mRNA_3288 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160607
Unique NamemRNA_3288
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|160607 vs. uniprot
Match: A0A835Z8N0_9STRA (Glutamine cyclotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N0_9STRA)

HSP 1 Score: 559 bits (1441), Expect = 6.070e-202
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1
Query:    1 MLELDVEPLRSWQKGFDTSRYTSPSLQYEVIEVYRHDAWAFTQGLDWSNGFLYEGTGSCGKSKSEASRLPTMSRVLLRRQLPDKYFGEGMAVVNDTIHQLTWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLHFWDPVTHKTVRKIQVKHKGRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIYPQIVRDNELTSIDAVLNGIAYDPREDVLYITGKLWPRLYKVRLFLTRH 789
            MLELDVEPLRSWQKGFDTSRYTSPSLQYEVIEVYRHDAWAFTQGLDWSNGFLYEGTGSCGKSKSEASRLPTMSRVLLRRQLPDKYFGEGMAVVNDTIHQLTWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLHFWDPVTHKTVRKIQVKHKGRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIYPQIVRDNELTSIDAVLNGIAYDPREDVLYITGKLWPRLYKVRLFLTRH
Sbjct:    1 MLELDVEPLRSWQKGFDTSRYTSPSLQYEVIEVYRHDAWAFTQGLDWSNGFLYEGTGSCGKSKSEASRLPTMSRVLLRRQLPDKYFGEGMAVVNDTIHQLTWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLHFWDPVTHKTVRKIQVKHKGRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIYPQIVRDNELTSIDAVLNGIAYDPREDVLYITGKLWPRLYKVRLFLTRH 263          
BLAST of jgi.p|Trimin1|160607 vs. uniprot
Match: A0A835Z6R5_9STRA (Glutamine cyclotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R5_9STRA)

HSP 1 Score: 300 bits (767), Expect = 1.250e-98
Identity = 141/234 (60.26%), Postives = 175/234 (74.79%), Query Frame = 1
Query:   73 SLQYEVIEVYRHDAWAFTQGLDWSNGFLYEGTGSCGKSKSEASRLPTMSRVLLRRQLPDKYFGEGMAVVNDTIHQLTWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLHFWDPVTHKTVRKIQVKHKGRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIYPQIVRDNELTSIDAVLNGIAYDPREDVLYITGKLWPRLYKVRL 774
            + QYEV++VY HDA AFTQGL W  G LYE TG  G+S+     L T   VL R+QLP   FGEGM +    +HQ+TWHH +G+ WNATTLEP  SF F+T+ GEGWG+T +G HLI SDGSS LHFWDPVT+KT RK+ V  +G+PV  L+ELE+  G VLAN+W +D I  IDP +G V+ +LDF+++YP+  R +ELTS +AVLNGIAYD +EDVLY+TGKLWPRLYKVRL
Sbjct:   77 AAQYEVLKVYDHDASAFTQGLGWYQGKLYESTGMQGQSEVRIIDLET-GEVLKRQQLPSYVFGEGMVIHEGIVHQITWHHKQGYAWNATTLEPTHSFQFETTNGEGWGITSDGTHLIASDGSSNLHFWDPVTYKTTRKVPVTLRGQPVARLNELEYVKGRVLANVWFSDEILAIDPLSGRVVEVLDFAALYPRAQRAHELTSHEAVLNGIAYDAQEDVLYLTGKLWPRLYKVRL 309          
BLAST of jgi.p|Trimin1|160607 vs. uniprot
Match: D8LLP6_ECTSI (Glutamine cyclotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP6_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.050e-79
Identity = 124/234 (52.99%), Postives = 162/234 (69.23%), Query Frame = 1
Query:   79 QYEVIEVYRHDAWAFTQGLDWSNGFLYEGTGSCGKSKSEASRLPTMS-RVLLRRQLPDKYFGEGMAVVNDTIHQLTWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLHFWDPVTHKTVRKIQVKHK-GRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIYPQIVRDNELTSIDAVLNGIAYDPREDVLYITGKLWPRLYKVRL 774
            ++ ++  Y HD  AFTQGL ++ GFLYE TG  G  KS   ++ T + +VL   +L DKYFGEGM + +D IH LTW    GF W+  T EP   F F T TG+GWG+T +G+ LIVSDGS  L FWDP T K  R+++VK K GRP+  L+ELE   G+V AN+W  D + +IDP TGEV+   +FS +YP+ ++  ELTS +AVLNGIA+DP EDVLY+TGKLWPR+YKV+L
Sbjct:  181 RFSLLAEYPHDQHAFTQGLCYNGGFLYESTGLYG-GKSTVRKVDTETGKVLQSVKLDDKYFGEGMVITDDKIHSLTWRSKVGFSWDLETFEPQEQFHFNTMTGQGWGITTDGESLIVSDGSEFLFFWDPATMKETRRVEVKLKDGRPLKKLNELEVVKGYVFANVWFDDNLYKIDPATGEVVDAYNFSELYPKALQKKELTSREAVLNGIAWDPEEDVLYLTGKLWPRMYKVKL 413          
BLAST of jgi.p|Trimin1|160607 vs. uniprot
Match: A0A399Z2V9_9CHLR (Glutamine cyclotransferase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A399Z2V9_9CHLR)

HSP 1 Score: 224 bits (570), Expect = 9.320e-69
Identity = 111/233 (47.64%), Postives = 152/233 (65.24%), Query Frame = 1
Query:   70 PSLQYEVIEVYRHDAWAFTQGLDWSNGFLYEGTGSCGKSKSEASRLPTMSRVLLRRQLPDKYFGEGMAVVNDTIHQLTWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLHFWDPVTHKTVRKIQVKHKGRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIYPQIVRDNELTSIDAVLNGIAYDPREDVLYITGKLWPRLYKV 768
            P   YEV+  Y HD  AFTQGL + +G LYEGTG  G+S      L +   VL  R L  +YFGEG+ ++ND I+QLTW    GF+++  T EP  +F++ T   EGWG+T +GQ LIVSDG+ST++FWDP T + + +I V+    PV+ L+ELE+  G + ANIWLTDLIARI P TGEV+  +D + +    +  + LT    VLNGIAYDP    +++TGKLWP L+++
Sbjct:   86 PIDSYEVVNTYPHDPAAFTQGLVYHDGSLYEGTGRWGESSLREVALES-GTVLRSRSLEPQYFGEGITLLNDRIYQLTWQEQTGFVYDRATFEPQQTFNYPT---EGWGITHDGQRLIVSDGTSTIYFWDPATLQEIGRITVRDHEGPVNRLNELEYIDGEIWANIWLTDLIARISPETGEVLGYIDMTGL----LDTSSLTEPADVLNGIAYDPETGRIFVTGKLWPSLFEI 310          
BLAST of jgi.p|Trimin1|160607 vs. uniprot
Match: A0A357CTQ6_9FIRM (Glutamine cyclotransferase n=2 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A357CTQ6_9FIRM)

HSP 1 Score: 220 bits (560), Expect = 5.970e-68
Identity = 120/245 (48.98%), Postives = 160/245 (65.31%), Query Frame = 1
Query:   55 SRYTSPS----LQYEVIEVYRHDAWAFTQGLDWSNGFLYEGTGSCGKSKSEASRLPTMSRVLLRRQLPDKYFGEGMAVVNDTIHQLTWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLHFWDPVTHKTVRKIQVKHKGRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIY-PQIVRDNELTSIDAVLNGIAYDPREDVLYITGKLWPRLYKVRL 774
            S + SPS      Y +++ Y HD  AFTQGL + +GF YEGTG  G S S     PT   VL   +LP+ YFGEG++  ND I QLTW  + GF+++ATT   L +F + T   EGWGLT++G HLI+SDGS+TL F DP T   V+K++VK   RPV +L+ELEF  G + AN+WLTD IA IDP+TG+V   LD S +  P   R +   ++D VLNGIAYD  ED L++TGKLWP ++++ +
Sbjct:   25 SSHLSPSPPVNYSYRIVQSYPHDPQAFTQGLVYKDGFFYEGTGLHGCS-SLRQVDPTDGTVLKITKLPEAYFGEGISFCNDRIIQLTWREHMGFVYDATTFSLLETFTYDT---EGWGLTYDGTHLIMSDGSATLTFLDPETFAPVKKLEVKSGKRPVSHLNELEFIKGKLFANVWLTDQIAIIDPNTGQVTAWLDLSGLLDPSTHRGH---TVD-VLNGIAYDELEDRLFVTGKLWPTVFEIEI 261          
BLAST of jgi.p|Trimin1|160607 vs. uniprot
Match: A0A841I2N2_9DEIO (Glutamine cyclotransferase n=1 Tax=Deinobacterium chartae TaxID=521158 RepID=A0A841I2N2_9DEIO)

HSP 1 Score: 219 bits (558), Expect = 1.440e-67
Identity = 114/241 (47.30%), Postives = 156/241 (64.73%), Query Frame = 1
Query:   70 PSLQYEVIEVYRHDAWAFTQGLDWSNGFLYEGTGSCGKSKSEASRLPTMSRVLLRRQLPDKYFGEGMAVVNDTIHQLTWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLHFWDPVTHKTVRKIQVKHKGRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIYPQIVRDNELTSI------DAVLNGIAYDPREDVLYITGKLWPRLYKVRL 774
            P   Y +++ Y HD  AFTQGL +  G+L+EGTG  G+S+     L +  +VL +R LP   FGEG+A V++ + QL+W + RGF+W+A T  PL  F   T   EGWGLT +G+ LI+SDGS TL+F DP T+K   +++V+  G+PVD L+ELE+  G V AN+W TD IARIDP +G V   +D S +  Q      L+S+      +AVLNGIAYDP+   L++TGKLWPRLY + L
Sbjct:   31 PVYGYRIVKSYPHDPKAFTQGLLYDAGYLFEGTGQYGQSQLRRVELRS-GKVLQKRDLPADVFGEGLAKVSNRLIQLSWTNRRGFVWDAKTFAPLHEFTHDT---EGWGLTSDGRRLILSDGSDTLYFLDPQTYKVTGRVRVRDGGKPVDQLNELEYIDGEVWANVWQTDRIARIDPASGRVTAWVDLSGLR-QTALAGVLSSMSFDEFNNAVLNGIAYDPQGKRLFVTGKLWPRLYHIEL 266          
BLAST of jgi.p|Trimin1|160607 vs. uniprot
Match: A0A2H5WXG2_9BACT (Uncharacterized protein n=1 Tax=bacterium HR15 TaxID=2035410 RepID=A0A2H5WXG2_9BACT)

HSP 1 Score: 219 bits (559), Expect = 1.470e-67
Identity = 111/235 (47.23%), Postives = 153/235 (65.11%), Query Frame = 1
Query:   70 PSLQYEVIEVYRHDAWAFTQGLDWSNGFLYEGTGSCGKSKSEASRLPTMSRVLLRRQLPDKYFGEGMAVVNDTIHQLTWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLHFWDPVTHKTVRKIQVKHKGRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIYPQIVRDNELTSIDAVLNGIAYDPREDVLYITGKLWPRLYKVRL 774
            P   Y ++  Y HD  AFTQGL + NG+LYEGTG  G+S      L T  RVL  ++L  + FGEG+ +  + I+QLTWH+   F++   +   +  F +   TGEGWGLT +G+HLI+SDGS TL F DP T   V+++QVK  G PV NL+ELE+  G + AN+W TD+IARI P TGEV+  +D S +    + + E  + D VLNGIAYDP+E  L++TGKLWP+L+++ L
Sbjct:   46 PMYTYRIVNTYPHDPKAFTQGLVYYNGYLYEGTGLEGQSSLRKVELRT-GRVLQIKKLAPELFGEGITLWQNKIYQLTWHNGICFVYERDSFRSITEFSY---TGEGWGLTHDGKHLIMSDGSDTLTFRDPDTFAVVKRLQVKADGAPVRNLNELEYVEGEIYANVWQTDMIARISPTTGEVVGWIDLSGL----LSEREARNAD-VLNGIAYDPKEKRLFVTGKLWPKLFEIEL 271          
BLAST of jgi.p|Trimin1|160607 vs. uniprot
Match: A0A2R7S4N5_9BURK (Glutamine cyclotransferase n=1 Tax=Pelomonas sp. HMWF004 TaxID=2056841 RepID=A0A2R7S4N5_9BURK)

HSP 1 Score: 218 bits (555), Expect = 3.190e-67
Identity = 114/240 (47.50%), Postives = 151/240 (62.92%), Query Frame = 1
Query:   67 SPSLQYEVIEVYRHDAWAFTQGLDWSNGFLYEGTGSCGKSKSEASRLPTMSRVLLRRQLPDKYFGEGMAVVNDTIHQLTWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLHFWDPVTHKTVRKIQVKHKGRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIYPQIVRDNELTSIDAVLNGIAYDPREDVLYITGKLWPRLYKVRLFLTR 786
            +P   Y+VI  Y HD  AFTQGL + +GFLYEGTG  G+S      L T  RVL    LP + FGEG+    D I  LTW H   F+ +  T +    F++   TGEGWGLT N + L++SDG++ L F DP++ K +R+++V   GRPVD L+ELE+  G V AN+W TD IARIDP TG V+  +D + + P    DN+  + DAVLNGIAYD  +  L+ITGKLWPRL+++ L   R
Sbjct:   30 TPVQGYKVINSYPHDTQAFTQGLFFHDGFLYEGTGLQGRSSIRKLDLTT-GRVLQEAALPAEVFGEGITRWGDRIIALTWQHQTAFVLDLKTFKLWRKFNY---TGEGWGLTHNDKELVMSDGTAELRFLDPLSFKELRRVRVTADGRPVDQLNELEWVEGQVWANVWQTDRIARIDPKTGRVVGWIDLAGLLP----DNQRVNADAVLNGIAYDATKKRLFITGKLWPRLFEIELTKAR 261          
BLAST of jgi.p|Trimin1|160607 vs. uniprot
Match: A0A7J2YVT9_9ARCH (Glutaminyl-peptide cyclotransferase n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7J2YVT9_9ARCH)

HSP 1 Score: 219 bits (559), Expect = 3.240e-67
Identity = 112/239 (46.86%), Postives = 156/239 (65.27%), Query Frame = 1
Query:   67 SPSLQYEVIEVYRHDAWAFTQGLDWSNGFLYEGTGSCGKSKSEASRLPTMSRVLLRRQLPDKYFGEGMAVVNDTIHQLTWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLHFWDPVTHKTVRKIQVKHKGRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIYPQIVRDNELTSIDAVLNGIAYDPREDVLYITGKLWPRLYKVRLFLT 783
            +P   Y+V+ +Y HD  AFT+GL +  G LYE TG  G S      L T   VL + QLP +YFGEG+ VVN  + QLTW ++ GF+++  T   LG+F + T   EGWGLT+NG  L++SDGSSTL+F DP T++TV ++ VK    P+ NL+ELE+ +G + AN+W T  IA I+P TG+V   LD +SIY    + +  +S DAVLNGIAYD +   L++TGK WP LY++++  T
Sbjct:   76 APIYTYQVVNIYPHDTSAFTEGLIFDKGALYESTGGLGASYLRRVDLQT-GNVLQQYQLPSEYFGEGLTVVNGRLIQLTWLNHIGFVYDEDTFALLGNFTYTT---EGWGLTYNGSDLVMSDGSSTLYFLDPTTYQTVGQVTVKDGNTPITNLNELEYVNGDIYANVWHTQKIAIINPQTGQVKGWLDLTSIY----QPDLSSSPDAVLNGIAYDQQTGHLFVTGKDWPNLYEIKVNAT 306          
BLAST of jgi.p|Trimin1|160607 vs. uniprot
Match: A0A7V0UFE5_9BACT (Glutaminyl-peptide cyclotransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V0UFE5_9BACT)

HSP 1 Score: 218 bits (555), Expect = 3.400e-67
Identity = 111/236 (47.03%), Postives = 152/236 (64.41%), Query Frame = 1
Query:   67 SPSLQYEVIEVYRHDAWAFTQGLDWSNGFLYEGTGSCGKSKSEASRLPTMSRVLLRRQLPDKYFGEGMAVVNDTIHQLTWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLHFWDPVTHKTVRKIQVKHKGRPVDNLDELEFAHGHVLANIWLTDLIARIDPHTGEVMHMLDFSSIYPQIVRDNELTSIDAVLNGIAYDPREDVLYITGKLWPRLYKVRL 774
            +P   Y ++  Y HD  AFTQGL + +GFLYE TG  G+S      L +  +VL   +LP +YFGEG+     ++ QLTW HN GF+++ TT +  GSF +    GEGWGL  +G  LI+SDGSS L F DP + K   ++ V+ +GRPVDNL+ELE+  G + AN+W TD IARI P TGEV   +D S    +++  +E  S D VLNGIAYD   D L++TGKLWP+L+++R+
Sbjct:   33 APVHTYRIVRTYPHDRNAFTQGLFYLDGFLYESTGLEGRSSVRKVELAS-GKVLQEYRLPSQYFGEGLTHWKSSLLQLTWKHNAGFVYDLTTFKLTGSFSY---AGEGWGLAHDGVRLIMSDGSSALRFLDPDSRKETGRMTVRDRGRPVDNLNELEYVRGEIYANVWQTDRIARISPKTGEVTGWVDLS----RLLSASEAASAD-VLNGIAYDSSGDRLFVTGKLWPKLFEIRI 259          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160607 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8N0_9STRA6.070e-202100.00Glutamine cyclotransferase n=1 Tax=Tribonema minus... [more]
A0A835Z6R5_9STRA1.250e-9860.26Glutamine cyclotransferase n=1 Tax=Tribonema minus... [more]
D8LLP6_ECTSI1.050e-7952.99Glutamine cyclotransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A399Z2V9_9CHLR9.320e-6947.64Glutamine cyclotransferase n=1 Tax=Anaerolineae ba... [more]
A0A357CTQ6_9FIRM5.970e-6848.98Glutamine cyclotransferase n=2 Tax=Firmicutes bact... [more]
A0A841I2N2_9DEIO1.440e-6747.30Glutamine cyclotransferase n=1 Tax=Deinobacterium ... [more]
A0A2H5WXG2_9BACT1.470e-6747.23Uncharacterized protein n=1 Tax=bacterium HR15 Tax... [more]
A0A2R7S4N5_9BURK3.190e-6747.50Glutamine cyclotransferase n=1 Tax=Pelomonas sp. H... [more]
A0A7J2YVT9_9ARCH3.240e-6746.86Glutaminyl-peptide cyclotransferase n=1 Tax=Candid... [more]
A0A7V0UFE5_9BACT3.400e-6747.03Glutaminyl-peptide cyclotransferase n=1 Tax=Acidob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:1392183..1394158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160607|e_gw1.14.120.1
DescriptionGlutamine cyclotransferase
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG3823@1|root,2QUQC@2759|Eukaryota
Evalue1.72e-80
Seed ortholog2880.D8LLP6
Hectar predicted targeting categoryother localisation
TranscriptId160929
TrackFilteredModels1
ProteinId160607
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160607gene_3288Tribonema minus UTEX_B_3156 geneContig_14 1392183..1394158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160607Trimin1|160607|e_gw1.14.120.1Tribonema minus UTEX_B_3156 polypeptideContig_14 1392183..1394158 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3288_4exon_3288_4Tribonema minus UTEX_B_3156 exonContig_14 1392183..1392501 -
exon_3288_3exon_3288_3Tribonema minus UTEX_B_3156 exonContig_14 1393135..1393289 -
exon_3288_2exon_3288_2Tribonema minus UTEX_B_3156 exonContig_14 1393637..1393737 -
exon_3288_1exon_3288_1Tribonema minus UTEX_B_3156 exonContig_14 1393942..1394158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3288CDS_3288Tribonema minus UTEX_B_3156 CDSContig_14 1393942..1394158 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3288 ID=mRNA_3288|Name=jgi.p|Trimin1|160607|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=792bp|location=Sequence derived from alignment at Contig_14:1392183..1394158- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGAGTTGGACGTGGAACCATTAAGGTCCTGGCAGAAAGGCTTTGA
TACGAGCAGATATACCAGCCCGTCGTTGCAATACGAGGTCATCGAGGTCT
ACAGACATGACGCCTGGGCCTTCACGCAAGGGCTCGACTGGAGCAATGGT
TTTCTGTACGAGGGCACCGGTTCTTGCGGCAAAAGCAAAAGCGAGGCAAG
TCGTCTGCCCACAATGAGCAGGGTACTGCTGCGGCGGCAACTGCCAGACA
AGTACTTTGGGGAGGGGATGGCGGTGGTGAACGACACCATACATCAACTC
ACGTGGCACCACAACCGGGGCTTCATCTGGAATGCAACAACACTGGAGCC
CCTGGGATCATTCGATTTCAAAACATCGACCGGGGAGGGGTGGGGCTTGA
CCTGGAATGGACAGCACTTGATAGTCAGCGACGGAAGCAGCACGCTGCAC
TTCTGGGATCCAGTCACTCATAAGACGGTGCGAAAAATTCAGGTCAAGCA
CAAGGGGCGCCCCGTTGACAATCTGGACGAACTTGAATTTGCCCACGGTC
ACGTCCTGGCCAACATATGGCTCACGGACCTCATTGCGCGCATTGACCCC
CACACGGGGGAGGTTATGCACATGCTCGACTTCTCCAGCATCTACCCGCA
GATCGTGCGCGACAACGAGCTCACCAGCATCGACGCAGTGCTCAACGGCA
TTGCCTACGACCCGCGTGAAGACGTGCTGTACATTACCGGGAAGCTGTGG
CCGCGGCTGTACAAAGTGCGCCTGTTTTTGACGCGTCACTGA
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protein sequence of jgi.p|Trimin1|160607

>Trimin1|160607|e_gw1.14.120.1 ID=Trimin1|160607|e_gw1.14.120.1|Name=jgi.p|Trimin1|160607|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=264bp
MLELDVEPLRSWQKGFDTSRYTSPSLQYEVIEVYRHDAWAFTQGLDWSNG
FLYEGTGSCGKSKSEASRLPTMSRVLLRRQLPDKYFGEGMAVVNDTIHQL
TWHHNRGFIWNATTLEPLGSFDFKTSTGEGWGLTWNGQHLIVSDGSSTLH
FWDPVTHKTVRKIQVKHKGRPVDNLDELEFAHGHVLANIWLTDLIARIDP
HTGEVMHMLDFSSIYPQIVRDNELTSIDAVLNGIAYDPREDVLYITGKLW
PRLYKVRLFLTRH*
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mRNA from alignment at Contig_14:1392183..1394158-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3288 ID=mRNA_3288|Name=jgi.p|Trimin1|160607|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1976bp|location=Sequence derived from alignment at Contig_14:1392183..1394158- (Tribonema minus UTEX_B_3156 )
ATGCTGGAGTTGGACGTGGAACCATTAAGGTCCTGGCAGAAAGGCTTTGA TACGAGCAGATATACCAGCCCGTCGTTGCAATACGAGGTCATCGAGGTCT ACAGACATGACGCCTGGGCCTTCACGCAAGGGCTCGACTGGAGCAATGGT TTTCTGTACGAGGGCACCGGTTCTTGCGGCAAAAGCAAAAGCGAGGCAAG TCGTCTGCCCACAATGAGTATACCAAAGATGATGTGCCTTGCTAATGTCC AGTGTTGCTGCCCTGCTGGAAGTGAACACAAACCTGACATCCTGCCACGG CTGTTGCAATCGCATACCTGTATCTCAAGCCTTGCTGCACCTGAAGCTCT CCTGGACGCCCCAGCTCTATTGCCGCTGTTGAACTTCTGCATGCAGATAC GCAAGGTTGAGCTGGAATCAGGCAGGGTACTGCTGCGGCGGCAACTGCCA GACAAGTACTTTGGGGAGGGGATGGCGGTGGTGAACGACACCATACATCA ACTCACGTGGCACCACAACCGGGTGAGCTACAAGCGAACCTGATTGCGCT CATTGTGCCTTACAGCCTGACTTCCCAGTAACAAGTTTCATTCTTGGCAA CAAAGGAGATTCGCAAGCCTTGCAAAGAAACCACAAGGGTTAGGCTGTCA AGAATGGGGTGGTTGCTCGCATGAAGCGCCAGGTCGCTGTAACGGCTCAT GTAGCTCCCTTCACGTTGCACACTTTTCGCGCAAGTGTGGCCGACTTGGC AAAAATACCAGGGTAACATGCCAGTTTGTGCCGCTGTTTGCAAGTATGGT GCGGATGCTGAAGCATCTCTTGTATGCTGTGCTTCCCTTTCCTGTGACAC CTTTCCTCATGCTGTGCAGGGCTTCATCTGGAATGCAACAACACTGGAGC CCCTGGGATCATTCGATTTCAAAACATCGACCGGGGAGGGGTGGGGCTTG ACCTGGAATGGACAGCACTTGATAGTCAGCGACGGAAGCAGCACGCTGCA CTTCTGGGATCCAGTCACTCATAAGTATGCACAATTCTCTAAACTGCTGA GCAGTGCGCAGTGTGTGCCGTGCCACTCCGATCTTCGCGAGTGACTTGCC ACATTTCGAGTAAACTTCATACTACATAGCAGCAGTGCACTCAATGTCTC AGATTGTGGCCGAGCGTGTGTGGCAAGGCAGGACCCTTTCGCGCGCCTTT ACAGTTGTCATAGGCGCCTGTATTATAGGTGCCTCATTGTATGACGTGAT GTCAGACGCAGTGTATAGGTTTTGCCTTTAGGTATCTGCCCAAAATACAT CGGTACTGTTCATCTCAAGTACTGTGCAGGCGTCGGAAGCGACAGAAGTG AAATATGCATTTTGGTCCTGCGCGAACTTGGTGACAGCTGCTGGTGACAA CAAGCGTAATGTTCCTGTCCACCACGTTCCATACACTGCTCAATTGATCA GCTTGCGTTACTCATGCAGACTTGCCCAGGCCTGTTTGACAAGCGCTTGA CTGTACAGGCAGCTGATGTAGCCCTACACGCAACACTTGTTCCCACTGAC ACGCCATGCATTCTGCATGTGCGGGATCATGCCGTACGATGTATACGTTT GTGTGCCTTCCTTCAAGCCCTTATACATCGTTTTCACCTGCCATCCCTCT TCACCAGGACGGTGCGAAAAATTCAGGTCAAGCACAAGGGGCGCCCCGTT GACAATCTGGACGAACTTGAATTTGCCCACGGTCACGTCCTGGCCAACAT ATGGCTCACGGACCTCATTGCGCGCATTGACCCCCACACGGGGGAGGTTA TGCACATGCTCGACTTCTCCAGCATCTACCCGCAGATCGTGCGCGACAAC GAGCTCACCAGCATCGACGCAGTGCTCAACGGCATTGCCTACGACCCGCG TGAAGACGTGCTGTACATTACCGGGAAGCTGTGGCCGCGGCTGTACAAAG TGCGCCTGTTTTTGACGCGTCACTGA
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Coding sequence (CDS) from alignment at Contig_14:1392183..1394158-

>mRNA_3288 ID=mRNA_3288|Name=jgi.p|Trimin1|160607|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=792bp|location=Sequence derived from alignment at Contig_14:1392183..1394158- (Tribonema minus UTEX_B_3156 )
ATGCTGGAGTTGGACGTGGAACCATTAAGGTCCTGGCAGAAAGGCTTTGA
TACGAGCAGATATACCAGCCCGTCGTTGCAATACGAGGTCATCGAGGTCT
ACAGACATGACGCCTGGGCCTTCACGCAAGGGCTCGACTGGAGCAATGGT
TTTCTGTACGAGGGCACCGGTTCTTGCGGCAAAAGCAAAAGCGAGGCAAG
TCGTCTGCCCACAATGAGCAGGGTACTGCTGCGGCGGCAACTGCCAGACA
AGTACTTTGGGGAGGGGATGGCGGTGGTGAACGACACCATACATCAACTC
ACGTGGCACCACAACCGGGGCTTCATCTGGAATGCAACAACACTGGAGCC
CCTGGGATCATTCGATTTCAAAACATCGACCGGGGAGGGGTGGGGCTTGA
CCTGGAATGGACAGCACTTGATAGTCAGCGACGGAAGCAGCACGCTGCAC
TTCTGGGATCCAGTCACTCATAAGACGGTGCGAAAAATTCAGGTCAAGCA
CAAGGGGCGCCCCGTTGACAATCTGGACGAACTTGAATTTGCCCACGGTC
ACGTCCTGGCCAACATATGGCTCACGGACCTCATTGCGCGCATTGACCCC
CACACGGGGGAGGTTATGCACATGCTCGACTTCTCCAGCATCTACCCGCA
GATCGTGCGCGACAACGAGCTCACCAGCATCGACGCAGTGCTCAACGGCA
TTGCCTACGACCCGCGTGAAGACGTGCTGTACATTACCGGGAAGCTGTGG
CCGCGGCTGTACAAAGTGCGCCTGTTTTTGACGCGTCACTGA
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