mRNA_3481 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129502
Unique NamemRNA_3481
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA)

HSP 1 Score: 224 bits (572), Expect = 3.070e-74
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1
Query:    1 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354
            SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP
Sbjct:    1 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 118          
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A6H5KE17_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE17_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 4.920e-38
Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 1
Query:    4 KRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDD-KAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354
            KRQTSE+VA RLP+ VLE FYHVPLN+AA++L+VSLTMLKKLCR YG+KRWPHRQVSSL+K+  KLE+KI    D  K A +L  K    R +R++IIKTASAGLD  VLN++F  RP
Sbjct:  464 KRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKIKARRDGGKDAPSLVRKLTQARKRRKVIIKTASAGLDVSVLNSIFTCRP 581          
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: D7FS12_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS12_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 6.110e-38
Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 1
Query:    4 KRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDD-KAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354
            KRQTSE+VA RLP+ VLE FYHVPLN+AA++L+VSLTMLKKLCR YG+KRWPHRQVSSL+K+  KLE+KI    D  K A +L  K    R +R++IIKTASAGLD  VLN++F  RP
Sbjct:  464 KRQTSEDVAARLPLEVLECFYHVPLNVAAQQLNVSLTMLKKLCRAYGVKRWPHRQVSSLDKTTSKLEDKIKTRRDGGKDAPSLVRKLTQARKRRKVIIKTASAGLDASVLNSIFTCRP 581          
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A836CMG7_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.310e-23
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    7 RQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354
            RQ S EV +R+ +SVLE  Y  PL  AAR L VS TMLKKLCR+YGI+RWPHRQ+ S+ K + K  +    A+     AA   +   L+ KR +++KTAS GL+  + +A+F ARP
Sbjct:   90 RQNSREVGQRITLSVLEACYGEPLTAAARRLGVSNTMLKKLCRRYGIQRWPHRQIRSIEKEVQKHMQARAQATSAVDIAACDERIALLQKKRAIVVKTASCGLNASLRSAIFMARP 205          
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A835Z1M5_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.280e-23
Identity = 50/109 (45.87%), Postives = 76/109 (69.72%), Query Frame = 1
Query:   28 AKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354
            A  + + +L+ FY+VPL   A+EL +SLT+LKK+CR+YGI+RWPHRQ+ S+NKS  +L E+I GA+  +  A L+++   L  K+ L+ + AS+GL   + NA+F A P
Sbjct:   11 ADNITLELLQSFYNVPLAELAKELGLSLTLLKKICRKYGIQRWPHRQIRSINKSAQELTERINGATSHEERAELQSQLHLLEKKKRLVTRGASSGLQSALRNALFLANP 119          
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: H6WBB7_VAULI (Putative NIN-like transcription factor n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB7_VAULI)

HSP 1 Score: 99.8 bits (247), Expect = 1.250e-22
Identity = 49/117 (41.88%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    4 KRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354
            ++ T++   + + + +L+ +Y+VPL   A+EL +SLT+LKK+CR++GI+RWPHRQ+ S+NK++  L E+I   +     A LR + G L  KR L+ K AS+GL   + NA+F A P
Sbjct:    3 RQSTTQIEPEEITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSINKNIQDLNERINSVNSPDEHAELRNQIGLLEKKRRLVTKGASSGLHTAMRNAIFLANP 119          
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: D7FN15_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN15_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.490e-21
Identity = 45/111 (40.54%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    1 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLN 333
            SKR+   ++AKR+PV ++ E+++ PL ++A  + +S+T LK+LCR++G+KRWPHRQ+S LN++LG LE +   A  ++  AA+  +   L  +RE+II+ A    D    N
Sbjct:   56 SKREVLADIAKRIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRTLGDLEAQHDAARGEEEIAAVEEELRQLHRRREVIIERAFESDDESTRN 166          
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A6H5KFL8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL8_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.100e-20
Identity = 43/101 (42.57%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTA 303
            SKR+   ++AKR+PV ++ E+++ PL ++A  + +S+T LK+LCR++G+KRWPHRQ+S LN++LG LE +   A  ++  AA+  +   L  +RE+II+ A
Sbjct:   57 SKREVLADIAKRIPVELMREYFNYPLRVSAEAMHISVTTLKRLCRRHGVKRWPHRQISGLNRALGDLEAQHDAARGEEEIAAVEEELRQLHRRREVIIERA 157          
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A835YTG3_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.020e-19
Identity = 46/109 (42.20%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   28 AKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 354
            A ++ + +L+ +Y+VPL   A+EL +SLT+LKK+CR++GI+RWPHRQ+ SLNK+  +L+E+   A   +  A + A+   L  K+ L+ + AS+GL   + NA+F A P
Sbjct:    8 ADQITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSLNKTAQELKERAQCALTAEEHAEIEAQLQLLEKKKRLVTRGASSGLQSALRNALFLANP 116          
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Match: A0A835YW93_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW93_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.980e-19
Identity = 38/67 (56.72%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    7 RQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEE 207
            RQ+S EV++R+ ++VLE  Y++PL  AA++L VS TMLKKLCR+YGI+RWPHRQ+ S++K + K +E
Sbjct:    2 RQSSREVSQRVSLAVLEGCYNIPLTAAAKKLKVSNTMLKKLCRRYGIQRWPHRQIRSIDKEMQKHQE 68          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129502 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7T4_9STRA3.070e-74100.00RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A6H5KE17_9PHAE4.920e-3865.25RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FS12_ECTSI6.110e-3865.25Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A836CMG7_9STRA2.310e-2348.28RWP-RK domain-containing protein n=1 Tax=Tribonema... [more]
A0A835Z1M5_9STRA4.280e-2345.87Putative NIN-like transcription factor n=1 Tax=Tri... [more]
H6WBB7_VAULI1.250e-2241.88Putative NIN-like transcription factor n=1 Tax=Vau... [more]
D7FN15_ECTSI1.490e-2140.54Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5KFL8_9PHAE4.100e-2042.57RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YTG3_9STRA1.020e-1942.20Putative NIN-like transcription factor n=1 Tax=Tri... [more]
A0A835YW93_9STRA7.980e-1956.72RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:1297951..1298304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129502|gw1.17.12.1
DescriptionRWP-RK domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E5A6@1|root,2SC46@2759|Eukaryota
Evalue6.37e-18
Seed ortholog2880.D8LTZ5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNIN-like transcription factor
Ec32 orthologEc-12_006900.1
TranscriptId129824
TrackFilteredModels1
ProteinId129502
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129502gene_3481Tribonema minus UTEX_B_3156 geneContig_17 1297951..1298304 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3481_1exon_3481_1Tribonema minus UTEX_B_3156 exonContig_17 1297951..1298304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3481CDS_3481Tribonema minus UTEX_B_3156 CDSContig_17 1297951..1298304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129502Trimin1|129502|gw1.17.12.1Tribonema minus UTEX_B_3156 polypeptideContig_17 1297951..1298304 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3481 ID=mRNA_3481|Name=jgi.p|Trimin1|129502|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_17:1297951..1298304- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCAAGCGGCAGACGAGCGAGGAGGTGGCCAAGCGCCTGCCCGTGAGCGT
GCTCGAGGAGTTCTACCACGTGCCGCTGAACATTGCGGCGCGCGAGCTCA
GCGTGAGCCTCACCATGCTCAAGAAGCTGTGTCGCCAGTACGGCATCAAG
CGCTGGCCGCACCGCCAGGTGTCGTCGCTCAACAAGTCGCTCGGCAAGCT
GGAGGAGAAGATCCTGGGCGCGTCCGACGACAAGGCCGCCGCCGCGCTGC
GCGCCAAGGCGGGGCCGCTGCGCACCAAGCGCGAGCTCATCATCAAGACG
GCGAGCGCGGGGCTCGACCCGGACGTCCTCAACGCCGTCTTCGCCGCGCG
CCCG
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protein sequence of jgi.p|Trimin1|129502

>Trimin1|129502|gw1.17.12.1 ID=Trimin1|129502|gw1.17.12.1|Name=jgi.p|Trimin1|129502|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp
SKRQTSEEVAKRLPVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIK
RWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKT
ASAGLDPDVLNAVFAARP
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mRNA from alignment at Contig_17:1297951..1298304-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3481 ID=mRNA_3481|Name=jgi.p|Trimin1|129502|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_17:1297951..1298304- (Tribonema minus UTEX_B_3156 )
AGCAAGCGGCAGACGAGCGAGGAGGTGGCCAAGCGCCTGCCCGTGAGCGT GCTCGAGGAGTTCTACCACGTGCCGCTGAACATTGCGGCGCGCGAGCTCA GCGTGAGCCTCACCATGCTCAAGAAGCTGTGTCGCCAGTACGGCATCAAG CGCTGGCCGCACCGCCAGGTGTCGTCGCTCAACAAGTCGCTCGGCAAGCT GGAGGAGAAGATCCTGGGCGCGTCCGACGACAAGGCCGCCGCCGCGCTGC GCGCCAAGGCGGGGCCGCTGCGCACCAAGCGCGAGCTCATCATCAAGACG GCGAGCGCGGGGCTCGACCCGGACGTCCTCAACGCCGTCTTCGCCGCGCG CCCG
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Coding sequence (CDS) from alignment at Contig_17:1297951..1298304-

>mRNA_3481 ID=mRNA_3481|Name=jgi.p|Trimin1|129502|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_17:1297951..1298304- (Tribonema minus UTEX_B_3156 )
AGCAAGCGGCAGACGAGCGAGGAGGTGGCCAAGCGCCTGCCCGTGAGCGT
GCTCGAGGAGTTCTACCACGTGCCGCTGAACATTGCGGCGCGCGAGCTCA
GCGTGAGCCTCACCATGCTCAAGAAGCTGTGTCGCCAGTACGGCATCAAG
CGCTGGCCGCACCGCCAGGTGTCGTCGCTCAACAAGTCGCTCGGCAAGCT
GGAGGAGAAGATCCTGGGCGCGTCCGACGACAAGGCCGCCGCCGCGCTGC
GCGCCAAGGCGGGGCCGCTGCGCACCAAGCGCGAGCTCATCATCAAGACG
GCGAGCGCGGGGCTCGACCCGGACGTCCTCAACGCCGTCTTCGCCGCGCG
CCCG
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