347985|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=949bp|location=Sequence derived from alignment at Contig_17:1308303..1312976+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCCGTCCGCCCGCTCGACGGCCCGCTCCCGCCGAGCCTGTTTGA
GTCCATCTCGCGGCGCGACGAGAGCGGCTTGAGAAAGTACATCGCCGCCG
GCTTCGACTGCAACGGGAGCGCTGCCATGGTCAAGGCGCTGGTGGAGGCG
GGCGCGAACCCTAATTACGGCGGGTTCAACGGCGGCGACACGCCGCTCAT
GCAGGCCGCCGCCCGCGGCTACTTAGACGTGGTGAGGTACCTGGTGGAGA
GCGCCGGAGTCGACATCAATGCGGTCAACCACATGGGGGACACGGCGCTG
GCCGTCGCCTGCTTCTGGGGGCAGGTCCCAACCGTCAAGTACCTGCTTGA
CAGCGGCGCAGACACACAGATCTACAACGATGCCGGCAAACTGGCGGGCG
AGGAGTTCGATGCCCTCTTCGAGATCTACGAAGGTGCTAGCAAGCTGGCG
GGCGAGGAGTTCGACGCCCTCTTTGAGCGTGCCAAGGGCGCTGCTGACGC
CAAGGGCGCCGCGGACGTGCGCGCGCTCCTCAAGGACTACCGCGTGCGGC
GCGGCCTCTTTGTGGAGGAGGAGAAGAACCCCCTGCTGTGGTACCTGGAA
GAAGACGAATTGGAAGGGGACGGTGCTCAAGACCCCAACGGCCACCAATG
AAGTACGGTAGAGGCGATAAATACGTGGTGTTTGGAAGACCTGTGGGTTT
ATGCGTGGCCCTTGTGGCGCCTTGTAGACTGGTGCAGAGAGCGTGCGTGC
ATCTCGTGCCTGATTTTGTTGCCACCGATAAACTAAGCACTGTAGAGCCA
TGATGTGGCCAGGAAGAATGGGGTTCTTGTACTGGATTCGGTCTGCGGCA
AAGCATGTGTATGCATAGGTCATCGCCAAGAAACAAAATGAAAACAAACG
CATGCCAGGAACAAATGTAAACGAACAAATTGGGGTTCTTGTGAATTCC

protein sequence of jgi.p|Trimin1|347985

>Trimin1|347985|estExt_Genemark1.C_Ctg_170173 ID=Trimin1|347985|estExt_Genemark1.C_Ctg_170173|Name=jgi.p|Trimin1|347985|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=217bp
MAAVRPLDGPLPPSLFESISRRDESGLRKYIAAGFDCNGSAAMVKALVEA
GANPNYGGFNGGDTPLMQAAARGYLDVVRYLVESAGVDINAVNHMGDTAL
AVACFWGQVPTVKYLLDSGADTQIYNDAGKLAGEEFDALFEIYEGASKLA
GEEFDALFERAKGAADAKGAADVRALLKDYRVRRGLFVEEEKNPLLWYLE
EDELEGDGAQDPNGHQ*

mRNA from alignment at Contig_17:1308303..1312976+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3484 ID=mRNA_3484|Name=jgi.p|Trimin1|347985|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4674bp|location=Sequence derived from alignment at Contig_17:1308303..1312976+ (Tribonema minus UTEX_B_3156 )
ATGGCGGCCGTCCGCCGTGAGCAGGCGCGCAGCACTCCTCATGCAGCGCT
GAAGCATCTCTGCCGAAGTTGCGCCACAATCGCTGATTATGAACGTGCAC
GCGCTCACACAGGCCGCACAAGCGCGCGCACGCACGCACACGCTGCGCAG
CGCTGCCTGTGACCGCGGGCCGCCGCTCATGTCCGCCGTGCCCATGCCTG
TGCTCTGAGTGTTGCAGCTGCGCCAGCGCTCGACGGCCCGCTCCCGCCGA
GCCTGTTTGAGTCCATCTCGCGGCGCGACGAGAGCGGCTTGAGAAAGTAC
ATCGCCGCCGGCTTCGACTGCAACGTGGCGGACGCATTAGGTACTTCACC
GGGAGCACGCTGCGCAGCGCGCTTGCTGAGCATTGCATCGTGCGCGAGGC
TAGCATTGTCGTCTATTCTGAGTGCCAGTTGCTGCATGCTTGAAGCACAT
ACCGGGTGCGTGCATCATGGTTGCCAGAAGTCAGAGTATTGTTTTGTGCG
ATTGCGCTGCGCACTTTACACCCGTCCTTCTAGCTCACGTCTTCTGGCTC
ACGCGTTGCATGCCAGCGGCGGGCCCTCCTGACACGCGTGCGCGCCACAA
CTGCACCCATCAACAGTGGACACTAATTACACGCACGCATGCGCGCGCCG
CAATTGCGCCTTCTTTCAGGTGAGCCAGCAGTGTGCCATGCGGCGCTGCA
GGGGAGCGCTGCCATGGTCAAGGCGCTGGTGGAGGCGGGCGCGAACCCTA
ATTACGGCGGGTTCAACGGCGGCGACACGCCGCTCATGCAGGCCGCCGCC
CGCGGCTACTTAGAGTGAGTGTTGGAGTGAGTCGTAGAGTCCTTGTGATG
ATGCGTCATTGGCAACGTGCCGCTCATGCGCTTTGCGACCCGCGGCTACT
TAGAGTGAGTCTTGGAGTCATTACATCCTAACACATACCTGGTGGCACGC
TGCTGATGCATGCCGCGGCATGCGGCCATGTACAGTGAACTCAGGGTGAG
CGTTGATGTCAATGTGACGGTAGCTGATGCGTGCCGTGGCTTGCGGCTGA
ATGAGTCTTAGTTTTAGTCATGACATTCATACTGCCAGTGTCTGGGTTGC
ATGCGGGGTACCTGGGTGCTCTTTGAAGTAGTCACCTGGTTTTCGGAGCG
TTCAACGGCCATGCCATGACTGTCATGCACTCAGCACCGCCTTCATGGAA
GCGTGTGTCAGTCGCAGACAAATTGCATTACTCAGGGGCGCTCCCGTGTC
TTCAACTTGAGGTACCAACTTGAGGTATCACTGCCAGTTCGCCTCGGTGT
CATGTGCGCCAGCATTCATCAAGCTCGGGATCGCCTGCTCGGGTGCGGTC
TGCTGGACCATGCGATACGCCCTCAGAACACTGCAACAGCAGCGACGCAA
GTGATTCAAGACCTGACTTTAACCCTAACACCATGGCAGCGCTCAGCTCC
CAGATCACAGGAAGCCCCAGCCTGCTGTCACGCTCACACATATATGCTCA
TGTTGCCTGCTCTGTGCCCCCTGCCGCCGTTGCGGCGCGCGCCAGCGTGG
TGAGGTACCTGGTGGAGAGCGCCGGAGTCGACATCAATGCGGTCAACCAC
ATGGGGGACACGGCGCTGGCCGTCGCCTGCTTCTGGGGGCAGGTGAGGGG
ATTGCCAGAAGTTGAAGTTGGGGTGGTTGCTGATGATACCACGTGGTACC
CGGAAGTAATAGTACCTCGCAGTATGGCGTCTTGGGTGCAGGTGGGGGGG
TGGGGGGGGGGGGGGGGGGGCTGCAAAGCTAGAGTTGGGGTGGTGGTTGC
TGTGACAGCACATAGCACACCTCACAGCAGTGGACTTCGAAGCGTTGTGG
CAGTTGCAGAGCACTGACGCAGATGCTCAGGCAGCTCAGGCAGCGCAGGC
AGTTGACAGATGCTGCTTCGTTTCGTGTTCTTGGTGGTGGATGCATACTG
GTGACTGTTTACTTCAACCTGATGTTGTGCAGTTGAACTGATTCATCATA
TAGGACACGAGGCTGCGAGAGGCAGCCGGTCACCCACTGCCTCTTTCGTG
GTCACTGCAAGTATCGTCACGCAGCTGCTGTAGCCTTTTCGAGCTAGCAT
CCCGTGCACCTGCAGGCTGTGTTTACCGCGAACTTGACTTGAAGTACAAC
ATTTGAAGTACAATGTCAGCAGGTCAGCGCTCCGTGCAGCACTCCCCCGA
GCGCTTCGTACCGTGCTGCACATGCGCGCGTGCGGATCGTCACCTCACCA
CGGCTCGGAGATCGAGCGCGCAGCGCAGCAACTAAGTTTTCTCCTGGTCT
CTTTCACATGGCGGACGTGGGAGGCGACGCGCCGCAGCGGCGTGACTCAT
CTTGAGCTCGAGCAGAACACCGCTGTAGCGACCGCTCGCTCTAGTGCACG
CTTCACCGACCTCTCAAAGTGAACTGGTGAAGATCAAGAGCATCAGCTCG
TGATGCGGATGCTAGGGCCGGTCGGGGTCATGCTGCGGAGCGCTGCAACG
CATCCATTTCCCTGGTCCAGCAGTATCCACCCTGCGCGCACACGCATTGT
TAACTGCCATCATGCTCTTTCAGCCATATTGTTATTGCAATGCGCACTGT
AACCGTAGATCACAAATGTCAAACATATGCCCTCAAATATACATGTAGAG
GGATTGGAGCAACGCGAACTCTCACATCAATGTACACCCCCTCGCAGCTG
CTGCCATCATCTGTAGCGTTCTGAACAGATAAATGCGTGTGCTAGACAGC
TACATAAAATGCAGAAGTGGAAAGCGGTAGTCTAGGAAACAGGCTGCGGC
GCTGTCTCCCGCCTTCATCGCACCCTTTGTGTTCCCTCTCTGGATTGCGC
CGCTGCTGCCGCAGGTCCCAACCGTCAAGTACCTGCTTGACAGCGGCGCA
GACACACAGATCTACAACGATGCCGGCAAACTGGCGGGCGAGGAGTTCGA
TGCCCTCTTCGAGGTGTGTTAGTTCATCTTCAAGTACATCTTCAAGTCGT
GGTATATCTTCAAGTATATCTTCATGTATATATTCGCAGATCTACGAAGG
TGCTAGCAAGCTGGCGGGCGAGGAGTTCGACGCCCTCTTTGAGCGTGTTA
GTTCATCTTCAAGTACATACTTCAAGTACATCTTCAAGTCGTGGTATATC
TTCAAGTATATATTCATGTATATATTCGCAGATGTACAACGACGCCGGCA
AGCTGGCGGGCTGAGGAGTTCGATGCCCTCTGTGAGATACATAGGCGTGT
TGGTGTCACCAACTTATCCTCAAGTTCAACGTCACATGCTACTGAGGTAC
GCCGCCGCATGCTGGTTCTTAGTCAGAGTCAGGGCTACCAGTTCTACTAG
TAGTGGTGCCGCGTGCTGCTGAGGTGGGCGGCTGCGGTGTGACCTGAAGC
TAGGGGGCGTTTACTAGTCGTAGCAGAGTCACGGCGCACGGCGCTGCAGT
CTTTGATGGAGTTAGGGTTAGGGTTGGCAGCTGCTGTTCAGTGCAGTACA
GTGCTGCGTACTCCCAACGCATGAGCCGCAGTCTCCATCAGAGTTAGGGT
TACGGCTAGCAGCCCTAGTAGTTGCGGAAAGCACGGCGTCTCAGTGTATT
GGAGATAGGGCCAGCAATACTAGCAGTTCTGTGCAGCGGCACTGCGGTAT
AGACGTCGTGGTTTTGCCCATGCAACACATTCCATACGAGGCTCTCAGCA
TGACACCTACTCTGCAAAGTTAGGATTTGCGGCGTGCGCAGGCCAAGGGT
GCCGCGGACGTGCGCGCTCTCCTCACACGTACAATTACATTTGAAGTTAT
CAGCATCTTCACTGGAAAGTCAAACTTGTTTCCATTTGAAGTTATCAGCA
ACTTCACTGGATAGTTGAACTTGCGACGCGCACAGGCCAAGGGCGCTGCG
GACGTGCGCGCACTCCTCACACATATAATTACATTTGAAGTTATCAGCAT
CTGCACTGCAAACTTTAACTTGTTTACATTTGACATTGTCAGCAACTTCA
CTGGATAGTTCAACTTGTGACTCGCGCAGGCGTGCGCGCGCTCCTCACAC
ATAATTAAGTTTTGAAGTATATCAGCATCTGACAACGCTTACACTGGAAA
GTTGTACATGCTTGCGACGCGCGCAGGCCAAGGGCGCTGCTGACGTACGC
GCTCTCCTCACCCACAATTACATCTAGTGTTGTCAGCATCTTCACTAGAT
GGTTAAACTTGTGACGCACGCAGGCCAAGGGCGCCGCGGACGTGCGCGCG
CTCCTCAAGGACTACCGCGTGCGGCGCGGCCTCTTTGTGGAGGAGGAGAA
GAACCCCCTGCTGTGGTACCTGGAAGAAGACGAATTGGAAGGGGACGGTG
CTCAAGACCCCAACGGCCACCAATGAAGTACGGTAGAGGCGATAAATACG
TGGTGTTTGGAAGACCTGTGGGTTTATGCGTGGCCCTTGTGGCGCCTTGT
AGACTGGTGCAGAGAGCGTGCGTGCATCTCGTGCCTGATTTTGTTGCCAC
CGATAAACTAAGCACTGTAGAGCCATGATGTGGCCAGGAAGAATGGGGTT
CTTGTACTGGATTCGGTCTGCGGCAAAGCATGTGTATGCATAGGTCATCG
CCAAGAAACAAAATGAAAACAAACGCATGCCAGGAACAAATGTAAACGAA
CAAATTGGGGTTCTTGTGAATTCC

Coding sequence (CDS) from alignment at Contig_17:1308303..1312976+

>mRNA_3484 ID=mRNA_3484|Name=jgi.p|Trimin1|347985|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=651bp|location=Sequence derived from alignment at Contig_17:1308303..1312976+ (Tribonema minus UTEX_B_3156 )
ATGGCGGCCGTCCGCCCGCTCGACGGCCCGCTCCCGCCGAGCCTGTTTGA
GTCCATCTCGCGGCGCGACGAGAGCGGCTTGAGAAAGTACATCGCCGCCG
GCTTCGACTGCAACGGGAGCGCTGCCATGGTCAAGGCGCTGGTGGAGGCG
GGCGCGAACCCTAATTACGGCGGGTTCAACGGCGGCGACACGCCGCTCAT
GCAGGCCGCCGCCCGCGGCTACTTAGACGTGGTGAGGTACCTGGTGGAGA
GCGCCGGAGTCGACATCAATGCGGTCAACCACATGGGGGACACGGCGCTG
GCCGTCGCCTGCTTCTGGGGGCAGGTCCCAACCGTCAAGTACCTGCTTGA
CAGCGGCGCAGACACACAGATCTACAACGATGCCGGCAAACTGGCGGGCG
AGGAGTTCGATGCCCTCTTCGAGATCTACGAAGGTGCTAGCAAGCTGGCG
GGCGAGGAGTTCGACGCCCTCTTTGAGCGTGCCAAGGGCGCTGCTGACGC
CAAGGGCGCCGCGGACGTGCGCGCGCTCCTCAAGGACTACCGCGTGCGGC
GCGGCCTCTTTGTGGAGGAGGAGAAGAACCCCCTGCTGTGGTACCTGGAA
GAAGACGAATTGGAAGGGGACGGTGCTCAAGACCCCAACGGCCACCAATG
A