mRNA_3241 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A835ZE77_9STRA (Protein-tyrosine phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE77_9STRA) HSP 1 Score: 286 bits (731), Expect = 1.110e-97 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 Query: 1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 429 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK Sbjct: 1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 143
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A835Z9L0_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L0_9STRA) HSP 1 Score: 146 bits (368), Expect = 5.180e-42 Identity = 77/122 (63.11%), Postives = 92/122 (75.41%), Query Frame = 1 Query: 64 HIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 429 HIINCT + AD DFT+ RV +ED P NI AF PACA+I AR+AGGATLVHCRKG+SRSATI LA+ V HE MT L+ALR L++ RP +SPNAGFMAQLL+LE + G TT+D+ K Sbjct: 33 HIINCTADI-ADNASPDFTWRRVPLEDHPAENIFRAFAPACAIIAAAREAGGATLVHCRKGMSRSATIALAFCVSHERMTLLEALRRLRAQRPSVSPNAGFMAQLLDLEHGVHGCTTVDLIK 153
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A1V9Z4X6_9STRA (Dual specificity protein phosphatase 2-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4X6_9STRA) HSP 1 Score: 124 bits (310), Expect = 6.750e-33 Identity = 69/143 (48.25%), Postives = 90/143 (62.94%), Query Frame = 1 Query: 1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 429 LF+GG DC D L S G+THI+NCTR D +LRVAV D P V I F+ AC+ I A D A LVHC G+SRSATIVLA+L+ H GM L+AL YL++ R ++SPN GFM +L+ELE + ++D+ + Sbjct: 39 LFIGGNDCVNDLPALLSMGVTHIVNCTRET-PDYFPEHVEYLRVAVTDEPEVAIDAFFDEACSFINKAVDNKRACLVHCSHGMSRSATIVLAYLISHRGMQLLEALDYLRARRRVVSPNVGFMQRLVELEIKVHHAASLDLQE 180
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A067CZI3_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CZI3_SAPPC) HSP 1 Score: 112 bits (281), Expect = 1.590e-28 Identity = 64/141 (45.39%), Postives = 88/141 (62.41%), Query Frame = 1 Query: 1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDM 423 L++GG DC D L + I+H++NCTR + +LRV + D P + I F+ ACA I A + A +VHC G+SRSATIVLA+LVK M LDAL+YL+S R ++SPN GFM +LLELE A+ ++D+ Sbjct: 40 LYIGGNDCVNDLDVLGTMDISHVVNCTRET-PNYFPDRVEYLRVPITDEPEMEIDMYFDDACAFIHKAVENHMACMVHCSHGMSRSATIVLAYLVKIRKMRLLDALQYLRSLRRVVSPNIGFMQRLLELEMAVHDANSLDL 179
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: UPI001403A6D0 (dual specificity protein phosphatase 14 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403A6D0) HSP 1 Score: 110 bits (275), Expect = 7.160e-28 Identity = 58/139 (41.73%), Postives = 87/139 (62.59%), Query Frame = 1 Query: 1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTI 417 L+L C+ + S LR+RGIT ++N + V ADARL ++RV V DCP IS F+P I GG TLVHC G+SRSA++ +A+L++ EG+ DA R++++ RP + PN+GF QL+ E+ L G+ ++ Sbjct: 14 LYLSNGRCASNASLLRARGITCVVNASLEV-ADARLPGVRYVRVPVPDCPHAPISRYFDPVAERIAGEARRGGRTLVHCAAGVSRSASLCIAYLMRGEGLVLRDAFRWVRARRPAVCPNSGFWRQLIRYERELFGRCSV 151
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A1V9YRT3_9STRA (Carbohydrate-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YRT3_9STRA) HSP 1 Score: 114 bits (286), Expect = 5.100e-27 Identity = 63/143 (44.06%), Postives = 90/143 (62.94%), Query Frame = 1 Query: 1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 429 L++GG DC D L++ ITHI+NCTR + F +L++ + D P VNI FE C I A + A +VHC G+SRSATIVLA+L++++ MT L AL YL+S R ++SPN GFM QLL LE ++ ++D+ + Sbjct: 43 LYIGGNDCVNDLLVLQTMDITHIVNCTRET-PNYFTEHFEYLQIPINDDPDVNIDMYFEEICTFIHKAIENKMACMVHCSHGMSRSATIVLAYLMQYKEMTLLQALTYLRSLRRVVSPNIGFMQQLLTLELSIYQVNSLDLQE 184
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: I0YQM9_COCSC (Phosphatases II n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQM9_COCSC) HSP 1 Score: 109 bits (272), Expect = 6.570e-27 Identity = 60/143 (41.96%), Postives = 87/143 (60.84%), Query Frame = 1 Query: 1 LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 429 L++GGA + LR G+TH++N T + A F LR AV D +I F+ A A I AR++GGA LVHC +G SRS T+VLA+ ++ + T AL ++ + RP +SPNAGFMA+L+ LE++L G T+ + K Sbjct: 36 LWVGGAVEANSLHLLRHLGVTHVLNATDDLLLPDPDAAFRSLRCAVRDMEEEDIGRFFDSAAAFIDAARESGGAALVHCHEGKSRSVTLVLAYFMQAKEWTLKQALDFVSAARPQVSPNAGFMARLIRLEESLHGTKTVKLKK 178
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: S4S1S4_PETMA (Protein-tyrosine-phosphatase n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4S1S4_PETMA) HSP 1 Score: 107 bits (266), Expect = 1.940e-26 Identity = 56/132 (42.42%), Postives = 84/132 (63.64%), Query Frame = 1 Query: 22 CSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTI 417 C+ + S LR+RGIT ++N + V ADARL ++RV V DCP IS F+P I GG TLVHC G+SRSA++ +A+L++ EG+ DA R++++ RP + PN+GF QL+ E+ L G+ ++ Sbjct: 31 CASNASLLRARGITCVVNASLEV-ADARLPGVRYVRVPVPDCPHAPISRYFDPVAERIAGEARRGGRTLVHCAAGVSRSASLCIAYLMRGEGLVLRDAFRWVRARRPAVCPNSGFWRQLIRYERELFGRCSV 161
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A0A9YIJ5_LYGHE (Dual specificity protein phosphatase 10 n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YIJ5_LYGHE) HSP 1 Score: 106 bits (265), Expect = 7.290e-26 Identity = 57/135 (42.22%), Postives = 85/135 (62.96%), Query Frame = 1 Query: 1 LFLGGADCSLDYSELRSRGITHIINCT-RGVCADARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALR 402 L++G A + D LR RG++H++N T A A + T+ ++ D NI + FE A + I AR G+ LVHC+ G+SRS TI +A+++KH G+T ++A + +++ RP+ISPN FM QLLELEQ LR Sbjct: 70 LYVGNARDARDADVLRGRGVSHVLNVTLTPTPAPADPSGVTYRQLPASDSTQQNIKQYFEEAFSFIEEARKNNGSVLVHCQAGVSRSPTIAIAYIMKHRGVTMVEAYKTVKTARPIISPNLNFMGQLLELEQHLR 204
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Match: A0A835ZD16_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD16_9STRA) HSP 1 Score: 108 bits (269), Expect = 8.960e-26 Identity = 61/152 (40.13%), Postives = 89/152 (58.55%), Query Frame = 1 Query: 1 LFLGGADCSLDYSELRSRGITHIINCTRGVCAD---------ARLADFTFLRVAVEDCPTVNISEAFEPACALIGTARDAGGATLVHCRKGISRSATIVLAWLVKHEGMTALDALRYLQSCRPLISPNAGFMAQLLELEQALRGQTTIDMDK 429 L + G D +LD +++ GITHIINCTR C + F +L+++++D +I+ A P+ +I AR GG LVHC G+SRSATI +A+LV+H MT LDA+ + R SPN GF++QLL+LE + T+D+ K Sbjct: 74 LAIAGEDITLDKDAMKAMGITHIINCTRH-CPNLFPDHSGQPVPTEGFHYLKLSLQDSIDQDITSALAPSFRMIEEARACGGCCLVHCSSGMSRSATITIAYLVQHRNMTLLDAMHLTKDRRRQTSPNPGFVSQLLDLEHVVHACHTLDLGK 224 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131542 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3241 ID=mRNA_3241|Name=jgi.p|Trimin1|131542|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=429bp|location=Sequence derived from alignment at Contig_14:1040395..1040995+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCTTTCTGGGGGGCGCCGACTGCTCCCTGGATTACTCTGAGCTTCGAAGback to top protein sequence of jgi.p|Trimin1|131542 >Trimin1|131542|gw1.14.16.1 ID=Trimin1|131542|gw1.14.16.1|Name=jgi.p|Trimin1|131542|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=143bp LFLGGADCSLDYSELRSRGITHIINCTRGVCADARLADFTFLRVAVEDCPback to top mRNA from alignment at Contig_14:1040395..1040995+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3241 ID=mRNA_3241|Name=jgi.p|Trimin1|131542|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=601bp|location=Sequence derived from alignment at Contig_14:1040395..1040995+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_14:1040395..1040995+ >mRNA_3241 ID=mRNA_3241|Name=jgi.p|Trimin1|131542|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=429bp|location=Sequence derived from alignment at Contig_14:1040395..1040995+ (Tribonema minus UTEX_B_3156 )back to top |