mRNA_3376 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161515
Unique NamemRNA_3376
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161515 vs. uniprot
Match: A0A835Z5F1_9STRA (WW domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5F1_9STRA)

HSP 1 Score: 240 bits (612), Expect = 3.520e-80
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 
Query:    1 MSAAXXXXXXXXXXDGSSNRPAPGGAGSVQGDSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK 369
            MSAAXXXXXXXXXXDGSSNRPAPGGAGSVQGDSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK
Sbjct:    1 MSAAXXXXXXXXXXDGSSNRPAPGGAGSVQGDSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK 123
[Close]
BLAST of jgi.p|Trimin1|161515 vs. uniprot
Match: A0A7S1XUY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUY8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 3.060e-50
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:  100 IILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK 369
            I+LEEEIDPNY PTEEEV+EYA+WL MDL+KDR +FWIA+EGLKAPLP+ WKPCKT DTEEIYYFNF  G STWDHPCD+YYR LYEE K
Sbjct:   72 IVLEEEIDPNYTPTEEEVLEYARWLRMDLEKDRDLFWIAREGLKAPLPKEWKPCKTRDTEEIYYFNFSNGQSTWDHPCDEYYRSLYEEHK 161
[Close]
BLAST of jgi.p|Trimin1|161515 vs. uniprot
Match: A0A6A5AJW4_9STRA (WW domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AJW4_9STRA)

HSP 1 Score: 174 bits (441), Expect = 6.470e-49
Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:   88 QGDSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK 369
            QGDSI+LEEEIDPNY PTE+EV+EYAKWLGMDLD +R +FWIA+EGLKAPLPE+WKPCKT DT EIYYFNF +G STWDHPCD+YYRKLY++ K
Sbjct:    5 QGDSIVLEEEIDPNYEPTEDEVIEYAKWLGMDLDAERELFWIAREGLKAPLPENWKPCKTTDTGEIYYFNFASGASTWDHPCDEYYRKLYDDHK 98
[Close]
BLAST of jgi.p|Trimin1|161515 vs. uniprot
Match: A0A2D4BW60_PYTIN (WW domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW60_PYTIN)

HSP 1 Score: 171 bits (433), Expect = 1.400e-48
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:   85 VQGDSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK 369
             QGDSI+LEEEIDPNY P+E EV+EYA WLGMDL+ ++ +FWIA+EGLKAPLPE+WKPCKT DTEEIYYFNF TG STWDHPCD++YR LY+E K
Sbjct:    4 AQGDSIVLEEEIDPNYEPSEREVLEYASWLGMDLENEQDLFWIAREGLKAPLPENWKPCKTTDTEEIYYFNFATGQSTWDHPCDEFYRNLYDEHK 98
[Close]
BLAST of jgi.p|Trimin1|161515 vs. uniprot
Match: A0A6G0XSA2_9STRA (WW domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSA2_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.580e-48
Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:   88 QGDSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK 369
            QGDSI+LEEEIDPNY PTE+EV+EYAKWLGMDL+ +R +FWIA+EGLKAPLPE+WKPCKT DT EIYYFNF TG STWDHPCD+YYRKLY++ K
Sbjct:    5 QGDSIVLEEEIDPNYEPTEDEVLEYAKWLGMDLEAERDLFWIAREGLKAPLPENWKPCKTTDTGEIYYFNFATGASTWDHPCDEYYRKLYDDHK 98
[Close]
BLAST of jgi.p|Trimin1|161515 vs. uniprot
Match: A0A485KW62_9STRA (Aste57867_12659 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW62_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.580e-48
Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:   88 QGDSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK 369
            QGDSI+LEEEIDPNY PTE+EV+EYAKWLGMDLD +R +FWIA+EGLKAPLPE+WKPCKT DT EIYYFNF +G STWDHPCD+YYRKLY++ K
Sbjct:    5 QGDSIVLEEEIDPNYEPTEDEVLEYAKWLGMDLDAERDLFWIAREGLKAPLPENWKPCKTTDTGEIYYFNFASGASTWDHPCDEYYRKLYDDHK 98
[Close]
BLAST of jgi.p|Trimin1|161515 vs. uniprot
Match: A0A024U7J7_9STRA (WW domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7J7_9STRA)

HSP 1 Score: 174 bits (442), Expect = 3.520e-48
Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:   88 QGDSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK 369
            QGDSI+LEEEIDPNY PTE+EV+EYAKWLGMDLD +R +FWIA+EGLKAPLPE+WKPCKT DT EIYYFNF +G STWDHPCD+YYRKLY++ K
Sbjct:    5 QGDSIVLEEEIDPNYEPTEDEVIEYAKWLGMDLDAERDLFWIAREGLKAPLPENWKPCKTTDTGEIYYFNFASGASTWDHPCDEYYRKLYDDHK 98
[Close]
BLAST of jgi.p|Trimin1|161515 vs. uniprot
Match: A0A397BUP7_9STRA (WW domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BUP7_9STRA)

HSP 1 Score: 174 bits (441), Expect = 4.780e-48
Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:   88 QGDSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK 369
            QGDSI+LEEEIDPNY PTE+EV+EYAKWLGMDLD +R +FWIA+EGLKAPLPE+WKPCKT DT EIYYFNF +G STWDHPCD+YYRKLY++ K
Sbjct:  355 QGDSIVLEEEIDPNYEPTEDEVIEYAKWLGMDLDAERELFWIAREGLKAPLPENWKPCKTTDTGEIYYFNFASGASTWDHPCDEYYRKLYDDHK 448
[Close]
BLAST of jgi.p|Trimin1|161515 vs. uniprot
Match: W4FW72_9STRA (WW domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FW72_9STRA)

HSP 1 Score: 174 bits (441), Expect = 4.800e-48
Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:   88 QGDSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK 369
            QGDSI+LEEEIDPNY PTE+EV+EYAKWLGMDLD +R +FWIA+EGLKAPLPE+WKPCKT DT EIYYFNF +G STWDHPCD+YYRKLY++ K
Sbjct:    5 QGDSIVLEEEIDPNYEPTEDEVIEYAKWLGMDLDAERELFWIAREGLKAPLPENWKPCKTTDTGEIYYFNFASGASTWDHPCDEYYRKLYDDHK 98
[Close]
BLAST of jgi.p|Trimin1|161515 vs. uniprot
Match: A0A3L6UUM6_9STRA (Adenosine kinase (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UUM6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 4.820e-48
Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:   88 QGDSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGDSTWDHPCDDYYRKLYEEEK 369
            QGDSI+LEEEIDPNY PTE+EV+EYAKWLGMDLD +R +FWIA+EGLKAPLPE+WKPCKT DT EIYYFNF +G STWDHPCD+YYRKLY++ K
Sbjct:  685 QGDSIVLEEEIDPNYEPTEDEVIEYAKWLGMDLDAERELFWIAREGLKAPLPENWKPCKTTDTGEIYYFNFASGASTWDHPCDEYYRKLYDDHK 778
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161515 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5F1_9STRA3.520e-80100.00WW domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A7S1XUY8_9STRA3.060e-5080.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6A5AJW4_9STRA6.470e-4979.79WW domain-containing protein (Fragment) n=1 Tax=Ap... [more]
A0A2D4BW60_PYTIN1.400e-4875.79WW domain-containing protein n=1 Tax=Pythium insid... [more]
A0A6G0XSA2_9STRA2.580e-4879.79WW domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A485KW62_9STRA2.580e-4879.79Aste57867_12659 protein n=1 Tax=Aphanomyces stella... [more]
A0A024U7J7_9STRA3.520e-4879.79WW domain-containing protein n=3 Tax=Aphanomyces i... [more]
A0A397BUP7_9STRA4.780e-4879.79WW domain-containing protein (Fragment) n=1 Tax=Ap... [more]
W4FW72_9STRA4.800e-4879.79WW domain-containing protein n=8 Tax=Aphanomyces a... [more]
A0A3L6UUM6_9STRA4.820e-4879.79Adenosine kinase (Fragment) n=2 Tax=Aphanomyces as... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:504172..504540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161515|e_gw1.17.76.1
BRITEko00000,ko03036
KEGG koko:K16462
GOsGO:0000086,GO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006996,GO:0007049,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0032991,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0050789,GO:0050794,GO:0051179,GO:0051640,GO:0051641,GO:0051726,GO:0060271,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0097539,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901987,GO:1901990,GO:1902749,GO:1903047
Preferred nameCEP164
Descriptioncilium assembly
COG categoryA
Max annot lvl2759|Eukaryota
EggNOG OGs28IT0@1|root,2QR4A@2759|Eukaryota
Evalue5.77e-49
Seed ortholog157072.XP_008869426.1
Hectar predicted targeting categoryother localisation
TranscriptId161837
TrackFilteredModels1
ProteinId161515
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161515gene_3376Tribonema minus UTEX_B_3156 geneContig_17 504172..504540 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3376_1exon_3376_1Tribonema minus UTEX_B_3156 exonContig_17 504172..504540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3376CDS_3376Tribonema minus UTEX_B_3156 CDSContig_17 504172..504540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161515Trimin1|161515|e_gw1.17.76.1Tribonema minus UTEX_B_3156 polypeptideContig_17 504172..504540 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3376 ID=mRNA_3376|Name=jgi.p|Trimin1|161515|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=369bp|location=Sequence derived from alignment at Contig_17:504172..504540+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCCGCCGCGGCAGCAGCAGGAGGGGGGCCGGGAGGCGATGGCAG
CAGCAACAGGCCTGCTCCAGGCGGGGCTGGATCAGTGCAGGGCGACAGCA
TCATTTTAGAGGAAGAGATAGACCCAAACTACGTGCCCACGGAGGAGGAA
GTGATGGAGTACGCCAAGTGGCTGGGCATGGATCTCGACAAGGACAGGGG
CATGTTCTGGATCGCCAAGGAGGGGCTCAAGGCCCCCCTGCCGGAGCACT
GGAAGCCTTGCAAGACCGTGGACACGGAGGAGATCTACTACTTCAACTTC
CTCACCGGGGACTCCACGTGGGACCACCCATGCGACGACTACTACAGGAA
GCTGTACGAGGAGGAGAAG
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protein sequence of jgi.p|Trimin1|161515

>Trimin1|161515|e_gw1.17.76.1 ID=Trimin1|161515|e_gw1.17.76.1|Name=jgi.p|Trimin1|161515|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=123bp
MSAAAAAAGGGPGGDGSSNRPAPGGAGSVQGDSIILEEEIDPNYVPTEEE
VMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNF
LTGDSTWDHPCDDYYRKLYEEEK
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mRNA from alignment at Contig_17:504172..504540+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3376 ID=mRNA_3376|Name=jgi.p|Trimin1|161515|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=369bp|location=Sequence derived from alignment at Contig_17:504172..504540+ (Tribonema minus UTEX_B_3156 )
ATGAGTGCCGCCGCGGCAGCAGCAGGAGGGGGGCCGGGAGGCGATGGCAG
CAGCAACAGGCCTGCTCCAGGCGGGGCTGGATCAGTGCAGGGCGACAGCA
TCATTTTAGAGGAAGAGATAGACCCAAACTACGTGCCCACGGAGGAGGAA
GTGATGGAGTACGCCAAGTGGCTGGGCATGGATCTCGACAAGGACAGGGG
CATGTTCTGGATCGCCAAGGAGGGGCTCAAGGCCCCCCTGCCGGAGCACT
GGAAGCCTTGCAAGACCGTGGACACGGAGGAGATCTACTACTTCAACTTC
CTCACCGGGGACTCCACGTGGGACCACCCATGCGACGACTACTACAGGAA
GCTGTACGAGGAGGAGAAG
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Coding sequence (CDS) from alignment at Contig_17:504172..504540+

>mRNA_3376 ID=mRNA_3376|Name=jgi.p|Trimin1|161515|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=369bp|location=Sequence derived from alignment at Contig_17:504172..504540+ (Tribonema minus UTEX_B_3156 )
ATGAGTGCCGCCGCGGCAGCAGCAGGAGGGGGGCCGGGAGGCGATGGCAG
CAGCAACAGGCCTGCTCCAGGCGGGGCTGGATCAGTGCAGGGCGACAGCA
TCATTTTAGAGGAAGAGATAGACCCAAACTACGTGCCCACGGAGGAGGAA
GTGATGGAGTACGCCAAGTGGCTGGGCATGGATCTCGACAAGGACAGGGG
CATGTTCTGGATCGCCAAGGAGGGGCTCAAGGCCCCCCTGCCGGAGCACT
GGAAGCCTTGCAAGACCGTGGACACGGAGGAGATCTACTACTTCAACTTC
CTCACCGGGGACTCCACGTGGGACCACCCATGCGACGACTACTACAGGAA
GCTGTACGAGGAGGAGAAG
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