mRNA_3387 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|161513
Unique Name	mRNA_3387
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|161513 vs. uniprot
Match: A0A836CJ38_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ38_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.380e-50
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

Query:    1 MGLGCSTDAVDGAAAAGHLDVVRWLSEFRAEGGTRAAXXXXXXXXXXXXXXXXHEGCQWKPECTKNXXXXXXXXXXXDVAATLTPRRRXXXXXXXXXXXXXXXCRQVRFLHERRSEGCTRAAMDRACLHGHLHVAA 408
            MGLGCSTDAVDGAAAAGHLDVVRWLSEFRAEGGTRAAXXXXXXXXXXXXXXXXHEGCQWKPECTKNXXXXXXXXXXXDVAATLTPRRRXXXXXXXXXXXXXXXCRQVRFLHERRSEGCTRAAMDRACLHGHLHVAA
Sbjct:    1 MGLGCSTDAVDGAAAAGHLDVVRWLSEFRAEGGTRAAXXXXXXXXXXXXXXXXHEGCQWKPECTKNXXXXXXXXXXXDVAATLTPRRRXXXXXXXXXXXXXXXCRQVRFLHERRSEGCTRAAMDRACLHGHLHVAA 136

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|161513 vs. uniprot

BLAST of jgi.p|Trimin1|161513 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CJ38_9STRA	1.380e-50	100.00	Ankyrin repeat-containing domain protein n=1 Tax=T...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_17	contig	Contig_17:571998..576575 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|161513\|e_gw1.17.253.1
Hectar predicted targeting category	other localisation
TranscriptId	161835
Track	FilteredModels1
ProteinId	161513

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|161513	gene_3387	Tribonema minus UTEX_B_3156	gene	Contig_17 571998..576575 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|161513	Trimin1\|161513\|e_gw1.17.253.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_17 571998..576575 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3387_1	exon_3387_1	Tribonema minus UTEX_B_3156	exon	Contig_17 571998..572057 +
exon_3387_2	exon_3387_2	Tribonema minus UTEX_B_3156	exon	Contig_17 573056..573232 +
exon_3387_3	exon_3387_3	Tribonema minus UTEX_B_3156	exon	Contig_17 573871..574185 +
exon_3387_4	exon_3387_4	Tribonema minus UTEX_B_3156	exon	Contig_17 575284..575573 +
exon_3387_5	exon_3387_5	Tribonema minus UTEX_B_3156	exon	Contig_17 576389..576575 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3387	CDS_3387	Tribonema minus UTEX_B_3156	CDS	Contig_17 571998..572057 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_17:571998..576575+
coding sequence from alignment at Contig_17:571998..576575+

spliced messenger RNA

>mRNA_3387 ID=mRNA_3387|Name=jgi.p|Trimin1|161513|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_17:571998..576575+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTGGGCTGCAGCACGGACGCGGTGGACGGCGCCGCCGCCGCGGG
CCACCTGGATGTGGTGCGGTGGCTCTCCGAGTTCCGCGCGGAGGGCGGAA
CGCGCGCCGCAATGGACTACGCCGCTGCCGCGGGGCACCTGCACGTCGTG
CGCTACTTGCACGAGGGCTGCCAGTGGAAGCCGGAGTGCACCAAGAACGC
CATGAACTGGGCGGCAGCGGGGGGGCACCTGGATGTGGCTGCAACTCTGA
CTCCGCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGCTGCCGCCAGGTCCGCTTCCTCCACGAGCGCCGCAGCGAGGG
CTGCACGCGCGCGGCGATGGACCGCGCGTGCCTGCACGGCCACCTCCACG
TCGCCGCCTTTCTGCACGCGCACCGCGCCGAGGGGTGCACGCACGCGGCG
ATGCTCGGCGCCGCGGCGCGCGGCCACACCGCCGTGTGCCAGTGGCTGTA
CGCGCACACGGCGCTGCGCTGCTCGCCCTTCGGCATGGACAAGGCGGCAC
AGGGCGGCCATCTAGACCTGCTCAAGTGGCTGCACGCGCGCGGCGAGGCG
TGCACGACCAACGCCATGGACTACGCGGCGGCGTTCGGCGAGCTCGCGAC
GGTGCTGTGGCTGCACCTGCACAGGACGGAGGGCTGCACGGCGAGCGCGC
TAGAGTGGGCGGCAATCAACGGGCACCTCGCCACGGTGCGGTGGCTGCAT
GCAAACCGCACCGAGGGGTGCACACGGCGCGCCATGAACGGCGCCGCCGG
CAACGGGCACCTGGAGGTCGTCAAGTTCCTGCACTTCAACAGGCGCGAGG
GCGCGTCGCGCACCGCCATGGACGAGGCCGCGCGCAACGGCCACCTCGAG
GTCGTGCGGTGGCTGCGCGAGAACAGGGCGGAGGGCTGCAGCGAGCGCGC
CATGCAGGGCGCCGCGCAGAACGGCCACGTGGACGTGCTCGCGTACCTCC
AGGTACATGTGCGATTCAAACCATCGTAA

protein sequence of jgi.p|Trimin1|161513

>Trimin1|161513|e_gw1.17.253.1 ID=Trimin1|161513|e_gw1.17.253.1|Name=jgi.p|Trimin1|161513|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=343bp
MGLGCSTDAVDGAAAAGHLDVVRWLSEFRAEGGTRAAMDYAAAAGHLHVV
RYLHEGCQWKPECTKNAMNWAAAGGHLDVAATLTPRRRRRCRRRRRRRRR
RRRCRQVRFLHERRSEGCTRAAMDRACLHGHLHVAAFLHAHRAEGCTHAA
MLGAAARGHTAVCQWLYAHTALRCSPFGMDKAAQGGHLDLLKWLHARGEA
CTTNAMDYAAAFGELATVLWLHLHRTEGCTASALEWAAINGHLATVRWLH
ANRTEGCTRRAMNGAAGNGHLEVVKFLHFNRREGASRTAMDEAARNGHLE
VVRWLRENRAEGCSERAMQGAAQNGHVDVLAYLQVHVRFKPS*

mRNA from alignment at Contig_17:571998..576575+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3387 ID=mRNA_3387|Name=jgi.p|Trimin1|161513|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4578bp|location=Sequence derived from alignment at Contig_17:571998..576575+ (Tribonema minus UTEX_B_3156 )
ATGGGACTGGGCTGCAGCACGGACGCGGTGGACGGCGCCGCCGCCGCGGG
CCACCTGGATGTGAGTGCGGGGGGTGAACCGCATGTGTACTTCAAGTGTG
TACTGGTGTGTACTGCCTGTGCACTGAGGAGTCTGCGCAGCGGAGGGACT
CACGCCTCGCAGTGGCAGGTCTGGATGCCCTGCTAACTCCGGCTGTGAAC
CAGGAATGTACTGCTGTGTACTGGCATGTGTACTGGCATGTGCTGTTGCT
GCGACACCGCACGCGCTCAGCAAAAACGAATTTGCCTTGTGCACCCCCAT
GTCGTGCTCATGATGTGCAGTTCTGCGCAGCCGGCTGGCCGTCTGTTCAA
CCCTAACCCGATACACACCGTATAAGTGTGCGTGCACTGCTGCTGCGTTG
GCACTGACGCTGACTGTTTGTTGCCGAATCAATCACGGGCACGAGCTCAG
TTCCTCTAGAAGGCTCATCACAACAGTTGCGTCCACCGGCCAGTGACTGA
GTCGCTGCGTGCACCACACTCAGGCGCCACTGCAGAGCGCATGCAGCGCG
GCCGCCGCCGCCGCGGTTCTTTCTGCCATGTCGGACAGTAGCACTGCGAT
CTATGCCGGTCATGGTCTGCTGCAAGCCATCCCAGCGCCCTGAGCCTCTA
GCATCAGGAGCACATGAGAAGATCCCGCTGCGGCGCCTCGCGTGCTGGCT
CACAGCCACGCAGCGCGGACGCTGCGCGCAGGTCACGGCAGCCGCGCTCC
ACGCGCTGGGGGGGGGAGGGGGGGGGAGGGGGCAGCGGCGCGCGCACGCA
GCGCCGCACCCCCGGACCGTTCTCAACTTTACAATCACACAGCACGCACT
CTTTGAGGTGTCACGCGTCATCCGCAAAGCGGTGCGAGTGCTCGCAGCTC
GTTGCACTTGTGTCACTTGCTAACCCTCACGCTAACCCCAACCCTAACCC
TAATGCTAACCCTAACCGTAACCCAACCCCCATATCCTAACCCTAATCTC
AACCCTAACCCCAACCCTAGTATTCACCCTCATCCCAACGCCGGCACTGC
GGCCGCAGGTGGTGCGGTGGCTCTCCGAGTTCCGCGCGGAGGGCGGAACG
CGCGCCGCAATGGACTACGCCGCTGCCGCGGGGCACCTGCACGTCGTGCG
CTACTTGCACGAGGGCTGCCAGTGGAAGCCGGAGTGCACCAAGAACGCCA
TGAACTGGGCGGCAGCGGGGGGGCACCTGGATGTGGTGCGTGGGGTAGTG
TAGGGTATGGTAGGGTGAGGGTACGGTAGGTAGGGGCAGTGCTGGAGAGG
GTAGGGTAGGGTAGGGTAGGGTAGATAGGGTGGTGAGATGAGGGGTAGGG
TAGGGTAGGGTAGGATAGTATAGGGCGGGGCAAGGGTTGTGTACAGCAGG
GCAAGGGTACAGAATAAAATTGGGATGGGGTATCAGCGGCATCGTGCGCC
CGTGACCCGCCTTGCACGGTGCACGGACGAGTGGCACTTGCGCGTCGCAA
GCCAGCGCGCACACACACACACACACACACACCGTGCGGTTGACTGGTAC
GCTTCGGAGACTTTGTGCGGGCGCAGGGGCGCAGACGCAACGGGGGGGGT
GCGTGTGCGGCACTGACGTATGCATGCTTGTGTACGTGATTGTGTGTGAG
GCGGTAGGGAAGTATGCGCGCACGCTTGCAACGAGTCAGAGGTGCTGAAT
TGCACGCTCTTGCGTAGGCGCCGCTCCCACCTAATTGGCGTCAACGGCAG
GCCCGAGTATGCAGCTGTACTCATGTATAAACGCATATAGGTGCACACAC
ACACACACACACACACACACACACACACACACACACACACGTGCGGTTGC
CACAAGGCGGTCCGCGCCTCCAGGCTGCAACTCTGACTCCGCGCCGCCGT
CGCCGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCG
CCAGGTCCGCTTCCTCCACGAGCGCCGCAGCGAGGGCTGCACGCGCGCGG
CGATGGACCGCGCGTGCCTGCACGGCCACCTCCACGTCGCCGCCTTTCTG
CACGCGCACCGCGCCGAGGGGTGCACGCACGCGGCGATGCTCGGCGCCGC
GGCGCGCGGCCACACCGCCGTGTGCCAGTGGCTGTACGCGCACACGGCGC
TGCGCTGCTCGCCCTTCGGCATGGACAAGGCGGCACAGGTGGGTGCACGG
GGGGGGGGGAGCGTCGCCGGTTGAAGCCGTCGACGCATGCAGCAGCGCTC
AGTGTCGGCGCGTCGTTGTCGTCGCCGGCTGCGGCAGACTGCGCACCGGC
CGCCTGCTGCAGCGGCAGTTCCTTGCCTTGTGTGTCAAACACTCTTGTTG
TGCGCTGAGCGCTAGGGAGACGGGGGGGGGGGGCGGCGGGGGGGGGGAGC
CGGTGCGCTCCGCCTGTGTGCTATCGTCACTCGGTCAGCATGTTTTGGGA
GAGCTGGAGTGCTCTGCGTGGTGCGCGGCGATCAGGCCCAGCTCGTGGGT
TCTCGGTGTGGCAAGGATAATGTATGCGTGCACGTTCGTATGTTGTGAGG
TAGGGGTACATGAGGCAGCTGGCTACCTGGTTGAGAAAGTCTGACCAGAT
AGCGCGCATACCTTTTGGTATGCCCCTGTCACAAAAGGTATGCCCCTGAC
TTGGCAAGTCTTGCTTGTCGCCGCAGGCGTGCGCTCAGCACTGTTGTGTG
GTGCATGCGCAGCTGCATGCAGCAGTCTGCTGGCGCCGCTGCACCCAGCC
GCACTCGCTTACCCTCACTCCGACCCTAACCCTAGCCTGAACCCCCACCA
CCGTACACGTTGCGCGCATGCGCACGACCAACGCCATGGACGCATTCGCT
CACCCTCACTCTGACCCTAGCCTAGCCCACACCCCACCTTTAAATGTACC
CTACTTGGTGCGCGCAGGGCGGCCACCTGGACCTCCTCAAGTGGCTGCAC
GCGTGCAACGAGGCACGCATGACCAACACCATGGAGAACTCAGCCGCATT
CATTTGCCCTCACTCTGACCCTTACCCTAGCCCAACCCAACTTCAAACGT
GCGCACGACCAACGCCATGGACTACGCGGCCGCATTGACTCATCCTTACT
CTGAGCCTAACCCTAGTCCACGCCCCAACCCTAATGCTGTGCGCAGGGCG
GCCATCTAGACCTGCTCAAGTGGCTGCACGCGCGCGGCGAGGCGTGCACG
ACCACGCCATGGACTCATTGACCTACGATCGTCCTGACCCTAACCCTAGC
CCACACCCCAACCTCAACCCTTGTTGCTGTGCACAGGGCGGCCATCTAGA
CCTGCTCAAGTGGCTGCACGCGCGCGGCGAGGCGTGCACGACCAACGCCA
TGGACTACGCGGCGGCGTTCGGCGAGCTCGCGACGGTGCTGTGGCTGCAC
CTGCACAGGACGGAGGGCTGCACGGCGAGCGCGCTAGAGTGGGCGGCAAT
CAACGGGCACCTCGCCACGGTGCGGTGGCTGCATGCAAACCGCACCGAGG
GGTGCACACGGCGCGCCATGAACGGCGCCGCCGGCAACGGGCACCTGGAG
GTCGTCAAGTTCCTGCACTTCAACAGGTGCGCAAGGGGGGGGCAGAGGGG
GGCGCATCGGAAGTGCGCTGGCTGGGGACGCGTGGCGCTGCGCACTTGTG
TATGAGTTGTGTTGATATTGCTGGGGGTATTCTGGGGTTGTTTGTTTGTT
TTGATGCACGCACCGCATCGTCGACAGGTAGCGCGCATGAGGGTTGTGCG
TTTGAAGGTGATGTTGAACTATCAGAGGTGAAGTTGAAGTGGCAGGCCCA
GGCCAAGCGGTGCACGGTTCACGCCACTGCAGGGAGCAGCCGGTTTGTAT
CTTAGTCCTGAGGTTTGCGCGCAAATGCCTCAGAAATGTCAGCCCGAGCA
TGCCACGTCCACCCGAAAAATGCAGCGACCGGTGATCGCCGCCACAGCTC
TCAGGGCGCACATGCTGCCAAGTAAAGGCGGACGATGCGCACGCACGTGA
GAGCAGCGGCGCTCCGATGCGATTTGAGGCTTTAACGTGCGGGCCTACTG
CACTCCCAGCTGCCGCCCCCCTCCCCCCCACACACACTACAGAACACCTC
AGACGCGTCTCGCCATGACGATCCTTTGCGCACGGCACGTCACCAGCCGG
TCGCTACCGTGCCTGCACCGCCGCTCACGTGCACCCCCGCTACGCTGCGC
GCTTGCTCCGCATATGACTCATATGATATGAGTGACACAACTCCATTCCG
AGCCCCCCCCCCTTCCCCAAAGCATGCCATCAGGCGCATGTCAGCATGCT
GATCGCTCGAACGCGATTACATTCACGGCCGGGTCGCTACTGCGTCTCTC
ACGGCGCACGCACTCTCCGCTCCGCGCGCGCGCGCGTGCAGGCGCGAGGG
CGCGTCGCGCACCGCCATGGACGAGGCCGCGCGCAACGGCCACCTCGAGG
TCGTGCGGTGGCTGCGCGAGAACAGGGCGGAGGGCTGCAGCGAGCGCGCC
ATGCAGGGCGCCGCGCAGAACGGCCACGTGGACGTGCTCGCGTACCTCCA
GGTACATGTGCGATTCAAACCATCGTAA

Coding sequence (CDS) from alignment at Contig_17:571998..576575+

>mRNA_3387 ID=mRNA_3387|Name=jgi.p|Trimin1|161513|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1029bp|location=Sequence derived from alignment at Contig_17:571998..576575+ (Tribonema minus UTEX_B_3156 )
ATGGGACTGGGCTGCAGCACGGACGCGGTGGACGGCGCCGCCGCCGCGGG
CCACCTGGATGTGGTGCGGTGGCTCTCCGAGTTCCGCGCGGAGGGCGGAA
CGCGCGCCGCAATGGACTACGCCGCTGCCGCGGGGCACCTGCACGTCGTG
CGCTACTTGCACGAGGGCTGCCAGTGGAAGCCGGAGTGCACCAAGAACGC
CATGAACTGGGCGGCAGCGGGGGGGCACCTGGATGTGGCTGCAACTCTGA
CTCCGCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCGCTGCCGCCAGGTCCGCTTCCTCCACGAGCGCCGCAGCGAGGG
CTGCACGCGCGCGGCGATGGACCGCGCGTGCCTGCACGGCCACCTCCACG
TCGCCGCCTTTCTGCACGCGCACCGCGCCGAGGGGTGCACGCACGCGGCG
ATGCTCGGCGCCGCGGCGCGCGGCCACACCGCCGTGTGCCAGTGGCTGTA
CGCGCACACGGCGCTGCGCTGCTCGCCCTTCGGCATGGACAAGGCGGCAC
AGGGCGGCCATCTAGACCTGCTCAAGTGGCTGCACGCGCGCGGCGAGGCG
TGCACGACCAACGCCATGGACTACGCGGCGGCGTTCGGCGAGCTCGCGAC
GGTGCTGTGGCTGCACCTGCACAGGACGGAGGGCTGCACGGCGAGCGCGC
TAGAGTGGGCGGCAATCAACGGGCACCTCGCCACGGTGCGGTGGCTGCAT
GCAAACCGCACCGAGGGGTGCACACGGCGCGCCATGAACGGCGCCGCCGG
CAACGGGCACCTGGAGGTCGTCAAGTTCCTGCACTTCAACAGGCGCGAGG
GCGCGTCGCGCACCGCCATGGACGAGGCCGCGCGCAACGGCCACCTCGAG
GTCGTGCGGTGGCTGCGCGAGAACAGGGCGGAGGGCTGCAGCGAGCGCGC
CATGCAGGGCGCCGCGCAGAACGGCCACGTGGACGTGCTCGCGTACCTCC
AGGTACATGTGCGATTCAAACCATCGTAA