mRNA_3314 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161404
Unique NamemRNA_3314
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: A0A835Z711_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z711_9STRA)

HSP 1 Score: 293 bits (751), Expect = 1.670e-100
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
Query:    1 MAPNFNTPHLRSSPQEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKDASGFANA 450
            MAPNFNTPHLRSSPQEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKDASGFANA
Sbjct:    1 MAPNFNTPHLRSSPQEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKDASGFANA 150          
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: A0A6H5JCM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM3_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 4.590e-40
Identity = 83/136 (61.03%), Postives = 105/136 (77.21%), Query Frame = 1
Query:   43 QEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQC-LIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKDASGFAN 447
            +EV+D +ER + + GV  VRIDG+T + KRQ +VDRFQ    V +ILLSITAAGVGITLTA S A FAELYWTPG MAQAEDRIHRIGQK++  LI++LV    TMD  ++S+I  KQ TL+ST G+++DA G++N
Sbjct:  396 KEVMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQGSSSVSVILLSITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRIGQKAKTVLIRYLVG-RGTMDDGMISTIHRKQTTLRSTVGLNRDAGGYSN 530          
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 6.440e-40
Identity = 83/136 (61.03%), Postives = 105/136 (77.21%), Query Frame = 1
Query:   43 QEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQC-LIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKDASGFAN 447
            +EV+D +ER + + GV  VRIDG+T + KRQ +VDRFQ    V +ILLSITAAGVGITLTA S A FAELYWTPG MAQAEDRIHRIGQK++  LI++LV    TMD  ++S+I  KQ TL+ST G+++DA G++N
Sbjct:  798 KEVMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQGSASVSVILLSITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRIGQKAKTVLIRYLVG-RGTMDDGVISTIHRKQTTLRSTVGLNRDAGGYSN 932          
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: D3B7Z4_POLPP (SNF2-related domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B7Z4_POLPP)

HSP 1 Score: 120 bits (301), Expect = 3.650e-29
Identity = 61/118 (51.69%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   49 VLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTL 402
            V+DGIE+ +K   VE ++IDG TP   R  LV+ FQT+ ++++ +LSITAAG G+TLTA S+A FAELYWTPGV+ QAE R+HR GQ    LIQ+LV    T+D+ + S +  K+  L
Sbjct:  133 VMDGIEQLVKKKKVEYIKIDGTTPAHARSNLVNIFQTDEKIKVAILSITAAGTGLTLTAASVAIFAELYWTPGVLMQAEARVHRFGQNRSVLIQYLVGIN-TIDESIWSMLESKKDVL 249          
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: A0A1S3JIJ9_LINUN (DNA annealing helicase and endonuclease ZRANB3-like isoform X1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JIJ9_LINUN)

HSP 1 Score: 121 bits (304), Expect = 3.830e-29
Identity = 60/123 (48.78%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   43 QEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQST 411
            Q++L+G++  + D  ++ +RIDGN P  +R MLVD FQ +   R+ LLSITAAGVG+TLTA S+  FAELYWTPG + Q EDR HRIGQ+++  + +LV+   TMD+ + S I+ K   + +T
Sbjct:  358 QDMLNGLQETLHDLDIKFIRIDGNVPPKERGMLVDTFQKDANTRVALLSITAAGVGLTLTAASLVVFAELYWTPGTLEQCEDRAHRIGQQNRVNVHYLVAKG-TMDEWMWSMINRKTTVVTAT 479          
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: D3B4N2_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B4N2_POLPP)

HSP 1 Score: 121 bits (303), Expect = 5.230e-29
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   46 EVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQST 411
            ++LDG+ER+IK  G   +RIDG+TP   RQ  V RFQ   + R+ LLSITAAG G+TLTA S+  F ELYWTPGV+ QAEDR+HRIGQ+    I +L+    T+D  +  +I  K + L  T
Sbjct:  904 DILDGLERSIKSTGTGYMRIDGSTPAEARQTYVTRFQNSDKCRVALLSITAAGTGLTLTASSLVVFVELYWTPGVLRQAEDRVHRIGQREDVHIHYLIGKN-TLDDKMWPTICNKLEVLGET 1024          
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: B0ETK9_ENTDS (Uncharacterized protein n=8 Tax=Entamoeba TaxID=5758 RepID=B0ETK9_ENTDS)

HSP 1 Score: 120 bits (302), Expect = 6.870e-29
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 1
Query:   43 QEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLV 339
            QE+LDGIE  IK+  +E +RIDG+T    R   VDRFQ E+R+R+ +LS+TAAG GITL +     FAELYWTPGV+ QAEDR+HRIGQK+   I +L+
Sbjct:  428 QEMLDGIENYIKESNIEYIRIDGSTNASLRAKYVDRFQKEKRIRIAILSVTAAGTGITLHSADTVVFAELYWTPGVLRQAEDRVHRIGQKNDVRIFYLI 526          
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: A0A7S0TEQ7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TEQ7_HEMAN)

HSP 1 Score: 113 bits (282), Expect = 7.070e-29
Identity = 54/99 (54.55%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   43 QEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLV 339
            +EVLDG+E A++   V ++RIDG     +RQ LVD FQ +  VR+ +L +TAAGVG+TLTA S   FAEL WTPGVM QAEDR+HRIGQ+    + +L+
Sbjct:   40 REVLDGLEAAVRKAKVGLIRIDGGVDASQRQGLVDSFQKDEGVRVAVLGLTAAGVGLTLTASSTVVFAELNWTPGVMVQAEDRVHRIGQRECVNVHYLI 138          
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: A0A0B2UKP5_9MICR (Snf2/Rad54-like helicase n=1 Tax=Ordospora colligata OC4 TaxID=1354746 RepID=A0A0B2UKP5_9MICR)

HSP 1 Score: 119 bits (299), Expect = 9.660e-29
Identity = 62/128 (48.44%), Postives = 86/128 (67.19%), Query Frame = 1
Query:   46 EVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKD 429
            E++DG+    +  GV M+RIDG+TP   R +LV ++Q +  VR+ LLSITA   G+TLTAG +  FAELYW PGV+ QAEDRIHRIGQKS   + +LV+   T+D+++   +  K   L+S  GI K+
Sbjct:  392 EMMDGLNVFFESLGVSMIRIDGSTPSNSRHLLVKKYQDDNEVRLALLSITACSTGLTLTAGKLVVFAELYWNPGVLLQAEDRIHRIGQKSNVDVVYLVAKG-TVDEYVWPKLLSKLNVLESL-GIGKN 517          
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Match: Q554U4_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q554U4_DICDI)

HSP 1 Score: 119 bits (297), Expect = 3.340e-28
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1
Query:   46 EVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQST 411
            ++++G+E AIK  G   +RIDG+TP  +RQ  V +FQ     ++ LLSITAAG G+TLTA ++  F ELYWTPGV+ QAEDRIHRIGQ   C I +L+    T+D  +  +I  K + L  T
Sbjct: 1029 DIMNGLEEAIKSTGAGYIRIDGSTPAVQRQAFVTKFQNNASCKVALLSITAAGTGLTLTASNLVVFVELYWTPGVLRQAEDRIHRIGQTKTCYIHYLIGKN-TLDDRIWPTICNKLEVLGET 1149          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161404 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z711_9STRA1.670e-100100.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5JCM3_9PHAE4.590e-4061.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK86_ECTSI6.440e-4061.03Harp (Smarcal1)-related n=1 Tax=Ectocarpus silicul... [more]
D3B7Z4_POLPP3.650e-2951.69SNF2-related domain-containing protein n=1 Tax=Pol... [more]
A0A1S3JIJ9_LINUN3.830e-2948.78DNA annealing helicase and endonuclease ZRANB3-lik... [more]
D3B4N2_POLPP5.230e-2950.82Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
B0ETK9_ENTDS6.870e-2957.58Uncharacterized protein n=8 Tax=Entamoeba TaxID=57... [more]
A0A7S0TEQ7_HEMAN7.070e-2954.55Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0B2UKP5_9MICR9.660e-2948.44Snf2/Rad54-like helicase n=1 Tax=Ordospora colliga... [more]
Q554U4_DICDI3.340e-2848.36Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:44876..46143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161404|e_gw1.17.108.1
BRITEko00000,ko01000,ko03036
KEGG koko:K14440
EC3.6.4.12
Descriptionannealing helicase activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0553@1|root,KOG1000@2759|Eukaryota
Evalue1.06e-40
Seed ortholog2880.D8LK86
Hectar predicted targeting categoryother localisation
TranscriptId161726
TrackFilteredModels1
ProteinId161404
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161404gene_3314Tribonema minus UTEX_B_3156 geneContig_17 44876..46143 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3314_1exon_3314_1Tribonema minus UTEX_B_3156 exonContig_17 44876..45165 +
exon_3314_2exon_3314_2Tribonema minus UTEX_B_3156 exonContig_17 45984..46143 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3314CDS_3314Tribonema minus UTEX_B_3156 CDSContig_17 44876..45165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161404Trimin1|161404|e_gw1.17.108.1Tribonema minus UTEX_B_3156 polypeptideContig_17 44876..46143 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3314 ID=mRNA_3314|Name=jgi.p|Trimin1|161404|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=450bp|location=Sequence derived from alignment at Contig_17:44876..46143+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCAAACTTCAACACGCCCCACTTGCGCTCGTCACCTCAGGAGGT
GCTTGACGGCATTGAGCGCGCCATCAAGGACTGCGGCGTAGAGATGGTTC
GCATTGACGGCAACACGCCCAAGGGCAAGCGCCAGATGCTGGTGGACAGG
TTCCAGACGGAGCGGCGCGTGCGCATGATACTGCTGAGCATCACCGCCGC
GGGCGTGGGAATCACGCTCACGGCGGGCTCCATTGCGGCGTTCGCGGAGC
TCTACTGGACGCCCGGCGTGATGGCGCAGGCGGAGGACAGAATCCACCGC
ATCGGCCAGAAGTCCCAGTGCCTGATCCAGTTCCTTGTCAGCGACACACC
CACCATGGATCAGCACCTGCTCAGCTCCATCAGCCTCAAGCAGAAGACCC
TGCAGAGCACCACTGGCATCAGCAAAGACGCGTCTGGCTTTGCCAATGCA
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protein sequence of jgi.p|Trimin1|161404

>Trimin1|161404|e_gw1.17.108.1 ID=Trimin1|161404|e_gw1.17.108.1|Name=jgi.p|Trimin1|161404|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=150bp
MAPNFNTPHLRSSPQEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDR
FQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHR
IGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQSTTGISKDASGFANA
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mRNA from alignment at Contig_17:44876..46143+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3314 ID=mRNA_3314|Name=jgi.p|Trimin1|161404|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1268bp|location=Sequence derived from alignment at Contig_17:44876..46143+ (Tribonema minus UTEX_B_3156 )
ATGGCCCCAAACTTCAACACGCCCCACTTGCGCTCGTCACCTCAGGAGGT GCTTGACGGCATTGAGCGCGCCATCAAGGACTGCGGCGTAGAGATGGTTC GCATTGACGGCAACACGCCCAAGGGCAAGCGCCAGATGCTGGTGGACAGG TTCCAGACGGAGCGGCGCGTGCGCATGATACTGCTGAGCATCACCGCCGC GGGCGTGGGAATCACGCTCACGGCGGGCTCCATTGCGGCGTTCGCGGAGC TCTACTGGACGCCCGGCGTGATGGCGCAGGCGGAGGACAGGTGATAACTT CAACAACAAACTTCATTAAATACATGCACATATATATTGGCACCACAGGA ACGGGACCTCTGTGCTTGACATTTTGGTGACCTTTCTCGCCTGCTGAACC AACAGCAGGTTCATGGTTTGGTGTTGCCTGCAGGCTTGCTGCAGATACTT CTGTGACACACTTGTGCAACTTGCTTGCCGTGACTGTACAATGCCAGCTG CATATACATCAGCACTTGAAATGTGAGGTTCCTTACAATCATTTCAAGCA CTTGAGATTGGAGATTTCTTCCAATCAATTCCAATCACCAGGTGGCGCCA CAGTTGCTGTCCTCTGTTGCTGTGCTCCAAGTCCGTTTTGAACTATTGAT ATGCACGCGGAGCCCTCAGGTTTAGTAGGCAGTTCTTGACATAGTGAAGA TTTTCACAAGCGACGGCTTGAGCATGTCTTTTGCTGTGCTCATTCAAGGT CGCCATTCCAGTCATATTTGGCGTCAAGTTGTTAGCTCATACCTCGTGAC TTTCTGTGTAGTTGGCAAGAGCAGCAAAACCAATTGCGCATCACTTGATG TGTGTGATCTTGGCACTCCCTGCCTATTGCAGGTGTAAAGCGCATAATAC TTCTCTTGTCAACATGTTTAAGCCGGCGCTTCATGACTTGTGCTGGTAGG TTGATTCAATGGAGACTACCACATCGCTCCTGGCACGTGTTTCACAGGAG CTTGAAAAGCTACTTGAAGTCACAAACTGGCGCACTTCGCTTCAGTTCAG GTGCTGACCACGCTTACACACTGGGCTTTTTGGTGCTTGTGTGCCTGTGC CATTGCAGAATCCACCGCATCGGCCAGAAGTCCCAGTGCCTGATCCAGTT CCTTGTCAGCGACACACCCACCATGGATCAGCACCTGCTCAGCTCCATCA GCCTCAAGCAGAAGACCCTGCAGAGCACCACTGGCATCAGCAAAGACGCG TCTGGCTTTGCCAATGCA
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Coding sequence (CDS) from alignment at Contig_17:44876..46143+

>mRNA_3314 ID=mRNA_3314|Name=jgi.p|Trimin1|161404|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=450bp|location=Sequence derived from alignment at Contig_17:44876..46143+ (Tribonema minus UTEX_B_3156 )
ATGGCCCCAAACTTCAACACGCCCCACTTGCGCTCGTCACCTCAGGAGGT
GCTTGACGGCATTGAGCGCGCCATCAAGGACTGCGGCGTAGAGATGGTTC
GCATTGACGGCAACACGCCCAAGGGCAAGCGCCAGATGCTGGTGGACAGG
TTCCAGACGGAGCGGCGCGTGCGCATGATACTGCTGAGCATCACCGCCGC
GGGCGTGGGAATCACGCTCACGGCGGGCTCCATTGCGGCGTTCGCGGAGC
TCTACTGGACGCCCGGCGTGATGGCGCAGGCGGAGGACAGAATCCACCGC
ATCGGCCAGAAGTCCCAGTGCCTGATCCAGTTCCTTGTCAGCGACACACC
CACCATGGATCAGCACCTGCTCAGCTCCATCAGCCTCAAGCAGAAGACCC
TGCAGAGCACCACTGGCATCAGCAAAGACGCGTCTGGCTTTGCCAATGCA
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