mRNA_3345 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161576
Unique NamemRNA_3345
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161576 vs. uniprot
Match: A0A835Z734_9STRA (WW domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z734_9STRA)

HSP 1 Score: 241 bits (616), Expect = 5.950e-81
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 
Query:    1 MSTHSNASASSKELLHLAFTSSRGRQDTGSHHSSRHKPIVVTKDVIKAAELLGMVLPDDERYLQIAVDCVSAVDFPDWEMLTDEGTGELYYWNQSAKVSAWENPKHEYYKNLFLQRKA 354
            MSTHSNASASSKELLHLAFTSSRGRQDTGSHHSSRHKPIVVTKDVIKAAELLGMVLPDDERYLQIAVDCVSAVDFPDWEMLTDEGTGELYYWNQSAKVSAWENPKHEYYKNLFLQRKA
Sbjct:    1 MSTHSNASASSKELLHLAFTSSRGRQDTGSHHSSRHKPIVVTKDVIKAAELLGMVLPDDERYLQIAVDCVSAVDFPDWEMLTDEGTGELYYWNQSAKVSAWENPKHEYYKNLFLQRKA 118
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161576 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z734_9STRA5.950e-81100.00WW domain-containing protein (Fragment) n=1 Tax=Tr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:300102..300455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161576|e_gw1.17.239.1
DescriptionDomain with 2 conserved Trp (W) residues
COG categoryA
Max annot lvl2759|Eukaryota
EggNOG OGs2EAMA@1|root,2SGUQ@2759|Eukaryota
Evalue5e-13
Seed ortholog2880.D7FVQ3
Hectar predicted targeting categoryother localisation
TranscriptId161898
TrackFilteredModels1
ProteinId161576
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161576gene_3345Tribonema minus UTEX_B_3156 geneContig_17 300102..300455 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3345_1exon_3345_1Tribonema minus UTEX_B_3156 exonContig_17 300102..300455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3345CDS_3345Tribonema minus UTEX_B_3156 CDSContig_17 300102..300455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161576Trimin1|161576|e_gw1.17.239.1Tribonema minus UTEX_B_3156 polypeptideContig_17 300102..300455 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3345 ID=mRNA_3345|Name=jgi.p|Trimin1|161576|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_17:300102..300455- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACACATAGTAACGCCAGCGCCAGCAGCAAAGAGCTGCTGCACCT
GGCCTTTACTTCTAGCCGCGGTCGGCAGGACACCGGCAGCCATCATTCCT
CGAGGCACAAGCCTATTGTTGTCACCAAAGATGTGATCAAAGCGGCAGAG
CTACTCGGCATGGTTCTGCCAGACGACGAGCGATATCTGCAGATCGCGGT
CGACTGCGTAAGTGCAGTAGATTTTCCTGATTGGGAGATGCTCACCGACG
AGGGCACCGGTGAACTCTACTATTGGAACCAAAGCGCCAAAGTGAGCGCC
TGGGAGAATCCCAAACACGAGTACTATAAAAACCTGTTCCTGCAACGCAA
GGCG
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protein sequence of jgi.p|Trimin1|161576

>Trimin1|161576|e_gw1.17.239.1 ID=Trimin1|161576|e_gw1.17.239.1|Name=jgi.p|Trimin1|161576|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp
MSTHSNASASSKELLHLAFTSSRGRQDTGSHHSSRHKPIVVTKDVIKAAE
LLGMVLPDDERYLQIAVDCVSAVDFPDWEMLTDEGTGELYYWNQSAKVSA
WENPKHEYYKNLFLQRKA
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mRNA from alignment at Contig_17:300102..300455-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3345 ID=mRNA_3345|Name=jgi.p|Trimin1|161576|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_17:300102..300455- (Tribonema minus UTEX_B_3156 )
ATGAGCACACATAGTAACGCCAGCGCCAGCAGCAAAGAGCTGCTGCACCT
GGCCTTTACTTCTAGCCGCGGTCGGCAGGACACCGGCAGCCATCATTCCT
CGAGGCACAAGCCTATTGTTGTCACCAAAGATGTGATCAAAGCGGCAGAG
CTACTCGGCATGGTTCTGCCAGACGACGAGCGATATCTGCAGATCGCGGT
CGACTGCGTAAGTGCAGTAGATTTTCCTGATTGGGAGATGCTCACCGACG
AGGGCACCGGTGAACTCTACTATTGGAACCAAAGCGCCAAAGTGAGCGCC
TGGGAGAATCCCAAACACGAGTACTATAAAAACCTGTTCCTGCAACGCAA
GGCG
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Coding sequence (CDS) from alignment at Contig_17:300102..300455-

>mRNA_3345 ID=mRNA_3345|Name=jgi.p|Trimin1|161576|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_17:300102..300455- (Tribonema minus UTEX_B_3156 )
ATGAGCACACATAGTAACGCCAGCGCCAGCAGCAAAGAGCTGCTGCACCT
GGCCTTTACTTCTAGCCGCGGTCGGCAGGACACCGGCAGCCATCATTCCT
CGAGGCACAAGCCTATTGTTGTCACCAAAGATGTGATCAAAGCGGCAGAG
CTACTCGGCATGGTTCTGCCAGACGACGAGCGATATCTGCAGATCGCGGT
CGACTGCGTAAGTGCAGTAGATTTTCCTGATTGGGAGATGCTCACCGACG
AGGGCACCGGTGAACTCTACTATTGGAACCAAAGCGCCAAAGTGAGCGCC
TGGGAGAATCCCAAACACGAGTACTATAAAAACCTGTTCCTGCAACGCAA
GGCG
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