mRNA_3242 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A835Z9L0_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L0_9STRA) HSP 1 Score: 352 bits (904), Expect = 4.260e-123 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1
Query: 1 MYVVAFVLTTAPARILKNSCWRTDDIPVPCSQHIINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIKVRRALVWTCCFKCLCRRCH 516
MYVVAFVLTTAPARILKNSCWRTDDIPVPCSQHIINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIKVRRALVWTCCFKCLCRRCH
Sbjct: 1 MYVVAFVLTTAPARILKNSCWRTDDIPVPCSQHIINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIKVRRALVWTCCFKCLCRRCH 172
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A835ZE77_9STRA (Protein-tyrosine phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE77_9STRA) HSP 1 Score: 143 bits (361), Expect = 7.420e-41 Identity = 77/122 (63.11%), Postives = 92/122 (75.41%), Query Frame = 1
Query: 97 HIINCTADI-ADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIK 459
HIINCT + AD DFT+ RV +ED P NI AF PACA+I AR+AGGATLVHCRKG+SRSATI LA+ V HE MT L+ALR L++ RP +SPNAGFMAQLL+LE + G TT+D+ K
Sbjct: 22 HIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 143
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A835ZD16_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD16_9STRA) HSP 1 Score: 105 bits (261), Expect = 3.650e-24 Identity = 62/131 (47.33%), Postives = 78/131 (59.54%), Query Frame = 1
Query: 97 HIINCTADIADNASPDFTWRRVP----------LEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIK 459
HIINCT N PD + + VP L+D ++I A AP+ +I AR GG LVHC GMSRSATI +A+ V H MTLL+A+ + +R SPN GF++QLLDLEH VH C T+DL K
Sbjct: 95 HIINCTRHCP-NLFPDHSGQPVPTEGFHYLKLSLQDSIDQDITSALAPSFRMIEEARACGGCCLVHCSSGMSRSATITIAYLVQHRNMTLLDAMHLTKDRRRQTSPNPGFVSQLLDLEHVVHACHTLDLGK 224
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A1V9Z4X6_9STRA (Dual specificity protein phosphatase 2-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4X6_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 2.860e-22 Identity = 62/142 (43.66%), Postives = 81/142 (57.04%), Query Frame = 1
Query: 52 NSCWRTDDIPVPCSQ---HIINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIKVRR 468
N C +D+P S HI+NCT + D + RV + D P I F AC+ I A + A LVHC GMSRSATI LA+ +SH M LLEAL LRA+R VSPN GFM +L++LE VH ++DL + ++
Sbjct: 44 NDC--VNDLPALLSMGVTHIVNCTRETPDYFPEHVEYLRVAVTDEPEVAIDAFFDEACSFINKAVDNKRACLVHCSHGMSRSATIVLAYLISHRGMQLLEALDYLRARRRVVSPNVGFMQRLVELEIKVHHAASLDLQEYKK 183
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: I0YQM9_COCSC (Phosphatases II n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQM9_COCSC) HSP 1 Score: 97.8 bits (242), Expect = 5.140e-22 Identity = 59/125 (47.20%), Postives = 77/125 (61.60%), Query Frame = 1
Query: 97 HIINCTADIADNASPDFTWR--RVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIKVR 465
H++N T D+ PD +R R + D E+I R F A A I AARE+GGA LVHC +G SRS T+ LA+ + + TL +AL + A RP VSPNAGFMA+L+ LE +HG TV L K +
Sbjct: 57 HVLNATDDLL-LPDPDAAFRSLRCAVRDMEEEDIGRFFDSAAAFIDAARESGGAALVHCHEGKSRSVTLVLAYFMQAKEWTLKQALDFVSAARPQVSPNAGFMARLIRLEESLHGTKTVKLKKTK 180
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A067CZI3_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CZI3_SAPPC) HSP 1 Score: 95.1 bits (235), Expect = 3.200e-21 Identity = 55/119 (46.22%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 97 HIINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDL 453
H++NCT + + + RVP+ D P I F ACA I A E A +VHC GMSRSATI LA+ V +M LL+AL+ LR+ R VSPN GFM +LL+LE VH ++DL
Sbjct: 61 HVVNCTRETPNYFPDRVEYLRVPITDEPEMEIDMYFDDACAFIHKAVENHMACMVHCSHGMSRSATIVLAYLVKIRKMRLLDALQYLRSLRRVVSPNIGFMQRLLELEMAVHDANSLDL 179
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A1V9YRT3_9STRA (Carbohydrate-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YRT3_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 1.320e-19 Identity = 53/124 (42.74%), Postives = 75/124 (60.48%), Query Frame = 1
Query: 97 HIINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIKVRR 468
HI+NCT + + + F + ++P+ D P NI F C I A E A +VHC GMSRSATI LA+ + ++ MTLL+AL LR+ R VSPN GFM QLL LE ++ ++DL + ++
Sbjct: 64 HIVNCTRETPNYFTEHFEYLQIPINDDPDVNIDMYFEEICTFIHKAIENKMACMVHCSHGMSRSATIVLAYLMQYKEMTLLQALTYLRSLRRVVSPNIGFMQQLLTLELSIYQVNSLDLQEYKK 187
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: UPI000F4FC8F6 (dual specificity protein phosphatase 18 n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI000F4FC8F6) HSP 1 Score: 89.4 bits (220), Expect = 3.560e-19 Identity = 49/119 (41.18%), Postives = 70/119 (58.82%), Query Frame = 1
Query: 100 IINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLI 456
IIN T D+ D + RV + D PA N+ + F I A R G LVHC G+SRSAT+ LA+ V + M+L++A +RA RP + PN+GF QL+D EH +HG ++V ++
Sbjct: 44 IINATQDMEDICLRSIEYIRVAISDSPASNLHKHFDTVADKIDAVRAQCGRVLVHCCAGVSRSATLCLAYLVKYRDMSLMDAHTLVRACRPIIRPNSGFWKQLIDYEHSLHGTSSVMMV 162
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A3N0YDU5_ANAGA (Dual specificity protein phosphatase 18 n=2 Tax=Xenocypridinae TaxID=2743747 RepID=A0A3N0YDU5_ANAGA) HSP 1 Score: 88.6 bits (218), Expect = 6.270e-19 Identity = 52/119 (43.70%), Postives = 67/119 (56.30%), Query Frame = 1
Query: 100 IINCTADIADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLI 456
IIN T DI N P + V + D P + F I E G LVHC G+SRSAT+ LA+ + H RMTL+EA L+AQRP V PN+GF +QL++ E +HG TV +I
Sbjct: 40 IINATQDITSNI-PAVDYMHVSVSDDPESRLTDHFDTVADKIHQVTEEHGRVLVHCNAGVSRSATLCLAYLMKHRRMTLVEAHALLKAQRPIVRPNSGFWSQLIEYERKLHGKNTVTMI 157
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Match: A0A2P8YY79_BLAGE (Uncharacterized protein n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8YY79_BLAGE) HSP 1 Score: 89.7 bits (221), Expect = 6.790e-19 Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 1
Query: 64 RTDDIPVPCSQHIINCTADIADNASP---DFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLI 456
R D+ V C ++N A++ D P + + +V +ED ++ +I ++AGG TLVHC G+SRSA++ LA+ + HERM L +A LR++RPS+ PN GF QL++ E + G TV+++
Sbjct: 65 RLRDLGVTC---VVNAAAELPDTPLPQEKEIAYLKVSVEDKSNSDLLSHMDAVADMIEEVQQAGGKTLVHCVAGVSRSASLCLAYLIKHERMPLKKAFAHLRSRRPSIRPNTGFFTQLIEFERRLLGAATVNMV 195 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160684 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3242 ID=mRNA_3242|Name=jgi.p|Trimin1|160684|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_14:1043908..1044426+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTATGTAGTTGCCTTTGTGTTAACTACCGCCCCTGCACGCATCCTCAAback to top protein sequence of jgi.p|Trimin1|160684 >Trimin1|160684|e_gw1.14.19.1 ID=Trimin1|160684|e_gw1.14.19.1|Name=jgi.p|Trimin1|160684|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=173bp MYVVAFVLTTAPARILKNSCWRTDDIPVPCSQHIINCTADIADNASPDFTback to top mRNA from alignment at Contig_14:1043908..1044426+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3242 ID=mRNA_3242|Name=jgi.p|Trimin1|160684|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_14:1043908..1044426+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_14:1043908..1044426+ >mRNA_3242 ID=mRNA_3242|Name=jgi.p|Trimin1|160684|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=519bp|location=Sequence derived from alignment at Contig_14:1043908..1044426+ (Tribonema minus UTEX_B_3156 )back to top |