mRNA_3364 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161406
Unique NamemRNA_3364
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161406 vs. uniprot
Match: A0A835ZAP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP3_9STRA)

HSP 1 Score: 234 bits (598), Expect = 1.420e-78
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:    1 MCVHVLNAQVAIQCQTCKGFFDCAECHDSAPVVNHGFCPGNGVVTFTCKQCQIVFQKDLATFDDLDKACPNCHTCFVMQAMTPEGQLHAHCMKLLDADLEEILQGF 318
            MCVHVLNAQVAIQCQTCKGFFDCAECHDSAPVVNHGFCPGNGVVTFTCKQCQIVFQKDLATFDDLDKACPNCHTCFVMQAMTPEGQLHAHCMKLLDADLEEILQGF
Sbjct:    1 MCVHVLNAQVAIQCQTCKGFFDCAECHDSAPVVNHGFCPGNGVVTFTCKQCQIVFQKDLATFDDLDKACPNCHTCFVMQAMTPEGQLHAHCMKLLDADLEEILQGF 106
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161406 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZAP3_9STRA1.420e-78100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:398614..398934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161406|e_gw1.17.236.1
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:1990542
DescriptionCHY zinc finger
COG categoryS
Max annot lvl4751|Fungi
EggNOG OGsKOG1940@1|root,KOG1940@2759|Eukaryota,3A3N6@33154|Opisthokonta,3P3UA@4751|Fungi,3QV9K@4890|Ascomycota,20HBM@147545|Eurotiomycetes,3S9AB@5042|Eurotiales
Evalue2.26e-20
Seed ortholog1108849.XP_002568497.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_003420.1
TranscriptId161728
TrackFilteredModels1
ProteinId161406
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161406gene_3364Tribonema minus UTEX_B_3156 geneContig_17 398614..398934 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3364_1exon_3364_1Tribonema minus UTEX_B_3156 exonContig_17 398614..398934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3364CDS_3364Tribonema minus UTEX_B_3156 CDSContig_17 398614..398934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161406Trimin1|161406|e_gw1.17.236.1Tribonema minus UTEX_B_3156 polypeptideContig_17 398614..398934 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3364 ID=mRNA_3364|Name=jgi.p|Trimin1|161406|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_17:398614..398934+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGTTCACGTCCTGAACGCGCAGGTAGCGATACAGTGCCAGACCTG
CAAGGGCTTTTTCGACTGCGCTGAGTGCCATGACTCTGCGCCTGTGGTAA
ATCACGGCTTCTGCCCTGGCAACGGTGTAGTAACATTTACCTGCAAGCAA
TGCCAGATCGTCTTCCAGAAGGACCTGGCGACCTTCGACGATTTGGACAA
GGCTTGCCCTAACTGTCACACGTGCTTCGTCATGCAAGCCATGACGCCAG
AAGGTCAGCTGCACGCGCACTGCATGAAGCTGCTAGACGCTGATCTGGAG
GAGATTCTGCAAGGATTCTGA
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protein sequence of jgi.p|Trimin1|161406

>Trimin1|161406|e_gw1.17.236.1 ID=Trimin1|161406|e_gw1.17.236.1|Name=jgi.p|Trimin1|161406|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
MCVHVLNAQVAIQCQTCKGFFDCAECHDSAPVVNHGFCPGNGVVTFTCKQ
CQIVFQKDLATFDDLDKACPNCHTCFVMQAMTPEGQLHAHCMKLLDADLE
EILQGF*
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mRNA from alignment at Contig_17:398614..398934+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3364 ID=mRNA_3364|Name=jgi.p|Trimin1|161406|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_17:398614..398934+ (Tribonema minus UTEX_B_3156 )
ATGTGTGTTCACGTCCTGAACGCGCAGGTAGCGATACAGTGCCAGACCTG
CAAGGGCTTTTTCGACTGCGCTGAGTGCCATGACTCTGCGCCTGTGGTAA
ATCACGGCTTCTGCCCTGGCAACGGTGTAGTAACATTTACCTGCAAGCAA
TGCCAGATCGTCTTCCAGAAGGACCTGGCGACCTTCGACGATTTGGACAA
GGCTTGCCCTAACTGTCACACGTGCTTCGTCATGCAAGCCATGACGCCAG
AAGGTCAGCTGCACGCGCACTGCATGAAGCTGCTAGACGCTGATCTGGAG
GAGATTCTGCAAGGATTCTGA
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Coding sequence (CDS) from alignment at Contig_17:398614..398934+

>mRNA_3364 ID=mRNA_3364|Name=jgi.p|Trimin1|161406|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_17:398614..398934+ (Tribonema minus UTEX_B_3156 )
ATGTGTGTTCACGTCCTGAACGCGCAGGTAGCGATACAGTGCCAGACCTG
CAAGGGCTTTTTCGACTGCGCTGAGTGCCATGACTCTGCGCCTGTGGTAA
ATCACGGCTTCTGCCCTGGCAACGGTGTAGTAACATTTACCTGCAAGCAA
TGCCAGATCGTCTTCCAGAAGGACCTGGCGACCTTCGACGATTTGGACAA
GGCTTGCCCTAACTGTCACACGTGCTTCGTCATGCAAGCCATGACGCCAG
AAGGTCAGCTGCACGCGCACTGCATGAAGCTGCTAGACGCTGATCTGGAG
GAGATTCTGCAAGGATTCTGA
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