mRNA_3242 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160684
Unique NamemRNA_3242
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A835Z9L0_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L0_9STRA)

HSP 1 Score: 352 bits (904), Expect = 4.260e-123
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1
Query:    1 MYVVAFVLTTAPARILKNSCWRTDDIPVPCSQHIINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIKVRRALVWTCCFKCLCRRCH 516
            MYVVAFVLTTAPARILKNSCWRTDDIPVPCSQHIINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIKVRRALVWTCCFKCLCRRCH
Sbjct:    1 MYVVAFVLTTAPARILKNSCWRTDDIPVPCSQHIINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIKVRRALVWTCCFKCLCRRCH 172          
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A835ZE77_9STRA (Protein-tyrosine phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE77_9STRA)

HSP 1 Score: 143 bits (361), Expect = 7.420e-41
Identity = 77/122 (63.11%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   97 HIINCTADI-ADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIK 459
            HIINCT  + AD    DFT+ RV +ED P  NI  AF PACA+I  AR+AGGATLVHCRKG+SRSATI LA+ V HE MT L+ALR L++ RP +SPNAGFMAQLL+LE  + G TT+D+ K
Sbjct:   22 HIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 143          
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A835ZD16_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD16_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.650e-24
Identity = 62/131 (47.33%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   97 HIINCTADIADNASPDFTWRRVP----------LEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIK 459
            HIINCT     N  PD + + VP          L+D   ++I  A AP+  +I  AR  GG  LVHC  GMSRSATI +A+ V H  MTLL+A+   + +R   SPN GF++QLLDLEH VH C T+DL K
Sbjct:   95 HIINCTRHCP-NLFPDHSGQPVPTEGFHYLKLSLQDSIDQDITSALAPSFRMIEEARACGGCCLVHCSSGMSRSATITIAYLVQHRNMTLLDAMHLTKDRRRQTSPNPGFVSQLLDLEHVVHACHTLDLGK 224          
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A1V9Z4X6_9STRA (Dual specificity protein phosphatase 2-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4X6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.860e-22
Identity = 62/142 (43.66%), Postives = 81/142 (57.04%), Query Frame = 1
Query:   52 NSCWRTDDIPVPCSQ---HIINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIKVRR 468
            N C   +D+P   S    HI+NCT +  D       + RV + D P   I   F  AC+ I  A +   A LVHC  GMSRSATI LA+ +SH  M LLEAL  LRA+R  VSPN GFM +L++LE  VH   ++DL + ++
Sbjct:   44 NDC--VNDLPALLSMGVTHIVNCTRETPDYFPEHVEYLRVAVTDEPEVAIDAFFDEACSFINKAVDNKRACLVHCSHGMSRSATIVLAYLISHRGMQLLEALDYLRARRRVVSPNVGFMQRLVELEIKVHHAASLDLQEYKK 183          
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: I0YQM9_COCSC (Phosphatases II n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQM9_COCSC)

HSP 1 Score: 97.8 bits (242), Expect = 5.140e-22
Identity = 59/125 (47.20%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   97 HIINCTADIADNASPDFTWR--RVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIKVR 465
            H++N T D+     PD  +R  R  + D   E+I R F  A A I AARE+GGA LVHC +G SRS T+ LA+ +  +  TL +AL  + A RP VSPNAGFMA+L+ LE  +HG  TV L K +
Sbjct:   57 HVLNATDDLL-LPDPDAAFRSLRCAVRDMEEEDIGRFFDSAAAFIDAARESGGAALVHCHEGKSRSVTLVLAYFMQAKEWTLKQALDFVSAARPQVSPNAGFMARLIRLEESLHGTKTVKLKKTK 180          
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A067CZI3_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CZI3_SAPPC)

HSP 1 Score: 95.1 bits (235), Expect = 3.200e-21
Identity = 55/119 (46.22%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   97 HIINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDL 453
            H++NCT +  +       + RVP+ D P   I   F  ACA I  A E   A +VHC  GMSRSATI LA+ V   +M LL+AL+ LR+ R  VSPN GFM +LL+LE  VH   ++DL
Sbjct:   61 HVVNCTRETPNYFPDRVEYLRVPITDEPEMEIDMYFDDACAFIHKAVENHMACMVHCSHGMSRSATIVLAYLVKIRKMRLLDALQYLRSLRRVVSPNIGFMQRLLELEMAVHDANSLDL 179          
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A1V9YRT3_9STRA (Carbohydrate-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YRT3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.320e-19
Identity = 53/124 (42.74%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   97 HIINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIKVRR 468
            HI+NCT +  +  +  F + ++P+ D P  NI   F   C  I  A E   A +VHC  GMSRSATI LA+ + ++ MTLL+AL  LR+ R  VSPN GFM QLL LE  ++   ++DL + ++
Sbjct:   64 HIVNCTRETPNYFTEHFEYLQIPINDDPDVNIDMYFEEICTFIHKAIENKMACMVHCSHGMSRSATIVLAYLMQYKEMTLLQALTYLRSLRRVVSPNIGFMQQLLTLELSIYQVNSLDLQEYKK 187          
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: UPI000F4FC8F6 (dual specificity protein phosphatase 18 n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI000F4FC8F6)

HSP 1 Score: 89.4 bits (220), Expect = 3.560e-19
Identity = 49/119 (41.18%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  100 IINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLI 456
            IIN T D+ D       + RV + D PA N+ + F      I A R   G  LVHC  G+SRSAT+ LA+ V +  M+L++A   +RA RP + PN+GF  QL+D EH +HG ++V ++
Sbjct:   44 IINATQDMEDICLRSIEYIRVAISDSPASNLHKHFDTVADKIDAVRAQCGRVLVHCCAGVSRSATLCLAYLVKYRDMSLMDAHTLVRACRPIIRPNSGFWKQLIDYEHSLHGTSSVMMV 162          
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A3N0YDU5_ANAGA (Dual specificity protein phosphatase 18 n=2 Tax=Xenocypridinae TaxID=2743747 RepID=A0A3N0YDU5_ANAGA)

HSP 1 Score: 88.6 bits (218), Expect = 6.270e-19
Identity = 52/119 (43.70%), Postives = 67/119 (56.30%), Query Frame = 1
Query:  100 IINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLI 456
            IIN T DI  N  P   +  V + D P   +   F      I    E  G  LVHC  G+SRSAT+ LA+ + H RMTL+EA   L+AQRP V PN+GF +QL++ E  +HG  TV +I
Sbjct:   40 IINATQDITSNI-PAVDYMHVSVSDDPESRLTDHFDTVADKIHQVTEEHGRVLVHCNAGVSRSATLCLAYLMKHRRMTLVEAHALLKAQRPIVRPNSGFWSQLIEYERKLHGKNTVTMI 157          
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A2P8YY79_BLAGE (Uncharacterized protein n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8YY79_BLAGE)

HSP 1 Score: 89.7 bits (221), Expect = 6.790e-19
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   64 RTDDIPVPCSQHIINCTADIADNASP---DFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLI 456
            R  D+ V C   ++N  A++ D   P   +  + +V +ED    ++         +I   ++AGG TLVHC  G+SRSA++ LA+ + HERM L +A   LR++RPS+ PN GF  QL++ E  + G  TV+++
Sbjct:   65 RLRDLGVTC---VVNAAAELPDTPLPQEKEIAYLKVSVEDKSNSDLLSHMDAVADMIEEVQQAGGKTLVHCVAGVSRSASLCLAYLIKHERMPLKKAFAHLRSRRPSIRPNTGFFTQLIEFERRLLGAATVNMV 195          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9L0_9STRA4.260e-123100.00Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A835ZE77_9STRA7.420e-4163.11Protein-tyrosine phosphatase-like protein (Fragmen... [more]
A0A835ZD16_9STRA3.650e-2447.33Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A1V9Z4X6_9STRA2.860e-2243.66Dual specificity protein phosphatase 2-like n=1 Ta... [more]
I0YQM9_COCSC5.140e-2247.20Phosphatases II n=1 Tax=Coccomyxa subellipsoidea (... [more]
A0A067CZI3_SAPPC3.200e-2146.22Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A1V9YRT3_9STRA1.320e-1942.74Carbohydrate-binding protein n=1 Tax=Thraustotheca... [more]
UPI000F4FC8F63.560e-1941.18dual specificity protein phosphatase 18 n=1 Tax=Ta... [more]
A0A3N0YDU5_ANAGA6.270e-1943.70Dual specificity protein phosphatase 18 n=2 Tax=Xe... [more]
A0A2P8YY79_BLAGE6.790e-1935.82Uncharacterized protein n=1 Tax=Blattella germanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:1043908..1044426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160684|e_gw1.14.19.1
BRITEko00000,ko00001,ko01000,ko01009
KEGG Pathwayko04010,map04010
KEGG koko:K04459,ko:K14165
EC3.1.3.16,3.1.3.48
Descriptionprotein tyrosine/serine/threonine phosphatase activity
COG categoryT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2453@1|root,KOG1718@2759|Eukaryota
Evalue7.23e-23
Seed ortholog157072.XP_008877060.1
Hectar predicted targeting categoryother localisation
TranscriptId161006
TrackFilteredModels1
ProteinId160684
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160684gene_3242Tribonema minus UTEX_B_3156 geneContig_14 1043908..1044426 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3242_1exon_3242_1Tribonema minus UTEX_B_3156 exonContig_14 1043908..1044426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3242CDS_3242Tribonema minus UTEX_B_3156 CDSContig_14 1043908..1044426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160684Trimin1|160684|e_gw1.14.19.1Tribonema minus UTEX_B_3156 polypeptideContig_14 1043908..1044426 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3242 ID=mRNA_3242|Name=jgi.p|Trimin1|160684|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_14:1043908..1044426+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGTAGTTGCCTTTGTGTTAACTACCGCCCCTGCACGCATCCTCAA
GAACTCCTGCTGGAGAACTGACGATATTCCTGTACCTTGCTCGCAGCACA
TCATCAACTGCACCGCGGACATCGCGGACAACGCCAGCCCTGACTTCACG
TGGCGCAGGGTGCCACTTGAGGACCATCCCGCAGAAAACATCTTCCGCGC
TTTCGCGCCTGCCTGCGCCATCATCGCCGCAGCCAGGGAGGCTGGCGGGG
CGACCCTGGTGCACTGCAGGAAAGGCATGAGCCGCTCAGCGACTATAGCG
CTCGCATTCTGTGTGAGTCATGAGCGCATGACGCTGCTGGAGGCACTGCG
GCGCCTGCGAGCGCAGCGCCCCTCGGTCAGCCCTAACGCCGGCTTCATGG
CGCAGCTACTGGACCTTGAGCATGGAGTTCACGGCTGCACCACGGTGGAT
CTCATCAAGGTGCGACGGGCGCTAGTTTGGACATGCTGTTTCAAATGTTT
GTGCCGGCGATGTCATTAG
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protein sequence of jgi.p|Trimin1|160684

>Trimin1|160684|e_gw1.14.19.1 ID=Trimin1|160684|e_gw1.14.19.1|Name=jgi.p|Trimin1|160684|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=173bp
MYVVAFVLTTAPARILKNSCWRTDDIPVPCSQHIINCTADIADNASPDFT
WRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIA
LAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVD
LIKVRRALVWTCCFKCLCRRCH*
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mRNA from alignment at Contig_14:1043908..1044426+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3242 ID=mRNA_3242|Name=jgi.p|Trimin1|160684|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_14:1043908..1044426+ (Tribonema minus UTEX_B_3156 )
ATGTATGTAGTTGCCTTTGTGTTAACTACCGCCCCTGCACGCATCCTCAA GAACTCCTGCTGGAGAACTGACGATATTCCTGTACCTTGCTCGCAGCACA TCATCAACTGCACCGCGGACATCGCGGACAACGCCAGCCCTGACTTCACG TGGCGCAGGGTGCCACTTGAGGACCATCCCGCAGAAAACATCTTCCGCGC TTTCGCGCCTGCCTGCGCCATCATCGCCGCAGCCAGGGAGGCTGGCGGGG CGACCCTGGTGCACTGCAGGAAAGGCATGAGCCGCTCAGCGACTATAGCG CTCGCATTCTGTGTGAGTCATGAGCGCATGACGCTGCTGGAGGCACTGCG GCGCCTGCGAGCGCAGCGCCCCTCGGTCAGCCCTAACGCCGGCTTCATGG CGCAGCTACTGGACCTTGAGCATGGAGTTCACGGCTGCACCACGGTGGAT CTCATCAAGGTGCGACGGGCGCTAGTTTGGACATGCTGTTTCAAATGTTT GTGCCGGCGATGTCATTAG
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Coding sequence (CDS) from alignment at Contig_14:1043908..1044426+

>mRNA_3242 ID=mRNA_3242|Name=jgi.p|Trimin1|160684|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=519bp|location=Sequence derived from alignment at Contig_14:1043908..1044426+ (Tribonema minus UTEX_B_3156 )
ATGTATGTAGTTGCCTTTGTGTTAACTACCGCCCCTGCACGCATCCTCAA
GAACTCCTGCTGGAGAACTGACGATATTCCTGTACCTTGCTCGCAGCACA
TCATCAACTGCACCGCGGACATCGCGGACAACGCCAGCCCTGACTTCACG
TGGCGCAGGGTGCCACTTGAGGACCATCCCGCAGAAAACATCTTCCGCGC
TTTCGCGCCTGCCTGCGCCATCATCGCCGCAGCCAGGGAGGCTGGCGGGG
CGACCCTGGTGCACTGCAGGAAAGGCATGAGCCGCTCAGCGACTATAGCG
CTCGCATTCTGTGTGAGTCATGAGCGCATGACGCTGCTGGAGGCACTGCG
GCGCCTGCGAGCGCAGCGCCCCTCGGTCAGCCCTAACGCCGGCTTCATGG
CGCAGCTACTGGACCTTGAGCATGGAGTTCACGGCTGCACCACGGTGGAT
CTCATCAAGGTGCGACGGGCGCTAGTTTGGACATGCTGTTTCAAATGTTT
GTGCCGGCGATGTCATTAG
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