mRNA_3353 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347902
Unique NamemRNA_3353
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347902 vs. uniprot
Match: A0A836CJN7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.840e-45
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:   46 MRTVAVCLLCLAASANAFLFAPAGVRSTALAQSTKSTTQVEKVVKDRQFNELLTKLNDSSIRGLTSDDKTPTYAVSADDESKSE 297
            MRTVAVCLLCLAASANAFLFAPAGVRSTALAQSTKSTTQVEKVVKDRQFNELLTKLNDSSIRGLTSDDKTPTYAVSADDESKSE
Sbjct:    1 MRTVAVCLLCLAASANAFLFAPAGVRSTALAQSTKSTTQVEKVVKDRQFNELLTKLNDSSIRGLTSDDKTPTYAVSADDESKSE 84
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BLAST of jgi.p|Trimin1|347902 vs. uniprot
Match: A0A836CIL1_9STRA (3-beta hydroxysteroid dehydrogenase/isomerase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL1_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.220e-38
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = -1 
Query:  334 RRPLRKDMQGGAAEARGAEQRCGTCAPPDPSISSYINEYWGRRCPNAGLQTVQQRSNRLVFAGGEWGTV 540
            + PLRKDMQGGAAEARGAEQRCGTCAPPDPSISSYINEYWGRRCPNAGLQTVQQRSNRLVFAGGEWGTV
Sbjct:  436 QEPLRKDMQGGAAEARGAEQRCGTCAPPDPSISSYINEYWGRRCPNAGLQTVQQRSNRLVFAGGEWGTV 504
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347902 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CJN7_9STRA1.840e-45100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIL1_9STRA1.220e-3897.103-beta hydroxysteroid dehydrogenase/isomerase fami... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:347679..349605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347902|estExt_Genemark1.C_Ctg_170046
Hectar predicted targeting categorychloroplast
TranscriptId348224
TrackFilteredModels1
ProteinId347902
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347902gene_3353Tribonema minus UTEX_B_3156 geneContig_17 347679..349605 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3353_1exon_3353_1Tribonema minus UTEX_B_3156 exonContig_17 347679..347793 +
exon_3353_2exon_3353_2Tribonema minus UTEX_B_3156 exonContig_17 349118..349605 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3353UTR5_3353Tribonema minus UTEX_B_3156 five_prime_UTRContig_17 347679..347723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3353CDS_3353Tribonema minus UTEX_B_3156 CDSContig_17 347724..347793 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3353UTR3_3353Tribonema minus UTEX_B_3156 three_prime_UTRContig_17 349303..349605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347902Trimin1|347902|estExt_Genemark1.C_Ctg_170046Tribonema minus UTEX_B_3156 polypeptideContig_17 347724..349302 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3353 ID=mRNA_3353|Name=jgi.p|Trimin1|347902|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=603bp|location=Sequence derived from alignment at Contig_17:347679..349605+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCGAACGTCACTACACATCTAGAGATAGCAACCCAGGCGCAAGGATGAG
GACGGTCGCTGTTTGCCTGCTGTGCCTTGCTGCTTCGGCGAACGCGTTCC
TGTTTGCGCCAGCAGGCGTCCGCTCAACGGCGCTCGCGCAGAGCACCAAG
AGCACCACGCAGGTGGAGAAGGTGGTGAAGGACAGGCAGTTCAATGAGCT
CCTCACCAAGCTCAACGACAGCAGCATCAGGGGCCTCACGTCCGACGACA
AGACGCCGACGTACGCCGTCAGCGCGGACGACGAGTCCAAGTCCGAGTAG
AGTCTTTAAAGCTCACCGCAAGGCCGCCCGCTACACAGTCCCCCACTCAC
CCCCTGCAAACACAAGCCGATTCGAGCGCTGCTGCACGGTCTGCAGTCCT
GCGTTTGGGCAACGGCGCCCCCAGTATTCGTTGATGTAACTGGAAATTGA
CGGGTCAGGCGGCGCGCATGTGCCGCAGCGCTGCTCCGCGCCGCGCGCCT
CGGCCGCGCCGCCCTGCATGTCTTTGCGTAGAGGCCTGCGGGGGCCAGCC
CACGTTGCGCAAGATTTGACCAGAACTAATGATGTTACGCTTGTGTTGAC
GTA
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protein sequence of jgi.p|Trimin1|347902

>Trimin1|347902|estExt_Genemark1.C_Ctg_170046 ID=Trimin1|347902|estExt_Genemark1.C_Ctg_170046|Name=jgi.p|Trimin1|347902|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=85bp
MRTVAVCLLCLAASANAFLFAPAGVRSTALAQSTKSTTQVEKVVKDRQFN
ELLTKLNDSSIRGLTSDDKTPTYAVSADDESKSE*
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mRNA from alignment at Contig_17:347679..349605+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3353 ID=mRNA_3353|Name=jgi.p|Trimin1|347902|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1927bp|location=Sequence derived from alignment at Contig_17:347679..349605+ (Tribonema minus UTEX_B_3156 )
GTCGAACGTCACTACACATCTAGAGATAGCAACCCAGGCGCAAGGATGAG
GACGGTCGCTGTTTGCCTGCTGTGCCTTGCTGCTTCGGCGAACGCGTTCC
TGTTTGCGCCAGCAGGTGAGCCGCTACACTCGCACTTGCAAGCTTTTTAG
AAGGTTTTTGAACATCGAAGACACACAGCGTGCATGTATTACGCGCGCGC
CATATGCTGCTCTCAGTGAAGATCTGGCCTGGCTTCGTCCTGGCAGCACT
GATGCACAGCCGTGCAGCACAAATCGAGGTGTCGCTGTCGGCAGGCGGGC
AACAACGATAGGATCGTTTCGCTCAGTTGTGGCTGCTGCTGCTGGAGGAG
CCATCACTCCCATGGACGCGTGCGGCAATGCTCCTTCCTGTGTCAGTACA
TGACGCTGCACAGCTGCAGTCGGCTCTTGTGCGATGGAATGTCACTGGCA
GGCTCACAACTGAGCCCTGGGCCGTTGATGGACGCGCGGCACCAGCCGAT
GATTCGTTGCAGCATTTGAGCGTGCAAGAAGATGTGACAGAACTTCGCAG
TATCTGATAGCTCCATTATGAAATCAGCTCCGGTGCAGTCGGCGCCGGGC
CGATCACGGTGGCGCTGTTATAATGGCAGCCTGCCGACCTTCGCCTTCGA
TAGGGCTGTCGGGGTGTAATGGCAAGGATTCACAGAGTTGTCGGTTACTG
CATCATGTTGCAGCTTCTGCTGAGGACGTACCCCATAATATGCTGCAACG
CGATGCTGCTCATGAAAGTTGTGTGTGCCCATGGATGAGATTGCTTGAAT
CTCACGTCTCTGAAGACCACTTCAAGAGCAGCGCGAGATCTCAAGTAGCA
GCACTGTAATGATGTCAAGACTGATACTGCATGTACTGGCGCGCACGTGT
ACCAGCAGAAGTACCCGGGCTTGCAGCTGCAAGCTGGACTTGGCACTCCT
GTCTGTGTGACTGCAATGCGTGAATCATCACATTCACATACTTCCTGTGC
TGCATCAGGTGTGCATTGCATGGCAGGCACATGGCCGGTGCTACTCGCAT
GAATCATCACATTCACATACTTTCTGTGTTACATCAGGTGTGTATTGCAT
GGCTGGAACATATCCGGTGGCGGTCGCACCCACCTATTGACGCAGTAGCA
AGCCAGCATCTGGTTTCCACAAGTCGACAGCAGACAAGTGGTGCAACAGC
CATGCTCATTGCCACCAAAGCGCATGTCACTGCAACCTCCCATTTGCAAG
GCAGACAATAATTCACGAACACAAATCAAAAGATCGTAGAGCTGTAGCTG
ATAAGGTGTGGCTAGCCGTCAAATTGAATGCCTTCCACCACTAATCGTGG
TCGCCGCTGCTGCGGCAATTGGCCATCGACAGTGTCACCACATCCATAGT
AGTAATTCACGCTGTGCACTGCTGCCACGGCTGCCGCAGGCGTCCGCTCA
ACGGCGCTCGCGCAGAGCACCAAGAGCACCACGCAGGTGGAGAAGGTGGT
GAAGGACAGGCAGTTCAATGAGCTCCTCACCAAGCTCAACGACAGCAGCA
TCAGGGGCCTCACGTCCGACGACAAGACGCCGACGTACGCCGTCAGCGCG
GACGACGAGTCCAAGTCCGAGTAGAGTCTTTAAAGCTCACCGCAAGGCCG
CCCGCTACACAGTCCCCCACTCACCCCCTGCAAACACAAGCCGATTCGAG
CGCTGCTGCACGGTCTGCAGTCCTGCGTTTGGGCAACGGCGCCCCCAGTA
TTCGTTGATGTAACTGGAAATTGACGGGTCAGGCGGCGCGCATGTGCCGC
AGCGCTGCTCCGCGCCGCGCGCCTCGGCCGCGCCGCCCTGCATGTCTTTG
CGTAGAGGCCTGCGGGGGCCAGCCCACGTTGCGCAAGATTTGACCAGAAC
TAATGATGTTACGCTTGTGTTGACGTA
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Coding sequence (CDS) from alignment at Contig_17:347679..349605+

>mRNA_3353 ID=mRNA_3353|Name=jgi.p|Trimin1|347902|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=255bp|location=Sequence derived from alignment at Contig_17:347679..349605+ (Tribonema minus UTEX_B_3156 )
ATGAGGACGGTCGCTGTTTGCCTGCTGTGCCTTGCTGCTTCGGCGAACGC
GTTCCTGTTTGCGCCAGCAGGCGTCCGCTCAACGGCGCTCGCGCAGAGCA
CCAAGAGCACCACGCAGGTGGAGAAGGTGGTGAAGGACAGGCAGTTCAAT
GAGCTCCTCACCAAGCTCAACGACAGCAGCATCAGGGGCCTCACGTCCGA
CGACAAGACGCCGACGTACGCCGTCAGCGCGGACGACGAGTCCAAGTCCG
AGTAG
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