mRNA_3429 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347954
Unique NamemRNA_3429
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|347954 vs. uniprot
Match: A0A836CJW5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW5_9STRA)

HSP 1 Score: 550 bits (1417), Expect = 8.340e-197
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 1
Query:    1 MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPKAVHARACELAGYWDAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAVSRYCAAAGDCGRADEACELARAHGQMAAGXXXXXXXXXXXXXXXGALPPADALRVARYYEAQRGEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGVPKDPNRIHRLYLALGNYQQAANSAIVIAGREQAHTVLYKAIRRLENRAWRGEHEGPARMLLRVALPRAHGRRADELRAGLRESAFEYASLAIDFRVGAGSVLLAAKIAG 921
            MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPKAVHARACELAGYWDAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAVSRYCAAAGDCGRADEACELARAHGQMAAGXXXXXXXXXXXXXXXGALPPADALRVARYYEAQRGEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGVPKDPNRIHRLYLALGNYQQAANSAIVIAGREQAHTVLYKAIRRLENRAWRGEHEGPARMLLRVALPRAHGRRADELRAGLRESAFEYASLAIDFRVGAGSVLLAAKIAG
Sbjct:    1 MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPKAVHARACELAGYWDAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAVSRYCAAAGDCGRADEACELARAHGQMAAGXXXXXXXXXXXXXXXGALPPADALRVARYYEAQRGEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGVPKDPNRIHRLYLALGNYQQAANSAIVIAGREQAHTVLYKAIRRLENRAWRGEHEGPARMLLRVALPRAHGRRADELRAGLRESAFEYASLAIDFRVGAGSVLLAAKIAG 307          
BLAST of jgi.p|Trimin1|347954 vs. uniprot
Match: A0A835ZAW6_9STRA (WD repeat membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW6_9STRA)

HSP 1 Score: 338 bits (867), Expect = 1.330e-102
Identity = 237/374 (63.37%), Postives = 250/374 (66.84%), Query Frame = 1
Query:    1 MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPKAV-------HARACELAGYWDAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAVSRYCAAAGDCG----------RADEACELARAHGQMAA---GXXXXXXXXXXXXXXXGALPPADALRVARYYEAQ-------------------------RGEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGVPKDPNRIHRLYLALGNYQQAANSAIVIAGREQ-------AHTVLYKAIRRLENR------------------------AWRGEHEGPARMLLRVA--LPRAHGRRADEL--------RAGLRESAFEYASL 864
            MRQPAEAAALWEASGH  FERALAIYLAARNMPQAA++APK         +ARACE AG WDAAAAAHE ARDMDAVVRLCLDQLDQPE A A VRATASAAGAE VSRYCAAAGD G          RADEA ELARAHGQMAA        XXXXXXXXXXXGALPPADALRVARYYEAQ                         RGEAEV AAID+VGRARND LTHTLID LMG T+GVPKDPN I+RLYLALGNYQQAA +AI+IA +EQ       AH VLY+AIRRLE++                        A RGEHEG ARMLLRVA    R        L        RAGLRESAFEYAS+
Sbjct:  996 MRQPAEAAALWEASGH--FERALAIYLAARNMPQAASVAPKVTLPKLLGQYARACEAAGQWDAAAAAHERARDMDAVVRLCLDQLDQPERAFAIVRATASAAGAETVSRYCAAAGDWGGAIEFLLMAQRADEAFELARAHGQMAAFVGARARGXXXXXXXXXXXGALPPADALRVARYYEAQGELGAAGRHYAACGQHHRALKLLLQRGEAEVAAAIDVVGRARNDMLTHTLIDYLMGETDGVPKDPNHIYRLYLALGNYQQAAKTAIIIARQEQDLGNYREAHAVLYEAIRRLEDQRARVPQALRRPFLLLHSYTLAKRLARRGEHEGAARMLLRVARSASRFPAHTVAVLTSCVIECQRAGLRESAFEYASV 1367          
BLAST of jgi.p|Trimin1|347954 vs. uniprot
Match: D7FIK0_ECTSI (WD repeat membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK0_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 2.460e-59
Identity = 157/370 (42.43%), Postives = 201/370 (54.32%), Query Frame = 1
Query:    1 MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPKAV-------HARACELAGYWDAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAVSRYCAAAGD----------CGRADEACELARAHGQMAAGXXXXXXXXXXXXXXXGALPPADALRVARYYEA-------------------------QRGEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGVPKDPNRIHRLYLALGNYQQAANSAIVIAGREQ-------AHTVLYKAIRRLENRAW------------------------RGEHEGPARMLLRVA----------LPRAHGRRADELRAGLRESAFEYAS 861
            M+QPAEAAA++E  G  Q  RA AIY+AA+++ +AA + P+         +A+ACE+ G W+ A  A+E ARDMD+VVRLCLDQLDQ   A A VR  AS+ GAE VSR+C  AGD            R  +A  LA++H +M                    + P DAL VAR+YE                          Q G+ EV AAI +VG+ARND LTHTLID LMG T+GVPKDPN I+RLY+ALG+Y QAA +AI+IA +EQ       AH +L++ IR+LE++                          RG+HEG ARMLLRVA          +P       +  R+GLR SAFEYAS
Sbjct:  958 MKQPAEAAAMYELGG--QDHRAAAIYVAAKDLDKAATVMPRVTQPKLLGQYAKACEITGRWEQALEAYERARDMDSVVRLCLDQLDQSHRAFAIVRENASSTGAEMVSRHCQDAGDWEGAIEFLLMAKRTADAFSLAKSHARM----------DIFTKVLGTDVSPDDALSVARFYEGKHELGKAGKFYSLCGQHHRALKLFLQCGKQEVEAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGSYSQAAKTAIIIAKQEQDLGNYKVAHGILFETIRQLEDQGIHVPQSLRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYAS 1315          
BLAST of jgi.p|Trimin1|347954 vs. uniprot
Match: A0A7S2CHE3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHE3_9STRA)

HSP 1 Score: 188 bits (478), Expect = 9.650e-52
Identity = 140/361 (38.78%), Postives = 186/361 (51.52%), Query Frame = 1
Query:    1 MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPKAV-------HARACELAGYWDAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAVSRYCAAAGDCGRADEACELARAHGQMAAGXXXXXXXXXXXXXXXGALPPADALRVARYYEAQR-------------------------GEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGVPKDPNRIHRLYLALGNYQQAANSAIVIAGREQ-------AHTVLYKAIRRLENRAWR------------------------GEHEGPARMLLRVA----------LPRAHGRRADELRAGLRESAFEYASL 864
            M+Q A+AA L+E     Q+ERA AI++  +N+ QAA I PK         +A  CE  G ++ A  ++E ARDMDAVVRLCLDQL  PE A   VRAT+S+ GA+ V+ YC   G+   A E   +A+   +  A                  + P +A  VA +YE Q                          GE EV  AI++VG+ARND LTHTLID LMG T+GVPK+P  I+RLYLALGNY QAA +AI+IA +EQ       AH+++Y+ IR+L+++  R                          HEG ARMLLRVA          +P       +  RAG ++SA EYA +
Sbjct:   60 MKQSADAAVLYELGE--QYERAAAIFIKTKNLVQAARIMPKVTQPKLHSEYALKCEKDGQFEEAVRSYEAARDMDAVVRLCLDQLSTPERAFEIVRATSSSTGAQLVAHYCQREGNFRGAIEFLLMAKCSEEAFALAKTHDCMDVYTKVLGDGIGPEEAQSVASFYEGQHELGQAGHFYSLCGQYARALKLFLQCGEKEVDRAIEVVGKARNDMLTHTLIDFLMGETDGVPKEPFHIYRLYLALGNYAQAAKTAIIIARQEQDLGKYRQAHSIIYETIRQLQDQKVRVPQSLRRPFTLLHSYILVKKLIKHQNHEGAARMLLRVAKNISKFPNHKVPILTSTVIESFRAGRKQSALEYAKM 418          
BLAST of jgi.p|Trimin1|347954 vs. uniprot
Match: A0A6H5KE11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE11_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.730e-46
Identity = 156/443 (35.21%), Postives = 200/443 (45.15%), Query Frame = 1
Query:    1 MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPKAV-------HARACELAGYW-------------------------------------------------------------------------DAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAVSRYCAAAGD----------CGRADEACELARAHGQMAAGXXXXXXXXXXXXXXXGALPPADALRVARYYEA-------------------------QRGEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGVPKDPNRIHRLYLALGNYQQAANSAIVIAGREQ-------AHTVLYKAIRRLENRAW------------------------RGEHEGPARMLLRVA----------LPRAHGRRADELRAGLRESAFEYAS 861
            M+QPAEAAA++E  G  Q  RA AIY+AA+++ +AA + P+         +A+ACE+ G                                                                           + A  A+E ARDMD+VVRLCLDQLDQ   A A VR  AS+ GAE VSR+C  AGD            R  +A  LA++H +M                    + P DAL VAR+YE                          Q G+ EV AAI +VG+ARND LTHTLID LMG T+GVPKDPN I+RLY+ALG+Y QAA +AI+IA +EQ       AH +L++ IR+LE++                          RG+HEG ARMLLRVA          +P       +  R+GLR SAFEYAS
Sbjct:  264 MKQPAEAAAMYELGG--QDHRAAAIYVAAKDLDKAATVMPRVTQPKLLGQYAKACEITGRCGGCRKRSSGQARRSVASPLATGTMFCEGESTSEDMKSDVSLSKPPTSASQKGRERLAINLAPCFDPGLVNIRLEQALEAYERARDMDSVVRLCLDQLDQSHRAFAIVRENASSTGAEMVSRHCQDAGDWEGAIEFLLMAKRTADAFNLAKSHARM----------DIFTKVLGTDVSPDDALSVARFYEGKHELGKAGKFYSLCGQHHRALKLFLQCGKQEVEAAIAVVGKARNDMLTHTLIDFLMGETDGVPKDPNYIYRLYMALGSYSQAAKTAIIIAKQEQDLGNYKVAHGILFETIRQLEDQGIHVPQALRRSFVLLHSYILVKKMVRRGDHEGAARMLLRVARSISRFPTHIVPVLTSTVIECQRSGLRNSAFEYAS 694          
BLAST of jgi.p|Trimin1|347954 vs. uniprot
Match: F0YFC0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFC0_AURAN)

HSP 1 Score: 177 bits (450), Expect = 2.150e-46
Identity = 136/335 (40.60%), Postives = 175/335 (52.24%), Query Frame = 1
Query:    1 MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPK-------AVHARACELAGYWDAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAVSRYCAAAGD----------CGRADEACELARAHGQMAAGXXXXXXXXXXXXXXXGALPPADALRVARYYEA-------------------------QRGEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGVPKDPNRIHRLYLALGNYQQAANSAIVIAGREQ-------AHTVLYKAIRRLENRAWR------------------------GEHEGPARMLLRVA 786
            M Q +EAA+L+E + H  FE+A AIY+   N  QAAAI  K       A +A+ACE AG    A  A+E A DMD+VVRL L  L+QPE A   VR T S+ GA+ V+R+C   GD            R+DEA  L++ H QM                   A+ P DAL VA++YEA                         Q GE EV  AI++VG+AR+D+LTHTLID LMG  +GVPKDPN I+RLYLALGN+ QAA +A++IA +EQ       AH +LY+   +LE +                           G+H+  ARMLLRVA
Sbjct:  904 MNQHSEAASLFELAEH--FEKAAAIYIRKLNFTQAAAIMHKVALPKLHAQYAKACEAAGKLGDAVKAYEVAHDMDSVVRLYLGNLNQPERAFEIVRKTESSDGAQLVARFCQQQGDFRGAIEFLLMAKRSDEAFNLSKLHSQMDV----------YTAVLGDAIAPDDALSVAQHYEAVHELGLAGQFYALCGQYPRALKLFIQCGEKEVHRAIEIVGKARSDSLTHTLIDFLMGEPDGVPKDPNYIYRLYLALGNFPQAAKTAVIIARQEQDLGSYKAAHAILYETTIQLEAQEVHVPQNLRKPFILLHSYLLVKKLIKAGDHDAAARMLLRVA 1226          
BLAST of jgi.p|Trimin1|347954 vs. uniprot
Match: A0A7S2W386_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W386_9STRA)

HSP 1 Score: 174 bits (440), Expect = 4.590e-45
Identity = 131/335 (39.10%), Postives = 174/335 (51.94%), Query Frame = 1
Query:    1 MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPKAV-------HARACELAGYWDAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAVSRYCAAAGDCGRA----------DEACELARAHGQMAAGXXXXXXXXXXXXXXXGALPPADALRVARYYEAQR-------------------------GEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGVPKDPNRIHRLYLALGNYQQAANSAIVIAGREQ-------AHTVLYKAIRRLENRAWR------------------------GEHEGPARMLLRVA 786
            M+Q +EAA L+E    W  +RA AIY+ ++N+ QA+AI  K         +A+ CE  G  + A  A+E  RDMD+VVRLCLDQL +PE A   VR T+S+ GA+ V++YC A G+   A          DEA +LA+AH  M                    + P +A  VA YYE Q                          GE +V  AID+VG+A+ND LTHTLID LMG ++GVPK+P  I+RLYLALGNY+QAA +A++IA +EQ       AH+ L+K IR L+    R                        G+H   AR+LLRVA
Sbjct:  832 MKQNSEAAELYEMGQQW--DRAAAIYIGSKNLSQASAIIDKVSQTKLLTEYAKRCEKEGQLEEAVKAYERGRDMDSVVRLCLDQLKRPERAFDIVRKTSSSTGAQHVAQYCRAEGNYRGAIEFLLMAKCYDEAFDLAKAHDCMEV----------YTTILDDGIGPDEANAVAVYYEGQHDLGKAGHFYSLCGQYARALRLFLQCGEKQVDRAIDVVGKAQNDMLTHTLIDFLMGESDGVPKEPVHINRLYLALGNYEQAARTAVIIARQEQDAGNYKGAHSTLFKTIRELDEHKVRVPQSLRRPFILLHSYTLVKKHVNRGDHALAARLLLRVA 1154          
BLAST of jgi.p|Trimin1|347954 vs. uniprot
Match: A0A7S4A1K5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1K5_9STRA)

HSP 1 Score: 164 bits (415), Expect = 9.840e-42
Identity = 128/335 (38.21%), Postives = 173/335 (51.64%), Query Frame = 1
Query:    1 MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPK-------AVHARACELAGYWDAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAVSRYCAAAGDCGRA----------DEACELARAHGQMAAGXXXXXXXXXXXXXXXGALPPADALRVARYYEA-------------------------QRGEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGVPKDPNRIHRLYLALGNYQQAANSAIVIAGREQ-------AHTVLYKAIRRLENR------------------------AWRGEHEGPARMLLRVA 786
            M Q +EAA L+E + HW  E+A AIY+   +  + A++ PK       A +A+ACE +  +  A  A+E A D+D+VVRL L+QL+ PE     VR T S+ GA  V+++C   GD   A          +EA ELA+ H Q+                   ++   DAL VA++YE                          + GE EV AAID+VG+ARNDALTHTLID LMG  +GVPKDPN I+RLY+ALGNY QAA +A++IA +EQ       AH +L++ I +L  +                        A RGE +  ARMLLRVA
Sbjct:  902 MNQHSEAAGLYEDAEHW--EKAAAIYIKKLDFSRCASVMPKVTLPKLHAQYAKACEASERFQEAVQAYENAHDLDSVVRLHLNQLNTPERGFDIVRRTQSSDGARLVAKFCQDHGDFKGAIEFLLMAKGTEEAFELAKLHNQVEK----------YTEVLGDSIRADDALNVAQHYEKINEPGLAGKYYALCNDYGRALKLFIKCGEKEVHAAIDIVGKARNDALTHTLIDFLMGEPDGVPKDPNYIYRLYIALGNYPQAAKTAVIIAKQEQELGNYAQAHAILHETIVKLREQKVHVPQALRHPFVLLHSYVLAGKLARRGEQDLAARMLLRVA 1224          
BLAST of jgi.p|Trimin1|347954 vs. uniprot
Match: A0A7S3JVG1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVG1_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.320e-41
Identity = 127/335 (37.91%), Postives = 175/335 (52.24%), Query Frame = 1
Query:    1 MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPKA-------VHARACELAGYWDAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAVSRYCAAAGD----------CGRADEACELARAHGQMAAGXXXXXXXXXXXXXXXGALPPADALRVARYYEAQR-------------------------GEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGVPKDPNRIHRLYLALGNYQQAANSAIVIAGREQ-------AHTVLYKAIRRL------------------------ENRAWRGEHEGPARMLLRVA 786
            M Q  EAAA++EA  +  FE+A AIY+   N   AAAI  K         +A+ACE A  +  AAAA+E A DMD+VVRL L QL++PE AL  VR T S+ GA+ V+R+C   GD            R++EA EL++AHG M                    + P DAL VA+++E+                           GE+++  AI++VG+A +D+LTH LID LMG  +G+PKDPN I+RLY+ALGN+ QAA +A++IA +EQ       AH VLY+   +L                          +  RG+H+  AR+LLRVA
Sbjct:  707 MSQHVEAAAMYEAGEY--FEKAAAIYIEQHNFTAAAAIMHKVNLPKLHLQYAKACESAEKFLQAAAAYESAGDMDSVVRLYLHQLEKPEKALEIVRRTHSSGGAQLVARFCQQEGDFRGAIEFLLMAQRSEEAFELSKAHGHMEL----------YTSVLGDRMSPDDALNVAKHFESIHESALAGKFYAVCGQYAKALKLYMHCGESQLNNAIEIVGKAHSDSLTHKLIDFLMGEPDGIPKDPNYIYRLYIALGNFTQAARTAVIIARQEQELGNYKQAHAVLYETNIQLIAHGVRVPQSLRQAFILLHSYILVMKKVKRGDHQTAARLLLRVA 1029          
BLAST of jgi.p|Trimin1|347954 vs. uniprot
Match: A0A836CLM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLM3_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.280e-40
Identity = 125/246 (50.81%), Postives = 140/246 (56.91%), Query Frame = 1
Query:    1 MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPKAV---HARACELAGYWDAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAVSRY---CAAAGDCG----------RADEACEL--ARAHGQMAAGXXXXXXXXXXXXXXXGALPPADALRVARYYEAQRGEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGV--PKDPNRIHRLYLALGNYQQAANSAIVIA 678
            MRQ  EAAALW+ASG   FERALAI+LAARNMP  A      V   H R              HE A DMDAVVRLCLDQLDQPE A A V  T SAAGA++VSRY   CA AG+ G          RAD+A EL  A+AH QMAA                G L  A     A     QR EAE  AA D+VG AR D LTHTLI  LMG T+G+   KD N I+ +YLALG Y+QAA +AI+ A
Sbjct:  151 MRQ--EAAALWDASG--LFERALAIFLAARNMPMHALRGGGPVPVGHGRGN-----------VHERAHDMDAVVRLCLDQLDQPERAFAIVSTTTSAAGAKSVSRYRSDCATAGNWGGAIEFLLMAQRADDAFELSLAQAHEQMAA-----------VVGAQGGLGAAGRHHRALKLLLQRSEAEAAAARDVVGGARTDMLTHTLIGYLMGETDGIFNLKDLNHIYCVYLALGKYEQAAKTAIITA 370          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347954 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJW5_9STRA8.340e-197100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAW6_9STRA1.330e-10263.37WD repeat membrane protein n=1 Tax=Tribonema minus... [more]
D7FIK0_ECTSI2.460e-5942.43WD repeat membrane protein n=1 Tax=Ectocarpus sili... [more]
A0A7S2CHE3_9STRA9.650e-5238.78Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6H5KE11_9PHAE1.730e-4635.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YFC0_AURAN2.150e-4640.60Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2W386_9STRA4.590e-4539.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4A1K5_9STRA9.840e-4238.21Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S3JVG1_9STRA1.320e-4137.91Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A836CLM3_9STRA5.280e-4050.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:878562..881864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347954|estExt_Genemark1.C_Ctg_170117
BRITEko00000,ko03036
KEGG koko:K19671
Preferred nameFAP66
Descriptionmyotome development
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2247@1|root,KOG2247@2759|Eukaryota
Evalue4.03e-60
Seed ortholog2880.D7FIK0
Hectar predicted targeting categoryother localisation
TranscriptId348276
TrackFilteredModels1
ProteinId347954
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347954gene_3429Tribonema minus UTEX_B_3156 geneContig_17 878562..881864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347954Trimin1|347954|estExt_Genemark1.C_Ctg_170117Tribonema minus UTEX_B_3156 polypeptideContig_17 878562..881864 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3429_9exon_3429_9Tribonema minus UTEX_B_3156 exonContig_17 878562..878624 -
exon_3429_8exon_3429_8Tribonema minus UTEX_B_3156 exonContig_17 879000..879121 -
exon_3429_7exon_3429_7Tribonema minus UTEX_B_3156 exonContig_17 879205..879253 -
exon_3429_6exon_3429_6Tribonema minus UTEX_B_3156 exonContig_17 879816..880019 -
exon_3429_5exon_3429_5Tribonema minus UTEX_B_3156 exonContig_17 880091..880193 -
exon_3429_4exon_3429_4Tribonema minus UTEX_B_3156 exonContig_17 880225..880274 -
exon_3429_3exon_3429_3Tribonema minus UTEX_B_3156 exonContig_17 880309..880401 -
exon_3429_2exon_3429_2Tribonema minus UTEX_B_3156 exonContig_17 881140..881256 -
exon_3429_1exon_3429_1Tribonema minus UTEX_B_3156 exonContig_17 881742..881864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3429CDS_3429Tribonema minus UTEX_B_3156 CDSContig_17 881742..881864 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3429 ID=mRNA_3429|Name=jgi.p|Trimin1|347954|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=924bp|location=Sequence derived from alignment at Contig_17:878562..881864- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCAGCCCGCGGAGGCGGCGGCGCTGTGGGAGGCAAGCGGCCACTG
GCAGTTCGAGAGGGCGCTCGCGATCTACCTGGCGGCGCGCAACATGCCGC
AGGCGGCAGCGATAGCGCCGAAGGCAGTGCACGCGCGCGCGTGTGAGTTG
GCGGGCTATTGGGACGCGGCCGCGGCGGCGCACGAGTGCGCGCGCGACAT
GGACGCCGTCGTGCGCCTGTGCCTCGACCAACTGGACCAGCCGGAGCACG
CCTTAGCGACCGTGCGCGCGACTGCGAGCGCCGCGGGCGCCGAGGCGGTC
TCGCGCTACTGCGCGGCTGCCGGCGACTGCGGCCGCGCGGACGAGGCGTG
CGAGCTGGCGCGCGCGCATGGGCAGATGGCGGCTGGCGGCGGAGGCGGCG
GCGGCGGCGGCGGTGGCGGCGCGGCGGCGGCAGGGGCGCTGCCGCCGGCG
GACGCGCTGCGCGTGGCGCGATATTACGAGGCGCAGCGCGGCGAGGCGGA
GGTCAGGGCGGCGATCGATATGGTCGGGCGCGCGCGCAATGACGCGCTCA
CGCACACCCTCATCGACTCTCTCATGGGCGCGACGGAGGGCGTCCCCAAG
GACCCCAACCGCATCCACCGCCTGTACCTCGCGCTCGGCAACTACCAGCA
GGCGGCCAATTCGGCCATCGTCATTGCAGGCCGGGAGCAGGCGCACACCG
TCCTCTACAAGGCAATACGGCGCCTGGAGAATCGCGCGTGGCGCGGCGAG
CACGAGGGCCCGGCGCGCATGCTGCTGCGCGTCGCGCTTCCCCGCGCACA
CGGTCGCCGTGCTGACGAGCTGCGCGCGGGCCTGCGCGAGAGCGCATTCG
AGTACGCGAGCCTCGCAATTGACTTCCGAGTCGGCGCGGGATCTGTGCTG
CTAGCAGCCAAGATAGCTGGCTGA
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protein sequence of jgi.p|Trimin1|347954

>Trimin1|347954|estExt_Genemark1.C_Ctg_170117 ID=Trimin1|347954|estExt_Genemark1.C_Ctg_170117|Name=jgi.p|Trimin1|347954|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=308bp
MRQPAEAAALWEASGHWQFERALAIYLAARNMPQAAAIAPKAVHARACEL
AGYWDAAAAAHECARDMDAVVRLCLDQLDQPEHALATVRATASAAGAEAV
SRYCAAAGDCGRADEACELARAHGQMAAGGGGGGGGGGGGAAAAGALPPA
DALRVARYYEAQRGEAEVRAAIDMVGRARNDALTHTLIDSLMGATEGVPK
DPNRIHRLYLALGNYQQAANSAIVIAGREQAHTVLYKAIRRLENRAWRGE
HEGPARMLLRVALPRAHGRRADELRAGLRESAFEYASLAIDFRVGAGSVL
LAAKIAG*
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mRNA from alignment at Contig_17:878562..881864-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3429 ID=mRNA_3429|Name=jgi.p|Trimin1|347954|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3303bp|location=Sequence derived from alignment at Contig_17:878562..881864- (Tribonema minus UTEX_B_3156 )
ATGCGCCAGCCCGCGGAGGCGGCGGCGCTGTGGGAGGCAAGCGGCCACTG GCAGTTCGAGAGGGCGCTCGCGATCTACCTGGCGGCGCGCAACATGCCGC AGGCGGCAGCGATAGCGCCGAAGGTGCGATGCGCTGCACACGCCTTCTCC CCACCAACCCCCCCCCCTACTTGAATGGGACAAGGGCCTTTTTGCCGCTG CTCGGTGAGTTGGCGTTTGCAGTGCCTGTTTGAGTGTGGGCAGAGGGCCG GTGCTTGTCACTACTGACTGCGCAGAGCGCCGTCGCGCTGCGCGCTATGT CACGGTGCCGCATCATGGTCGCGTGTCATCGCCCTCTGCACCCTGTTGTG CAGCTTGAGACAGTTTCGGGCGCCAGCTTCCTGCCGGGCTGACTGCCATG GGGAGTGCACCCTACGGTGCTCAGAGCCGAGCATTCACGTCTCACAGAGC ACACAATGCCCCCCCTTCTACCCCCCCCCGCCCGCCCTTCTCCTCCCCGA GCATTCACGTTCCGCCGAGCACAATGTCTTTTTCTAACCTCGACAACCCC CCCCCCCCTCTCTTTCTCGCCTCCGTTCCGTGCAGGTGACGCTGCCCATG CTGCTGAGGCAGTGCACGCGCGCGCGTGTGAGTTGGCGGGCTATTGGGAC GCGGCCGCGGCGGCGCACGAGTGCGCGCGCGACATGGACGCCGTCGTGCG CCTGTGCCTCGACCAACTGGACCAGGTGACTCATCCTCCCCCTTCATTGC GGTGTGCCTGGTCAGCCCGGCAGCGCACGGATCGCCCCCCCCCCCCCCCC TTCTATTTGTGTCTCTGGCAAACACCGCAGCGCAGGAGAGTGCTCCCGCT TCAGCAGCAGCGTGCTCAGGTGCCTGCAAACCTCGTTGCCGCTGGTGCGT GCTGAGCACTGCTGCACGGCACCCCACCTACCTACCTCACTTACCCGAAT GCGTGCGGCGCGCGTCAGCTGGGCGTTAGTGCTCAGATGGCAGGCGTGTT GACGGCGCGTTGTGGACGCGCTGTGGTGCGGCGGTGGCCTGGGCAGAGCT GCGCACATACCGCTCCTGATCCGATGCGTGCAATGGTGTGATAAAACTTG TTGAAGAACGAGGTACATGATAGAGCGCTTGCTGCGCCGCGCCCACTCTA CCCCCATGTCAGGTTCACTCTCTCGCAGCGCACTGCAGCGTCACCCAGCG CCGTGCATGGTGCACTTGAAGTGTGCGGCTGTTCGACGCCTGCGCGCTGC TGCAGCAGCAGCCGGCAAAAGTTGCGCCTTTGCCGGAATTCGGCAGCGGT GCAGCACTCACCCTCTCAGCAAACCCTCACAATAGCTCGCCCGTTGTGCA CCGACGCCCCCCCTCCTCCCCCCCGCTGCTGCGCATCATGCGCCACTCTC ACGCGTACTCGCCGCCGCGCCACCGTCACCGCCGCCGCCGCCACCGCGCC ACCGCCGCCGCAGCCGGAGCACGCCTTAGCGACCGTGCGCGCGACTGCGA GCGCCGCGGGCGCCGAGGCGGTCTCGCGCTACTGCGCGGCTGCCGGCGAC TGCGGCGTCATTGAATTCCTGCTCATCATCATTGGCGCAGCGCGCGGACG AGGCGTGCGAGCTGGCGCGCGCGCATGGGCAGATGGCGGCGTTCGTCGGC GCACGCGTGCGACGGCGGCAGTGGCGGCGGAGGCGGCGGCGGCGGCGGCG GTGGCGGCGCGGCGGCGGCAGGGGCGCTGCCGCCGGCGGACGCGCTGCGC GTGGCGCGATATTACGAGGCGCAGGTGGACCTGGGCGCGGCAGGGCGGCA CTACGCGGCGTGGGGGCAGCACCACTGCGGGCTCTGCTGCTGCAGCGCGG CGAGGCGGAGGTCAGGGCGGCGATCGATATGGTCGGGCGCGCGCGCAATG ACGCGCTCACGCACACCCTCATCGACTCTCTCATGGGCGCGACGGAGGGC GTCCCCAAGGACCCCAACCGCATCCACCGCCTGTACCTCGCGCTCGGCAA CTACCAGCAGGCGGCCAATTCGGCCATCGTCATTGCAGGCCGGGAGCAGG TGCGCGCGCATGCAATTTTGCTGTATGCGTGTGGGGTGGCGGCGCCGCTC GTCATGGAGCGGCGGCCGCGCGTCGCGCGCGTCATTGTGGTGCCATGACG CTGTCTAGCGCGGTCCTATGTCAGATATGTGTCGGTCAGCGCGTTGCTGC TCGTGGTGTTGTGCTGCGTGTGGTCGCCACGGGAGACGGCTGCCGTCATC GCTGGGTCGTTGAGACTGCTTTGCGCTGCTACATAGGCGCAGGACGGTTT CTCGTGTACTCCTTTTGACGGACAGTCCGCGTAACCTTGCCCGCAAGCCT GACCGTGCGCGCGGCAGAACCTAGTAGTACGATGACCATGGTGCACTTTC AACGCATGGCAGCACTCTGCCTAATCCGCCCTTGCTCGGCCACCTGACAA TGGATGCAGTGCTGCGCCTGACCCTATCCTGACCCTGACCCTAGCCCCAA CTAAACCCTATTCTCAACCTATCCGTTACCCCGACCATAACCAAACCGTA ACTAATTCTATTCCTAACCCTCAGGCTCATCGCTGCGCGCGCCTCAGGCA AAGACCGTGAGGCGCACACCGTCCTCTACAAGGCAATACGGCGCCTGGAG AATCGCGCGTGTGCGTGTGGCAGGCGCTATGGCGCCCGTTCCTGCTGCAC TCGCACGCTCGCCAAGCGCCTTGCGCGGCGCGGCGAGCATAAGGGCGCGG CGAGCACGAGGGCCCGGCGCGCATGCTGCTGCGCGTCGCGCTTCCCCGCG CACACGGTCGCCGTGCTGACGAGCTGCGCGCGGGCCTGCGCGAGAGCGCA TTCGAGTACGCGAGCGTGCTGCCGGAGCACCTTGGGTTAGGGTTAGGGCT AGGGTTAGGGTTGCGGTTGCGGAGGGGGAGTGTGGGTGGGAGAGTGGGGG GGGCATCTCGTGCAGATGCCGGGCAGGCAGGCAACCACCATAGCGAAATC ACTCCTGTGAGGTTTTGATGTTTCTTGCGGCTGCTGTAGCTGTCTGTAGC TGCTCTTGGTGAACTATCCTTTGTTGAAGAGAACTTCCCGAAACGCTTCA ACGCCAAATCGCAAATTTCTTTCATTTCTTTCGCTTCCGTGGCCTCTCCG GCAGATCTCCGGCAGGATTTTCCGGCAAGACCGCCGGTTTGGCAAGGGGG GAATCAGTCCAGAGGCAGCAGGCGCTGCTGCTGCGGGAAGCTCGCAATTG ACTTCCGAGTCGGCGCGGGATCTGTGCTGCTAGCAGCCAAGATAGCTGGC TGA
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Coding sequence (CDS) from alignment at Contig_17:878562..881864-

>mRNA_3429 ID=mRNA_3429|Name=jgi.p|Trimin1|347954|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=924bp|location=Sequence derived from alignment at Contig_17:878562..881864- (Tribonema minus UTEX_B_3156 )
ATGCGCCAGCCCGCGGAGGCGGCGGCGCTGTGGGAGGCAAGCGGCCACTG
GCAGTTCGAGAGGGCGCTCGCGATCTACCTGGCGGCGCGCAACATGCCGC
AGGCGGCAGCGATAGCGCCGAAGGCAGTGCACGCGCGCGCGTGTGAGTTG
GCGGGCTATTGGGACGCGGCCGCGGCGGCGCACGAGTGCGCGCGCGACAT
GGACGCCGTCGTGCGCCTGTGCCTCGACCAACTGGACCAGCCGGAGCACG
CCTTAGCGACCGTGCGCGCGACTGCGAGCGCCGCGGGCGCCGAGGCGGTC
TCGCGCTACTGCGCGGCTGCCGGCGACTGCGGCCGCGCGGACGAGGCGTG
CGAGCTGGCGCGCGCGCATGGGCAGATGGCGGCTGGCGGCGGAGGCGGCG
GCGGCGGCGGCGGTGGCGGCGCGGCGGCGGCAGGGGCGCTGCCGCCGGCG
GACGCGCTGCGCGTGGCGCGATATTACGAGGCGCAGCGCGGCGAGGCGGA
GGTCAGGGCGGCGATCGATATGGTCGGGCGCGCGCGCAATGACGCGCTCA
CGCACACCCTCATCGACTCTCTCATGGGCGCGACGGAGGGCGTCCCCAAG
GACCCCAACCGCATCCACCGCCTGTACCTCGCGCTCGGCAACTACCAGCA
GGCGGCCAATTCGGCCATCGTCATTGCAGGCCGGGAGCAGGCGCACACCG
TCCTCTACAAGGCAATACGGCGCCTGGAGAATCGCGCGTGGCGCGGCGAG
CACGAGGGCCCGGCGCGCATGCTGCTGCGCGTCGCGCTTCCCCGCGCACA
CGGTCGCCGTGCTGACGAGCTGCGCGCGGGCCTGCGCGAGAGCGCATTCG
AGTACGCGAGCCTCGCAATTGACTTCCGAGTCGGCGCGGGATCTGTGCTG
CTAGCAGCCAAGATAGCTGGCTGA
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