mRNA_3481 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA) HSP 1 Score: 224 bits (572), Expect = 3.070e-74 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 Query: 1 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP Sbjct: 1 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 118
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A6H5KE17_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE17_9PHAE) HSP 1 Score: 145 bits (366), Expect = 4.920e-38 Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 1 Query: 4 KRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDD-KAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354 KRQTSE+VA RLP+ VLE FYHVPLN+AA++L+VSLTMLKKLCR YG+KRWPHRQVSSL+K+ KLE+KI D K A +L K R +R++IIKTASAGLD VLN++F RP Sbjct: 464 KRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKIKARRDGGKDAPSLVRKLTQARKRRKVIIKTASAGLDVSVLNSIFTCRP 581
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: D7FS12_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS12_ECTSI) HSP 1 Score: 145 bits (365), Expect = 6.110e-38 Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 1 Query: 4 KRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDD-KAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354 KRQTSE+VA RLP+ VLE FYHVPLN+AA++L+VSLTMLKKLCR YG+KRWPHRQVSSL+K+ KLE+KI D K A +L K R +R++IIKTASAGLD VLN++F RP Sbjct: 464 KRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKIKTRRDGGKDAPSLVRKLTQARKRRKVIIKTASAGLDASVLNSIFTCRP 581
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A836CMG7_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG7_9STRA) HSP 1 Score: 103 bits (257), Expect = 2.310e-23 Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 1 Query: 7 RQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354 RQ S EV +R+ +SVLE Y PL AAR L VS TMLKKLCR+YGI+RWPHRQ+ S+ K + K + A+ AA + L+ KR +++KTAS GL+ + +A+F ARP Sbjct: 90 RQNSREVGQRITLSVLEACYGEPLTAAARRLGVSNTMLKKLCRRYGIQRWPHRQIRSIEKEVQKHMQARAQATSAVDIAACDERIALLQKKRAIVVKTASCGLNASLRSAIFMARP 205
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A835Z1M5_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M5_9STRA) HSP 1 Score: 101 bits (251), Expect = 4.280e-23 Identity = 50/109 (45.87%), Postives = 76/109 (69.72%), Query Frame = 1 Query: 28 AKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354 A + + +L+ FY+VPL A+EL +SLT+LKK+CR+YGI+RWPHRQ+ S+NKS +L E+I GA+ + A L+++ L K+ L+ + AS+GL + NA+F A P Sbjct: 11 ADNITLELLQSFYNVPLAELAKELGLSLTLLKKICRKYGIQRWPHRQIRSINKSAQELTERINGATSHEERAELQSQLHLLEKKKRLVTRGASSGLQSALRNALFLANP 119
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: H6WBB7_VAULI (Putative NIN-like transcription factor n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB7_VAULI) HSP 1 Score: 99.8 bits (247), Expect = 1.250e-22 Identity = 49/117 (41.88%), Postives = 78/117 (66.67%), Query Frame = 1 Query: 4 KRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354 ++ T++ + + + +L+ +Y+VPL A+EL +SLT+LKK+CR++GI+RWPHRQ+ S+NK++ L E+I + A LR + G L KR L+ K AS+GL + NA+F A P Sbjct: 3 RQSTTQIEPEEITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSINKNIQDLNERINSVNSPDEHAELRNQIGLLEKKRRLVTKGASSGLHTAMRNAIFLANP 119
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: D7FN15_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN15_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.490e-21 Identity = 45/111 (40.54%), Postives = 74/111 (66.67%), Query Frame = 1 Query: 1 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLN 333 SKR+ ++AKR+PV ++ E+++ PL ++A + +S+T LK+LCR++G+KRWPHRQ+S LN++LG LE + A ++ AA+ + L +RE+II+ A D N Sbjct: 56 SKREVLADIAKRIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRTLGDLEAQHDAARGEEEIAAVEEELRQLHRRREVIIERAFESDDESTRN 166
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A6H5KFL8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL8_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 4.100e-20 Identity = 43/101 (42.57%), Postives = 72/101 (71.29%), Query Frame = 1 Query: 1 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTA 303 SKR+ ++AKR+PV ++ E+++ PL ++A + +S+T LK+LCR++G+KRWPHRQ+S LN++LG LE + A ++ AA+ + L +RE+II+ A Sbjct: 57 SKREVLADIAKRIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRALGDLEAQHDAARGEEEIAAVEEELRQLHRRREVIIERA 157
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A835YTG3_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG3_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.020e-19 Identity = 46/109 (42.20%), Postives = 74/109 (67.89%), Query Frame = 1 Query: 28 AKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354 A ++ + +L+ +Y+VPL A+EL +SLT+LKK+CR++GI+RWPHRQ+ SLNK+ +L+E+ A + A + A+ L K+ L+ + AS+GL + NA+F A P Sbjct: 8 ADQITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSLNKTAQELKERAQCALTAEEHAEIEAQLQLLEKKKRLVTRGASSGLQSALRNALFLANP 116
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A835YW93_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW93_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 7.980e-19 Identity = 38/67 (56.72%), Postives = 55/67 (82.09%), Query Frame = 1 Query: 7 RQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEE 207 RQ+S EV++R+ ++VLE Y++PL AA++L VS TMLKKLCR+YGI+RWPHRQ+ S++K + K +E Sbjct: 2 RQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQE 68 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3481 ID=mRNA_3481|Name=jgi.p|Trimin1|129502|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_17:1297951..1298304- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGCAAGCGGCAGACGAGCGAGGAGGTGGCCAAGCGCCTGCCCGTGAGCGTback to top protein sequence of jgi.p|Trimin1|129502 >Trimin1|129502|gw1.17.12.1 ID=Trimin1|129502|gw1.17.12.1|Name=jgi.p|Trimin1|129502|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKback to top mRNA from alignment at Contig_17:1297951..1298304- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3481 ID=mRNA_3481|Name=jgi.p|Trimin1|129502|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_17:1297951..1298304- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_17:1297951..1298304- >mRNA_3481 ID=mRNA_3481|Name=jgi.p|Trimin1|129502|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_17:1297951..1298304- (Tribonema minus UTEX_B_3156 )back to top |