mRNA_3308 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347881
Unique NamemRNA_3308
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|347881 vs. uniprot
Match: A0A836CIJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIJ6_9STRA)

HSP 1 Score: 615 bits (1586), Expect = 3.830e-218
Identity = 311/311 (100.00%), Postives = 311/311 (100.00%), Query Frame = 1 
Query:  310 ASGEVTPPAELSPLHVGSVLHAPTRYSQKAEEEKARSKRNRMTQKAACITATARHGADVADANSALAQLQGLTAKAFATEGYTILPHHPRLQALARAILDAVPADMNPDVAPWEKVFNTVDGTRKQVKMEDVKRATSKYMPVKRLLVDELAPVVNDILLGLSGLEVVKPALLLSKRTARRDALAQQPHRDWPLKQLLAAIGNGQDGFPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLNAGDIVLFHGALVHAGAGYVGKPGTYHLRVHFYTQSAHGRSAWTIFNETEELQLIDEDQCRRTRR 1242
            ASGEVTPPAELSPLHVGSVLHAPTRYSQKAEEEKARSKRNRMTQKAACITATARHGADVADANSALAQLQGLTAKAFATEGYTILPHHPRLQALARAILDAVPADMNPDVAPWEKVFNTVDGTRKQVKMEDVKRATSKYMPVKRLLVDELAPVVNDILLGLSGLEVVKPALLLSKRTARRDALAQQPHRDWPLKQLLAAIGNGQDGFPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLNAGDIVLFHGALVHAGAGYVGKPGTYHLRVHFYTQSAHGRSAWTIFNETEELQLIDEDQCRRTRR
Sbjct:  104 ASGEVTPPAELSPLHVGSVLHAPTRYSQKAEEEKARSKRNRMTQKAACITATARHGADVADANSALAQLQGLTAKAFATEGYTILPHHPRLQALARAILDAVPADMNPDVAPWEKVFNTVDGTRKQVKMEDVKRATSKYMPVKRLLVDELAPVVNDILLGLSGLEVVKPALLLSKRTARRDALAQQPHRDWPLKQLLAAIGNGQDGFPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLNAGDIVLFHGALVHAGAGYVGKPGTYHLRVHFYTQSAHGRSAWTIFNETEELQLIDEDQCRRTRR 414
[Close]
BLAST of jgi.p|Trimin1|347881 vs. uniprot
Match: A0A835YNV3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNV3_9STRA)

HSP 1 Score: 257 bits (657), Expect = 9.640e-77
Identity = 130/241 (53.94%), Postives = 168/241 (69.71%), Query Frame = 1 
Query:  505 LAQLQGLTAKAFATEGYTILPHHPRLQALARAILDAVPADMNPDVAPWEKVFNTVDGTRKQVKMEDVKRATSKYMPVKRLLVDELAPVVNDILLGLSGLEVVKPALLLSKRTARRDALAQQPHRDWPLKQLLAAIGNGQDGFPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLNAGDIVLFHGALVHAGAGYVGKPGTYHLRVHFYTQSAHGRSAWTIFNETEELQLIDEDQC 1227
            +AQLQ  T ++ AT+GY ++P +    ALAR +L A+P  +N    PWE VFNTV GTR QVK+ DV    S +  VK+L++ EL P++N+ LLGLS +EV +PA+LLSK+T    A+AQ PHRDWP+++L  A+    DGFPVGVLLSL DGG LH+WPGS D    Q ++  DR+++ L AGDIVLFHGA+VH GAGY G  G YHLR+HFYTQS+HG + W I NETE     +  QC
Sbjct:  216 VAQLQDTTTRSLATDGYYVVPGNETFAALARRLLTAMPTTINTAADPWENVFNTVPGTRCQVKLPDV-GPRSPFAAVKQLVMKELVPLINETLLGLSDVEVTRPAILLSKKTPAEHAIAQGPHRDWPVRRLKNALKK-HDGFPVGVLLSLHDGGILHLWPGSFDA---QEVREQDRISVNLRAGDIVLFHGAIVHEGAGYQGAAGEYHLRLHFYTQSSHGVNPWPISNETEHCHTSEWHQC 451
[Close]
BLAST of jgi.p|Trimin1|347881 vs. uniprot
Match: A0A836CGF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF2_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.040e-75
Identity = 129/236 (54.66%), Postives = 169/236 (71.61%), Query Frame = 1 
Query:  505 LAQLQGLTAKAFATEGYTILPHHPRLQALARAILDAVPADMNPDVAPWEKVFNTVDGTRKQVKMEDVKRATSKYMPVKRLLVDELAPVVNDILLGLSGLEVVKPALLLSKRTARRDALAQQPHRDWPLKQLLAAIGNGQDGFPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLNAGDIVLFHGALVHAGAGYVGKPGTYHLRVHFYTQSAHGRSAWTIFNETEELQLI 1212
            +AQLQ  T ++ AT+GY ++P +    ALA+ +L A+P  +N    PWE VFNTV GTR QVK+ DV  A S +  VK+L++ EL P++N+ LLGLS +EV +PA+LLSK+T    A+AQ PHRDWP+++L  A+    DGFPVGVLLSL DGG LH+WPGS D    Q ++  DR+++ L AGDIVLFHGA+VH GAGY G  G YHLR+HFYTQSAHG + W I NETE ++ +
Sbjct:  336 VAQLQDTTTRSLATDGYCVVPGNETFAALAQRLLTAMPTTINTAADPWENVFNTVPGTRCQVKLPDV-GARSPFAAVKQLVMKELVPLINETLLGLSDVEVTRPAILLSKKTPAEHAIAQGPHRDWPVRRLKYALKK-HDGFPVGVLLSLHDGGTLHLWPGSFDA---QEVREQDRISVNLRAGDIVLFHGAVVHEGAGYQGAAGEYHLRLHFYTQSAHGVNPWPISNETEPVRKM 566
[Close]
BLAST of jgi.p|Trimin1|347881 vs. uniprot
Match: A0A836CEY9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY9_9STRA)

HSP 1 Score: 246 bits (629), Expect = 5.800e-73
Identity = 125/235 (53.19%), Postives = 161/235 (68.51%), Query Frame = 1 
Query:  505 LAQLQGLTAKAFATEGYTILPHHPRLQALARAILDAVPADMNPDVAPWEKVFNTVDGTRKQVKMEDVKRATSKYMPVKRLLVDELAPVVNDILLGLSGLEVVKPALLLSKRTARRDALAQQPHRDWPLKQLLAAIGNGQDGFPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLNAGDIVLFHGALVHAGAGYVGKPGTYHLRVHFYTQSAHGRSAWTIFNETEELQL 1209
            LAQL+  T +A AT+G+ +L  +P    L + +L  VP+ +N    PWE +FNTV GTR Q+K+ DV  A S Y  VK L++ ELAP+++  L+GLS   V +PALLLSK T+  DA++Q PHRDWPLK+L  A+    DGFPVGVL+SL D G+LH+WP S D      +   DR+TI LNAGDI++FHGALVH GAGY+G+ G YHLR+HFYTQS  G + W I NETE   L
Sbjct:   94 LAQLESATTRALATDGFCVLKQNPAFIDLTQRLLAVVPSTINTAARPWENIFNTVPGTRCQLKLTDV-GARSPYAEVKELVLHELAPLIDRTLMGLSHKGVYRPALLLSKMTSAADAMSQGPHRDWPLKRLKTAL-RVNDGFPVGVLMSLHDNGKLHLWPRSFDATH---VNADDRITITLNAGDIIIFHGALVHEGAGYIGEEGEYHLRLHFYTQSTRGANVWQISNETEHASL 323
[Close]
BLAST of jgi.p|Trimin1|347881 vs. uniprot
Match: A0A836CHB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB8_9STRA)

HSP 1 Score: 215 bits (548), Expect = 2.070e-64
Identity = 107/200 (53.50%), Postives = 141/200 (70.50%), Query Frame = 1 
Query:  613 VPADMNPDVAPWEKVFNTVDGTRKQVKMEDVKRATSKYMPVKRLLVDELAPVVNDILLGLSGLEVVKPALLLSKRTARRDALAQQPHRDWPLKQLLAAIGNGQDGFPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLNAGDIVLFHGALVHAGAGYVGKPGTYHLRVHFYTQSAHGRSAWTIFNETEELQLI 1212
            +P  +N    PWE VFN V GTR QVK+ DV  A S +  VK+L++ EL P++N+ LLGLS +EV +PA+LLSK+T    A+ Q PHRDWP ++L  A+    DGFPVGVLLSL +GG LH+WPGS D    + ++  DR++++L A DIV+FHGA+VH GAGY G  G +HLR+HFYTQSA G + W I NETE ++ I
Sbjct:    1 MPTTINTAADPWENVFNAVPGTRCQVKLPDV-GARSPFAAVKQLVMKELVPLINETLLGLSDMEVTRPAILLSKKTPAEHAITQGPHRDWPTRRLKNALKK-HDGFPVGVLLSLHNGGVLHLWPGSFDA---EEVREQDRISVKLQARDIVMFHGAIVHEGAGYQGAVGEHHLRLHFYTQSARGINPWPISNETEHVRTI 195
[Close]
BLAST of jgi.p|Trimin1|347881 vs. uniprot
Match: A0A835YKI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKI9_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.410e-59
Identity = 102/180 (56.67%), Postives = 129/180 (71.67%), Query Frame = 1 
Query:  643 PWEKVFNTVDGTRKQVKMEDVKRATSKYMPVKRLLVDELAPVVNDILLGLSGLEVVKPALLLSKRTARRDALAQQPHRDWPLKQLLAAIGNGQDGFPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLNAGDIVLFHGALVHAGAGYVGKPGTYHLRVHFYTQSAHGRSAWTI 1182
            PWE++FN V  TR QVK+ DV  + S ++  KRL+  EL P++N  LLGL   EV +PALLLS +T++  A AQ PHRDW L  L AA+ +    FPVGV++SL D G+LHVWPGS D  +   +   DRVT+RL+AGDI+LFHGAL+HAGAGY G  G YHLR+HFYTQ+AHGR AW +
Sbjct:   21 PWERIFNPVH-TRHQVKLFDV-ASRSPFVKAKRLVEQELGPLINRTLLGLGDREVTRPALLLSNKTSKELAHAQPPHRDWMLNNLKAALKHNNS-FPVGVIISLHDSGELHVWPGSFDATE---VNEKDRVTVRLDAGDIILFHGALIHAGAGYEGDDGEYHLRLHFYTQTAHGREAWPV 194
[Close]
BLAST of jgi.p|Trimin1|347881 vs. uniprot
Match: A0A835Z366_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z366_9STRA)

HSP 1 Score: 194 bits (493), Expect = 5.520e-55
Identity = 100/236 (42.37%), Postives = 145/236 (61.44%), Query Frame = 1 
Query:  505 LAQLQGLTAKAFATEGYTILPHHPRLQALARAILDAVPADMNPDVAPWEKVFNTVDGTRKQVKMEDVKRATSKYMPVKRLLVDELAPVVNDILLGLSGLEVVKPALLLSKRTARRDALAQQPHRDWPLKQLLAAIGNGQDGFPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLNAGDIVLFHGALVHAGAGYVGKPGTYHLRVHFYTQSAHGRSAWTIFNETEELQLI 1212
            +AQL+    +A +T+GY +   +   ++ A  +L  +P D++     W ++FN+V+GTR Q+ + +V +  S Y   K+  + E+AP++N  LLG    +VVK A+LLSK+T+  DAL+Q PHRDWPL                    SL D G  H+WPGS D      ++  +R+T+ LNAGD++LFHGALVH GAGY G  G YH+R+HFYTQSAHG +AW I +ETE + L+
Sbjct:   78 IAQLEATAIRALSTDGYCVFRGNDAFRSKALGLLAEMPDDIDTSTH-WRRIFNSVEGTRYQLPLPEVGKR-SPYTKAKQFALSEIAPLINRTLLGSRLKKVVKAAILLSKKTSAADALSQGPHRDWPLD-------------------SLHDNGAFHLWPGSFDATS---VRAQERITVHLNAGDVILFHGALVHEGAGYEGAAGEYHMRLHFYTQSAHGPNAWPIADETERVALV 289
[Close]
BLAST of jgi.p|Trimin1|347881 vs. uniprot
Match: A0A835YIS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS5_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.760e-46
Identity = 95/196 (48.47%), Postives = 126/196 (64.29%), Query Frame = 1 
Query:  643 PWEKVFNTVDGTRKQVKMEDVKRATSKYMPVKRLLVDELAPVVNDILLGLSGLEVVKPALLLSKRTARRDALAQQ----PHRDWPLKQLLAAIGNGQDGFPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLNAGDIVLFHGALVHAGAGYVGKPGTYHLRVHFYTQSAHGRSAWTIFNETEELQLIDE 1218
            PWE++ N V  TR QVK+ DV  + S  +  KRL+  EL P++N  LLGL G    + +   S  T ++D +  +    P     L  L AA+ +  D FPVGV +SL DGG+LHVWPGS DT +   +   DRVT+RL+A DI+LFHGAL+HAGAGY G  G YHLR+H+YTQ+AHGR AW + N+TE +  ID+
Sbjct:   21 PWERIVNPVH-TRHQVKLFDV-ASRSPLVKAKRLVEQELGPLINRTLLGLGG----QGSDAASTSTFQQDVVGARTCAAPSPRLMLNNLKAALKHN-DSFPVGVNISLHDGGELHVWPGSFDTTE---VNKKDRVTVRLDARDIILFHGALIHAGAGYEGDDGEYHLRLHYYTQTAHGRDAWPVVNKTELVGHIDD 206
[Close]
BLAST of jgi.p|Trimin1|347881 vs. uniprot
Match: A0A835ZF14_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF14_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.680e-42
Identity = 100/253 (39.53%), Postives = 148/253 (58.50%), Query Frame = 1 
Query:  484 VADANSALAQLQGLTAKAFATEGYTILPHHPR---LQALARAILDAVPADMNPDVAP-WEKVFNTVDGTRKQVKMEDVKRATSKYMPVKRLLVDELAPVVNDILLGLSGLEVVKPALLLSKRTARRDALAQQPHRDWPLKQLLAAIGNGQDGFPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLNAGDIVLFHGALVHAGAGYV---GKPG-TYHLRVHFYTQSAHGR-SAWTIFNETEELQLID 1215
            +ADA  A AQL+    K  A  GYT++        L ++   +L  +P     +V   W  + N V   R  +K+ ++ +   +Y+  K +++++L+P  ND+L G     V KP+ LLS++T + DAL Q PHRDW L Q+L A     DG PVG+++SLQDGG  H+WP SHD    Q ++ +  + I+ NAGDI+LFHGALV  GAGY    G+ G  YHLR+HFY +   G+ +AW + N+ E + LI+
Sbjct:  189 MADARVAKAQLEANLTKLLAVPGYTVVRRSEGDDCLSSIVEELLKTLPELTEKEVTTKWSVLRNNVLNCRYHMKLFEMVKG--RYLGAKNVVMNKLSPYNNDVLFGNRDRAVHKPSFLLSRKTEKADALGQGPHRDWVLNQILDAQQT-TDGCPVGIIISLQDGGAFHLWPNSHDA---QEVRANGMMKIQFNAGDILLFHGALVREGAGYELAEGEQGWAYHLRLHFYLRITIGKDNAWEVDNQFELVPLIE 435
[Close]
BLAST of jgi.p|Trimin1|347881 vs. uniprot
Match: A0A836CIB9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIB9_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.750e-20
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:  928 FPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLNAGDIVLFHGALVHAGAGYVGKPGTYHLRVHFYTQSA 1158
            FPVGVL+SL DGG  H+W GS D  +   ++  DR+TIRL+AGD+V+FH ALVH GAGY G  G  H+R+HFYTQSA
Sbjct:   68 FPVGVLMSLHDGGAFHLWAGSFDATE---VRKEDRITIRLDAGDVVIFHSALVHEGAGYEGDEGDVHMRLHFYTQSA 141
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347881 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A836CIJ6_9STRA3.830e-218100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YNV3_9STRA9.640e-7753.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CGF2_9STRA1.040e-7554.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CEY9_9STRA5.800e-7353.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHB8_9STRA2.070e-6453.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKI9_9STRA2.410e-5956.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z366_9STRA5.520e-5542.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YIS5_9STRA2.760e-4648.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZF14_9STRA1.680e-4239.53Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CIB9_9STRA1.750e-2061.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:5077..10707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347881|estExt_Genemark1.C_Ctg_170002
Hectar predicted targeting categoryother localisation
TranscriptId348203
TrackFilteredModels1
ProteinId347881
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347881gene_3308Tribonema minus UTEX_B_3156 geneContig_17 5077..10707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347881Trimin1|347881|estExt_Genemark1.C_Ctg_170002Tribonema minus UTEX_B_3156 polypeptideContig_17 5077..10552 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3308_1exon_3308_1Tribonema minus UTEX_B_3156 exonContig_17 5077..5110 +
exon_3308_2exon_3308_2Tribonema minus UTEX_B_3156 exonContig_17 6722..6874 +
exon_3308_3exon_3308_3Tribonema minus UTEX_B_3156 exonContig_17 6913..7099 +
exon_3308_4exon_3308_4Tribonema minus UTEX_B_3156 exonContig_17 8730..8806 +
exon_3308_5exon_3308_5Tribonema minus UTEX_B_3156 exonContig_17 8879..9320 +
exon_3308_6exon_3308_6Tribonema minus UTEX_B_3156 exonContig_17 10201..10707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3308CDS_3308Tribonema minus UTEX_B_3156 CDSContig_17 5077..5110 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3308UTR3_3308Tribonema minus UTEX_B_3156 three_prime_UTRContig_17 10553..10707 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3308 ID=mRNA_3308|Name=jgi.p|Trimin1|347881|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1400bp|location=Sequence derived from alignment at Contig_17:5077..10707+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCAGAGCTTGAAACTGGCTTTCTGGAACCCCCCTGCAGCAGCGCC
CGCGGCGGCCATCGTCGAAGCGGCGCACCTCAACGGCGCCGCCGCAGCGG
GCACTGGCGCAGCAGCAGCAGCGGCGCTTTACGGCGCGCCGCCGCCGCCG
CCGCCCGCTGCTGCCAAGAAGCCAGCCGGCAAGAAGCGGACCCCCGAAGA
AGAAGCCGCACGGCAACGCGGGGAAGAAGCGGGGGCCGAAGGGGGGGGCA
GCGGCGGCGCGGGGATCGCAGCGGCGGCGGCAGCGGTGGCGGCGGCTGCG
GCGGCGTCGGCGTCGGGGGAGGTCACGCCGCCTGCGGAGCTCTCGCCGCT
GCACGTGGGCTCTGTGCTGCATGCGCCGACGCGCTACTCACAAAAGGCAG
AGGAGGAGAAGGCGAGATCCAAACGGAACCGCATGACGCAGAAAGCTGCA
TGCATCACCGCTACGGCGAGGCACGGCGCAGACGTTGCCGATGCCAATTC
GGCTCTAGCTCAGCTGCAGGGCCTCACCGCCAAGGCATTTGCGACAGAAG
GGTACACCATCCTCCCGCACCACCCCCGACTACAGGCCCTGGCGAGGGCG
ATCCTGGATGCGGTGCCGGCCGACATGAATCCTGACGTCGCGCCTTGGGA
GAAGGTCTTCAACACGGTAGATGGCACCAGGAAGCAGGTGAAGATGGAGG
ACGTGAAGAGGGCCACTTCCAAGTACATGCCCGTCAAGCGGCTCCTCGTG
GATGAACTCGCCCCTGTCGTCAACGACATACTGCTGGGGTTGAGCGGCTT
GGAGGTAGTGAAACCTGCGCTCCTGCTCTCCAAGCGGACGGCCCGGCGGG
ATGCGCTCGCGCAGCAGCCTCACCGTGACTGGCCGCTCAAACAGTTGCTG
GCGGCGATCGGAAATGGACAGGATGGCTTTCCGGTGGGTGTTCTGCTAAG
CCTACAGGACGGCGGGCAGCTGCACGTGTGGCCCGGCAGCCACGACACGC
CGAAGGAGCAGCCAATCAAGCTCTCGGACCGCGTCACCATTCGATTGAAT
GCCGGAGACATCGTTCTGTTCCACGGAGCGCTGGTGCATGCTGGCGCAGG
CTACGTGGGGAAGCCCGGGACGTACCACCTGCGTGTGCACTTCTACACGC
AGAGTGCGCACGGCAGGTCGGCGTGGACCATATTCAATGAGACGGAGGAG
CTGCAGCTGATTGATGAGGATCAGTGTAGGAGGACACGACGGTGAGCCAG
GCATCACGCTCTGTGCAAGGGCGGCGCTCTCCCGGTTTCTGTCGCTTGCA
TTTGGCACATCAGCCGCACAGCGGCGGTGGCAGCCTAGGTGACTATGGTC
ACAGTCTTAAAGACTGGTGTTGCAGCGCTCAGCAACAAGATATATGCTCC
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protein sequence of jgi.p|Trimin1|347881

>Trimin1|347881|estExt_Genemark1.C_Ctg_170002 ID=Trimin1|347881|estExt_Genemark1.C_Ctg_170002|Name=jgi.p|Trimin1|347881|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=415bp
MLQSLKLAFWNPPAAAPAAAIVEAAHLNGAAAAGTGAAAAAALYGAPPPP
PPAAAKKPAGKKRTPEEEAARQRGEEAGAEGGGSGGAGIAAAAAAVAAAA
AASASGEVTPPAELSPLHVGSVLHAPTRYSQKAEEEKARSKRNRMTQKAA
CITATARHGADVADANSALAQLQGLTAKAFATEGYTILPHHPRLQALARA
ILDAVPADMNPDVAPWEKVFNTVDGTRKQVKMEDVKRATSKYMPVKRLLV
DELAPVVNDILLGLSGLEVVKPALLLSKRTARRDALAQQPHRDWPLKQLL
AAIGNGQDGFPVGVLLSLQDGGQLHVWPGSHDTPKEQPIKLSDRVTIRLN
AGDIVLFHGALVHAGAGYVGKPGTYHLRVHFYTQSAHGRSAWTIFNETEE
LQLIDEDQCRRTRR*
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mRNA from alignment at Contig_17:5077..10707+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3308 ID=mRNA_3308|Name=jgi.p|Trimin1|347881|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5631bp|location=Sequence derived from alignment at Contig_17:5077..10707+ (Tribonema minus UTEX_B_3156 )
ATGCTGCAGAGCTTGAAACTGGCTTTCTGGAACCGTAAGTGATGCCAATA
CCGATTCCAATTGCTGCACCTACGACAGCACAGGTCGCACGTGGTTGAAG
TTCAGCATTTGGGCTCCTGGACTAGCTGACAAGCTACGCGACAGCAGCCA
AGCCATGCCTACTCTGTGTCTAATCTGTGCAAGTGCTGCTACTACTGGGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGGTAACAAATATAGGA
CATTGCTGTTGCTGCTACTGCTGCTGCTGCTGTTGTCGCTGCGGCGCTGC
AGCACAGTGCTGCTCTGCTAGCCTTGCTGCTGTTGCTGATGCTGGTGCTG
CCGCTGCCGCTGCATTGTTGCCGCCTCTGCCGCTGCTGCTTGCTCATTAA
ATGCTAGTAATATTGATTTTTTGTATGTGATTGCTGTGCAGGTTGCAGCA
CGGCACCTATGATGCACATCGCTGCAGCTGCCAGGGCCATTTTCTGCTTG
GTGGACATTCCCTTAGAAGCCGCGATCATGGTTGGACCGGCTAACGCTGA
GTCCTGCTGTTCTGCAGGCGAACGACAATGTCACGTCGGTTACGTTCCTC
AACTTGAAGTGCCTAACCCTAATGAAAAGTTATTCAAGTAACTTGAAGAC
AAGCACCTGCAGAGTCGCTGACAGATTGTCAATGTTTTCCACGGTTAACG
ACCGGCATCTAGGGGTTGCAACATGGTGTATTTTCCAACAACCTGTTGTG
GATTTTTTTTTGTGGATTTCACGATGTATGCAATACCGCCCATTATTGAT
TATCTCATGTGTCTGCATGTTAACATTTTGGCTCGTCTCGTAGAGGCCAT
AAGGCAGCTACTGCAGTAATGGCAAGAAAATGCATCACACAGCTATAGCA
AGAGACGGCGACTCTGTCAGTCGATGTGGTCGATGCGCTAGTGCAAGAGC
TGCATGTTCAACTTGCTGATGCACACAATGAGCGCGACCGTGCTCTAAAG
CACGCGCTCAACGTCAGGACCATGTACGGTGGCTTCAACCGACAACAGCA
ACTACAGCAGATGGGGTCAGGCAGATTGGGCGATGCCAGTCACAGCCCAC
ACATCTAGTAAGCACAGTGGTCACTGTTTTGAGCAGCTGCAATTATGGCA
CAGTTACTTGTCAATGAGATTTGCTATCATCATGGAGCACACAACAGCAC
CCAATGCTTGTCTTATACCCGATGCACATGTGCATGAGTTGACATTGGTG
GCAACATGTGCCGCTCAGCGTTGCGTGTTCCACGCAGCTTCTTTGAAGCT
TGCGGCGTCGCGCTGGAATCGAAAGACTAACCTCTCATAACATCCTCTTT
GCGCCTAAAACACATCGCATGTCGAGCGAGAGCGCATACATACATCCTTT
TGCAACCAGATGGAGTCGCAGCAGCAGAAATGCCACACGCCACCCGACAG
TGCAACGGCGCGAAGACTATCACCATTGATTACGGCATGGCTGCTCTTAC
AAATACTGACGCTGTGCTCTCTGCCTACCTATCAGGCATCTGCCGCACCG
TGAAACCGTCTGCACCGTCCGCACCACCCCATCCACGACGAACACCTTCT
CACCATCAAGCACTGCACTGCCCCTCTGACACACAACACGCGCAGCCCCT
GCAGCAGCGCCCGCGGCGGCCATCGTCGAAGCGGCGCACCTCAACGGCGC
CGCCGCAGCGGGCACTGGCGCAGCAGCAGCAGCGGCGCTTTACGGCGCGC
CGCCGCCGCCGCCGCCCGCTGCTGCCAAGAAGCCAGCCGGCAAGAAGCGT
GAACTGGAGGAAGGGCCCCCCCCTGAAGTCCCCCAGGGACCCCCGAAGAA
GAAGCCGCACGGCAACGCGGGGAAGAAGCGGGGGCCGAAGGGGGGGGCAG
CGGCGGCGCGGGGATCGCAGCGGCGGCGGCAGCGGTGGCGGCGGCTGCGG
CGGCGTCGGCGTCGGGGGAGGTCACGCCGCCTGCGGAGCTCTCGCCGCTG
CACGTGGGCTCTGTGCTGCATGCGTACCGCCGGGAGGGGCTTATCATACT
ATAGTATACTACAAGTGAGTGAGCGCGTGCAGGAAGGAGCCTTGCTGTCG
CAGCAGGCGGCGGCTTGACGGCAGTGGGCAGCGGTGTGGTCGGCGCTGCG
AATGCCGCACCTGCAGCCTTGTAGGAGTCAGGGTGTGCTGCTGTTCAAGA
TGGAGCAAAATTCCTCAATGTCGCAGAGAAGACTGCAGCCACGGGCAAGA
AGCGGGGAAAGTGCTCATGAGCGCAAAATGTTTGGAAATTTGTGACGAGT
GGGCATAGCAGCAATAGAGCAGAAGGGGGGGGCTGGCCCGGGCGGAAGAG
GCGGGGCGGGAGGCACACGTGCACACCATATTTCATGCCGTCATGTGCAT
ATGTATCCCTATTACTTGTATATACATATGCATCAGACTGACAGCCAAAC
AGCCGTGTGCTGACGGTACGTCTACGCATTCATCACACTCTGTCATGCAC
ATTGCATAATCTTGGCCAAGCGTCCAAGCTGGGTACTAGGTAGCATGTTA
CAGCAAAAAAAAAAAAAAGGTTAGCGGCAGAATTGCAGAAACCGCCGCCG
CCGCTGCCTGCGCAATGCCCTGTGTCCGTGAGTAGTTCTTCGCAGTGCAG
ACTAGGCTGCTGCGTTGAAGCAAACTTTTCGATCGCATAGGCAACCCGAC
CTTCCTCAGGCCTCTATTTATAAAAACAAGCCCACAAGTACTACCTCTGC
GCCATCAATCCGGTGGGTACCGGGCTGGACCTGCTTGTGCCAAACCCACT
CAGTGGTCGCGAAAGGGGTGCGATTGATGGCAGATCCACTAGTGCCGGCA
TACCTTCTGCCATTGCGTGCAGTGGTGCTGCAACAGCGGCAGCGTATTAA
TGCTACGAACCACTTCCCTGGCACTTGCCAGCGGTGGCACTGTCGTCTGA
ACGTGTCTGCGCGTGTGTGCTGCCATCATGCTGACTGATACGCCATGGCT
TAGCGTCACAGCACTGCTACCGCCGCTGCTGCCGAGCAAAGCCGCTGCAG
CAGCCGCGCAATGGACCAGCGCGCATCCCATCCACGTTAACCAAGCACTT
GAAGTTTTATGCTATGTCCTGGACCGCATGGTCCGAGCACACAATACAAT
GGGCTTTGCGATAGCTACAACTACGGGGCGCCGGCGGATCGGCGCTGGCC
GGCGAGGGCCGCGGCACCTGTAACAAGGCCATGCGGCGATAGGCGTTGAC
GTCGCCATCAGGGGCTATGATCCGCTTTCCAGTTGTCTCACAACGCGTTT
GCGCGCGCTGTGCGGAATCGTGCACGAACGAGTGCTTGAAGTTCATTTTG
AAGTTGAGGATTAAAACCCTTTTCTCGTCTTCACTGTAGTATCTGCCGTG
AACTACGACCGGCAAGCATAACCCTCAGCACCGCTGCAGCAGCAGCACCT
GCTGCAGCGACAACACTCAATCCAGAATCAGGGGCGCGCGCTTCCATACA
AATGGCGCCTGCAGGCAGCGCCCTGCCTTCAGGAAGTGCAGCAGGTGCTG
TCCTTCAGCAAGTCCAACCTGTGGAGGCCGTTTGTCGTGGGACCTCCGAT
GCTGCTGCAGGCTATGCTATGATGTTGGAGACTCCTCCGCCTCCTGCTAA
AAGGCCGACGCGCTACTCACAAAAGGCAGAGGAGGAGAAGGCGAGATCCA
AACGGAACCGCATGACGCAGAAAGCTGCATGTGAGCTGCAGTATGCGATA
TCTCGGCGGGATGCATTGGACCAGCGTGCGGCTGCAACATCTGTGGCCCG
AGGCATCACCGCTACGGCGAGGCACGGCGCAGACGTTGCCGATGCCAATT
CGGCTCTAGCTCAGCTGCAGGGCCTCACCGCCAAGGCATTTGCGACAGAA
GGGTACACCATCCTCCCGCACCACCCCCGACTACAGGCCCTGGCGAGGGC
GATCCTGGATGCGGTGCCGGCCGACATGAATCCTGACGTCGCGCCTTGGG
AGAAGGTCTTCAACACGGTAGATGGCACCAGGAAGCAGGTGAAGATGGAG
GACGTGAAGAGGGCCACTTCCAAGTACATGCCCGTCAAGCGGCTCCTCGT
GGATGAACTCGCCCCTGTCGTCAACGACATACTGCTGGGGTTGAGCGGCT
TGGAGGTAGTGAAACCTGCGCTCCTGCTCTCCAAGCGGACGGCCCGGCGG
GATGCGCTCGCGCAGCAGCCTCACCGTGACTGGCCGCTCAAACAGTGAGT
TTGATCTCATGGTGGTTTGTGCTGCGCGTGCGTTTTTGTGGCAGATTGTG
TAAGCCTGTAGCAGGCGTGGTGTGCGTCACAGTAATTCTGCATCTCAAAT
CAACAGGTCCCAATGTGATTAATGTTTTGTTGGCCACTAGCACCTGCGTG
GGGGCGATAGGGTTGGAGGGTGAGCAAATTGCTTGTGGGGTGATGGGCAG
GCATTTCGCTACCGCCTGCTATGGCCTACAGCGCACACCGGTCTGTTGCC
CTTTAGCCACGGTTAGCGCCTAACCCTAACCGACCGCCCTAGCCTAGGCT
TGCCATGACATCAGGGCCAGGGTGCCTCAACACATTACCATAGTACATGC
TTTCATAAAGCTTGCCGTGGCGGCACTTGCAGCCCGCTGCTCGACGTGGG
TGCAAACTGTCGCCCCCGTCGCCGTGCGAGTCACTGTACGGTTCCCTGGC
CGCTGTAATCATGCCGCTGTAATCATGACAGATGGTAGTATTGGCATCAC
ACAGCAGTTGCTTAGCATTGGGTGCCGGTCTCAGACATGCTTGGCGAAGC
ATCACCCATATGCTTCTTTGTTTCTGTCTTGATTTCTTCAACTCTACTGC
TGGTTTTCACCTGCAGTAGACACTGGTGTGCAGGCGTTGCATGCATGCGG
CGCCATGCCGCAGTATTCATCTGTAGATGCACGCATCATGCACTTGGCGG
TTTTTACATAAAATCATCACCTGTGATACACTGTGTGTTGTGCTCTTGCG
CAGCATCGCTCACCCTTATCTTCTGTTACTACTCAGCCCCCCCCCCCCCC
CTGCCCCCCCCCCCTGCCCACTTTGCTATACTTGCGCTAATCGCGTGTCA
TTGAACCGATGTGCATCCTTGCAGGTTGCTGGCGGCGATCGGAAATGGAC
AGGATGGCTTTCCGGTGGGTGTTCTGCTAAGCCTACAGGACGGCGGGCAG
CTGCACGTGTGGCCCGGCAGCCACGACACGCCGAAGGAGCAGCCAATCAA
GCTCTCGGACCGCGTCACCATTCGATTGAATGCCGGAGACATCGTTCTGT
TCCACGGAGCGCTGGTGCATGCTGGCGCAGGCTACGTGGGGAAGCCCGGG
ACGTACCACCTGCGTGTGCACTTCTACACGCAGAGTGCGCACGGCAGGTC
GGCGTGGACCATATTCAATGAGACGGAGGAGCTGCAGCTGATTGATGAGG
ATCAGTGTAGGAGGACACGACGGTGAGCCAGGCATCACGCTCTGTGCAAG
GGCGGCGCTCTCCCGGTTTCTGTCGCTTGCATTTGGCACATCAGCCGCAC
AGCGGCGGTGGCAGCCTAGGTGACTATGGTCACAGTCTTAAAGACTGGTG
TTGCAGCGCTCAGCAACAAGATATATGCTCC
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Coding sequence (CDS) from alignment at Contig_17:5077..10707+

>mRNA_3308 ID=mRNA_3308|Name=jgi.p|Trimin1|347881|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1245bp|location=Sequence derived from alignment at Contig_17:5077..10707+ (Tribonema minus UTEX_B_3156 )
ATGCTGCAGAGCTTGAAACTGGCTTTCTGGAACCCCCCTGCAGCAGCGCC
CGCGGCGGCCATCGTCGAAGCGGCGCACCTCAACGGCGCCGCCGCAGCGG
GCACTGGCGCAGCAGCAGCAGCGGCGCTTTACGGCGCGCCGCCGCCGCCG
CCGCCCGCTGCTGCCAAGAAGCCAGCCGGCAAGAAGCGGACCCCCGAAGA
AGAAGCCGCACGGCAACGCGGGGAAGAAGCGGGGGCCGAAGGGGGGGGCA
GCGGCGGCGCGGGGATCGCAGCGGCGGCGGCAGCGGTGGCGGCGGCTGCG
GCGGCGTCGGCGTCGGGGGAGGTCACGCCGCCTGCGGAGCTCTCGCCGCT
GCACGTGGGCTCTGTGCTGCATGCGCCGACGCGCTACTCACAAAAGGCAG
AGGAGGAGAAGGCGAGATCCAAACGGAACCGCATGACGCAGAAAGCTGCA
TGCATCACCGCTACGGCGAGGCACGGCGCAGACGTTGCCGATGCCAATTC
GGCTCTAGCTCAGCTGCAGGGCCTCACCGCCAAGGCATTTGCGACAGAAG
GGTACACCATCCTCCCGCACCACCCCCGACTACAGGCCCTGGCGAGGGCG
ATCCTGGATGCGGTGCCGGCCGACATGAATCCTGACGTCGCGCCTTGGGA
GAAGGTCTTCAACACGGTAGATGGCACCAGGAAGCAGGTGAAGATGGAGG
ACGTGAAGAGGGCCACTTCCAAGTACATGCCCGTCAAGCGGCTCCTCGTG
GATGAACTCGCCCCTGTCGTCAACGACATACTGCTGGGGTTGAGCGGCTT
GGAGGTAGTGAAACCTGCGCTCCTGCTCTCCAAGCGGACGGCCCGGCGGG
ATGCGCTCGCGCAGCAGCCTCACCGTGACTGGCCGCTCAAACAGTTGCTG
GCGGCGATCGGAAATGGACAGGATGGCTTTCCGGTGGGTGTTCTGCTAAG
CCTACAGGACGGCGGGCAGCTGCACGTGTGGCCCGGCAGCCACGACACGC
CGAAGGAGCAGCCAATCAAGCTCTCGGACCGCGTCACCATTCGATTGAAT
GCCGGAGACATCGTTCTGTTCCACGGAGCGCTGGTGCATGCTGGCGCAGG
CTACGTGGGGAAGCCCGGGACGTACCACCTGCGTGTGCACTTCTACACGC
AGAGTGCGCACGGCAGGTCGGCGTGGACCATATTCAATGAGACGGAGGAG
CTGCAGCTGATTGATGAGGATCAGTGTAGGAGGACACGACGGTGA
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