mRNA_3314 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: A0A835Z711_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z711_9STRA) HSP 1 Score: 293 bits (751), Expect = 1.670e-100 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1 Query: 1 MAPNFNTPHLRSSPQEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKDASGFANA 450 MAPNFNTPHLRSSPQEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKDASGFANA Sbjct: 1 MAPNFNTPHLRSSPQEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKDASGFANA 150
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: A0A6H5JCM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM3_9PHAE) HSP 1 Score: 152 bits (385), Expect = 4.590e-40 Identity = 83/136 (61.03%), Postives = 105/136 (77.21%), Query Frame = 1 Query: 43 QEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQC-LIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKDASGFAN 447 +EV+D +ER + + GV VRIDG+T + KRQ +VDRFQ V +ILLSITAAGVGITLTA S A FAELYWTPG MAQAEDRIHRIGQK++ LI++LV TMD ++S+I KQ TL+ST G+++DA G++N Sbjct: 396 KEVMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQGSSSVSVILLSITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRIGQKAKTVLIRYLVG-RGTMDDGMISTIHRKQTTLRSTVGLNRDAGGYSN 530
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI) HSP 1 Score: 152 bits (384), Expect = 6.440e-40 Identity = 83/136 (61.03%), Postives = 105/136 (77.21%), Query Frame = 1 Query: 43 QEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQC-LIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKDASGFAN 447 +EV+D +ER + + GV VRIDG+T + KRQ +VDRFQ V +ILLSITAAGVGITLTA S A FAELYWTPG MAQAEDRIHRIGQK++ LI++LV TMD ++S+I KQ TL+ST G+++DA G++N Sbjct: 798 KEVMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQGSASVSVILLSITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRIGQKAKTVLIRYLVG-RGTMDDGVISTIHRKQTTLRSTVGLNRDAGGYSN 932
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: D3B7Z4_POLPP (SNF2-related domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B7Z4_POLPP) HSP 1 Score: 120 bits (301), Expect = 3.650e-29 Identity = 61/118 (51.69%), Postives = 83/118 (70.34%), Query Frame = 1 Query: 49 VLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTL 402 V+DGIE+ +K VE ++IDG TP R LV+ FQT+ ++++ +LSITAAG G+TLTA S+A FAELYWTPGV+ QAE R+HR GQ LIQ+LV T+D+ + S + K+ L Sbjct: 133 VMDGIEQLVKKKKVEYIKIDGTTPAHARSNLVNIFQTDEKIKVAILSITAAGTGLTLTAASVAIFAELYWTPGVLMQAEARVHRFGQNRSVLIQYLVGIN-TIDESIWSMLESKKDVL 249
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: A0A1S3JIJ9_LINUN (DNA annealing helicase and endonuclease ZRANB3-like isoform X1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JIJ9_LINUN) HSP 1 Score: 121 bits (304), Expect = 3.830e-29 Identity = 60/123 (48.78%), Postives = 86/123 (69.92%), Query Frame = 1 Query: 43 QEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQST 411 Q++L+G++ + D ++ +RIDGN P +R MLVD FQ + R+ LLSITAAGVG+TLTA S+ FAELYWTPG + Q EDR HRIGQ+++ + +LV+ TMD+ + S I+ K + +T Sbjct: 358 QDMLNGLQETLHDLDIKFIRIDGNVPPKERGMLVDTFQKDANTRVALLSITAAGVGLTLTAASLVVFAELYWTPGTLEQCEDRAHRIGQQNRVNVHYLVAKG-TMDEWMWSMINRKTTVVTAT 479
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: D3B4N2_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B4N2_POLPP) HSP 1 Score: 121 bits (303), Expect = 5.230e-29 Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 1 Query: 46 EVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQST 411 ++LDG+ER+IK G +RIDG+TP RQ V RFQ + R+ LLSITAAG G+TLTA S+ F ELYWTPGV+ QAEDR+HRIGQ+ I +L+ T+D + +I K + L T Sbjct: 904 DILDGLERSIKSTGTGYMRIDGSTPAEARQTYVTRFQNSDKCRVALLSITAAGTGLTLTASSLVVFVELYWTPGVLRQAEDRVHRIGQREDVHIHYLIGKN-TLDDKMWPTICNKLEVLGET 1024
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: B0ETK9_ENTDS (Uncharacterized protein n=8 Tax=Entamoeba TaxID=5758 RepID=B0ETK9_ENTDS) HSP 1 Score: 120 bits (302), Expect = 6.870e-29 Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 1 Query: 43 QEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLV 339 QE+LDGIE IK+ +E +RIDG+T R VDRFQ E+R+R+ +LS+TAAG GITL + FAELYWTPGV+ QAEDR+HRIGQK+ I +L+ Sbjct: 428 QEMLDGIENYIKESNIEYIRIDGSTNASLRAKYVDRFQKEKRIRIAILSVTAAGTGITLHSADTVVFAELYWTPGVLRQAEDRVHRIGQKNDVRIFYLI 526
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: A0A7S0TEQ7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TEQ7_HEMAN) HSP 1 Score: 113 bits (282), Expect = 7.070e-29 Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 1 Query: 43 QEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLV 339 +EVLDG+E A++ V ++RIDG +RQ LVD FQ + VR+ +L +TAAGVG+TLTA S FAEL WTPGVM QAEDR+HRIGQ+ + +L+ Sbjct: 40 REVLDGLEAAVRKAKVGLIRIDGGVDASQRQGLVDSFQKDEGVRVAVLGLTAAGVGLTLTASSTVVFAELNWTPGVMVQAEDRVHRIGQRECVNVHYLI 138
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: A0A0B2UKP5_9MICR (Snf2/Rad54-like helicase n=1 Tax=Ordospora colligata OC4 TaxID=1354746 RepID=A0A0B2UKP5_9MICR) HSP 1 Score: 119 bits (299), Expect = 9.660e-29 Identity = 62/128 (48.44%), Postives = 86/128 (67.19%), Query Frame = 1 Query: 46 EVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKD 429 E++DG+ + GV M+RIDG+TP R +LV ++Q + VR+ LLSITA G+TLTAG + FAELYW PGV+ QAEDRIHRIGQKS + +LV+ T+D+++ + K L+S GI K+ Sbjct: 392 EMMDGLNVFFESLGVSMIRIDGSTPSNSRHLLVKKYQDDNEVRLALLSITACSTGLTLTAGKLVVFAELYWNPGVLLQAEDRIHRIGQKSNVDVVYLVAKG-TVDEYVWPKLLSKLNVLESL-GIGKN 517
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: Q554U4_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q554U4_DICDI) HSP 1 Score: 119 bits (297), Expect = 3.340e-28 Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1 Query: 46 EVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQST 411 ++++G+E AIK G +RIDG+TP +RQ V +FQ ++ LLSITAAG G+TLTA ++ F ELYWTPGV+ QAEDRIHRIGQ C I +L+ T+D + +I K + L T Sbjct: 1029 DIMNGLEEAIKSTGAGYIRIDGSTPAVQRQAFVTKFQNNASCKVALLSITAAGTGLTLTASNLVVFVELYWTPGVLRQAEDRIHRIGQTKTCYIHYLIGKN-TLDDRIWPTICNKLEVLGET 1149 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3314 ID=mRNA_3314|Name=jgi.p|Trimin1|161404|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=450bp|location=Sequence derived from alignment at Contig_17:44876..46143+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCCCCAAACTTCAACACGCCCCACTTGCGCTCGTCACCTCAGGAGGTback to top protein sequence of jgi.p|Trimin1|161404 >Trimin1|161404|e_gw1.17.108.1 ID=Trimin1|161404|e_gw1.17.108.1|Name=jgi.p|Trimin1|161404|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=150bp MAPNFNTPHLRSSPQEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRback to top mRNA from alignment at Contig_17:44876..46143+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3314 ID=mRNA_3314|Name=jgi.p|Trimin1|161404|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1268bp|location=Sequence derived from alignment at Contig_17:44876..46143+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_17:44876..46143+ >mRNA_3314 ID=mRNA_3314|Name=jgi.p|Trimin1|161404|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=450bp|location=Sequence derived from alignment at Contig_17:44876..46143+ (Tribonema minus UTEX_B_3156 )back to top |