mRNA_3234 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347660
Unique Name	mRNA_3234
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|347660 vs. uniprot
Match: A0A835ZAZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ0_9STRA)

HSP 1 Score: 436 bits (1121), Expect = 9.690e-153
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1

Query:    1 MEYAVMRMGKLKKKSQMLRVMQEKFYILTIQGQLLVHSSAGFKTVTTAPPLLFADAAVMTRDEPWVPYHAMKLVTQLTANTAAVAFAGYLQLQPLHGVNTSGHGWYMTPNGRMGLFEKISSSNVWTVQGMHEYDELLLLDHASRTQNQVQTLPPAAGKAGVPLAPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDVLAEDEGGEEEGDMRSLVSPRPPGVGGAAPFQAATLQQQQRPXXXXXSPRQEGRKALGGVELLIAGY 828
            MEYAVMRMGKLKKKSQMLRVMQEKFYILTIQGQLLVHSSAGFKTVTTAPPLLFADAAVMTRDEPWVPYHAMKLVTQLTANTAAVAFAGYLQLQPLHGVNTSGHGWYMTPNGRMGLFEKISSSNVWTVQGMHEYDELLLLDHASRTQNQVQTLPPAAGKAGVPLAPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDVLAEDEGGEEEGDMRSLVSPRPPGVGGAAPFQAATLQQQQRPXXXXXSPRQEGRKALGGVELLIAGY
Sbjct:    1 MEYAVMRMGKLKKKSQMLRVMQEKFYILTIQGQLLVHSSAGFKTVTTAPPLLFADAAVMTRDEPWVPYHAMKLVTQLTANTAAVAFAGYLQLQPLHGVNTSGHGWYMTPNGRMGLFEKISSSNVWTVQGMHEYDELLLLDHASRTQNQVQTLPPAAGKAGVPLAPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDVLAEDEGGEEEGDMRSLVSPRPPGVGGAAPFQAATLQQQQRPXXXXXSPRQEGRKALGGVELLIAGY 276

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347660 vs. uniprot

BLAST of jgi.p|Trimin1|347660 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZAZ0_9STRA	9.690e-153	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_14	contig	Contig_14:970947..976568 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347660\|estExt_Genemark1.C_Ctg_140103
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Pleckstrin homology-like domain
Ec32 ortholog	Ec-19_003600.1
TranscriptId	347982
Track	FilteredModels1
ProteinId	347660

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347660	gene_3234	Tribonema minus UTEX_B_3156	gene	Contig_14 970947..976568 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347660	Trimin1\|347660\|estExt_Genemark1.C_Ctg_140103	Tribonema minus UTEX_B_3156	polypeptide	Contig_14 970947..976568 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3234_1	exon_3234_1	Tribonema minus UTEX_B_3156	exon	Contig_14 970947..971039 +
exon_3234_2	exon_3234_2	Tribonema minus UTEX_B_3156	exon	Contig_14 971780..971932 +
exon_3234_3	exon_3234_3	Tribonema minus UTEX_B_3156	exon	Contig_14 973777..973881 +
exon_3234_4	exon_3234_4	Tribonema minus UTEX_B_3156	exon	Contig_14 975106..975204 +
exon_3234_5	exon_3234_5	Tribonema minus UTEX_B_3156	exon	Contig_14 976188..976568 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3234	CDS_3234	Tribonema minus UTEX_B_3156	CDS	Contig_14 970947..971039 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_14:970947..976568+
coding sequence from alignment at Contig_14:970947..976568+

spliced messenger RNA

>mRNA_3234 ID=mRNA_3234|Name=jgi.p|Trimin1|347660|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=831bp|location=Sequence derived from alignment at Contig_14:970947..976568+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTACGCCGTGATGCGAATGGGGAAGCTAAAGAAAAAGAGTCAGAT
GCTGAGGGTTATGCAGGAAAAGTTCTACATTCTCACGATACAGGGGCAAC
TACTGGTGCACTCCTCAGCAGGCTTCAAGACCGTTACAACGGCGCCGCCG
CTGCTCTTTGCCGACGCGGCGGTGATGACGAGGGACGAGCCGTGGGTGCC
ATATCACGCCATGAAGCTGGTGACGCAGCTGACGGCGAACACGGCCGCAG
TGGCGTTTGCTGGGTACCTGCAGCTGCAGCCGCTGCATGGCGTCAACACT
TCAGGACACGGCTGGTACATGACGCCTAATGGGCGCATGGGCCTGTTTGA
GAAGATTTCCAGCAGCAACGTCTGGACGGTACAGGGCATGCACGAGTACG
ACGAATTGCTGCTGCTGGACCACGCCAGCCGGACACAGAACCAGGTGCAG
ACCCTGCCGCCTGCGGCCGGCAAGGCGGGGGTGCCGCTCGCGCCGTCCCC
CACCGCCACATCAGCAACTGCGTCCACGCCCACCCAATCAAACGCAGCAG
CCACACCGCTCAGCGCCAGCGCGCGCAGCGCAGCGCGGCGCTCGCCCGCA
GCTGCCGCGGCTGCAGCGCAGATTGACGTCTTGGCGGAGGATGAAGGGGG
GGAGGAGGAGGGGGACATGCGGTCGCTGGTGTCCCCGCGCCCCCCCGGCG
TGGGGGGGGCGGCGCCGTTCCAGGCGGCGACGCTGCAACAGCAGCAGCGG
CCGCAGCAGCAGCAGCAGTCGCCACGGCAGGAAGGCCGGAAGGCACTCGG
CGGAGTGGAGCTGTTGATAGCGGGGTACTAG

protein sequence of jgi.p|Trimin1|347660

>Trimin1|347660|estExt_Genemark1.C_Ctg_140103 ID=Trimin1|347660|estExt_Genemark1.C_Ctg_140103|Name=jgi.p|Trimin1|347660|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=277bp
MEYAVMRMGKLKKKSQMLRVMQEKFYILTIQGQLLVHSSAGFKTVTTAPP
LLFADAAVMTRDEPWVPYHAMKLVTQLTANTAAVAFAGYLQLQPLHGVNT
SGHGWYMTPNGRMGLFEKISSSNVWTVQGMHEYDELLLLDHASRTQNQVQ
TLPPAAGKAGVPLAPSPTATSATASTPTQSNAAATPLSASARSAARRSPA
AAAAAAQIDVLAEDEGGEEEGDMRSLVSPRPPGVGGAAPFQAATLQQQQR
PQQQQQSPRQEGRKALGGVELLIAGY*

mRNA from alignment at Contig_14:970947..976568+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3234 ID=mRNA_3234|Name=jgi.p|Trimin1|347660|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5622bp|location=Sequence derived from alignment at Contig_14:970947..976568+ (Tribonema minus UTEX_B_3156 )
ATGGAGTACGCCGTGATGCGAATGGGGAAGCTAAAGAAAAAGAGTCAGAT
GCTGAGGGTTATGCAGGAAAAGTTCTACATTCTCACGATACAGGTGGGCG
GATGCCTCTCGCACAGATCTTTCCTGTTCGTCAGCTTCAGCAGATGCGCT
CAACTGCTGTTTTACACGGCACGTTGCGTGAGGTACATTAGTTGGTACGC
AGGTGCTACAGGTGCAGGCGAACTCCGTTGTTTAAAATGGTTTAATCCCA
TATGCACTTGGAAGGAGGGTATTTCGAGCATGCGGGGAAGCCTTCAAGGC
ACTTGACAACATGTGATTGAAAACCGCTGCAGGCGATCTGGCCCCTGAAC
AAGGCTGCGAACTTCGAGTGCGGCCCTCAAGTTGAAGTTGCGCTGGGGCA
GTAAAGTGACTTTGGGTCGATAATGTTGCGCACATGTTCACATGCGATTG
ACAGCAGCGGGTTTCCAGTTATGGCAGCGTATGTCACAAGAATACACACA
TCACTGGAGAGAATGTCTCATTGGCAACGTTGCGTAACTGCGCCCAGCGT
CTTGTTGCGTTGACAACATCGGCGTCAGTGCAACGTCACCTGCTAGCGCA
CTGCTTCAAGTCCAATACTTAATCTGCGCACCATTCGGCAAGTCACCGCG
TGAACGACGATAGCACATGCTGTTGACACTTCCGGCGTGACCATGACATA
ACGCTGCCCCGCGCAGGGGCAACCACTGGTGCACTCCTCCACGGGCTTCA
AGACCGTTACAACGACAGTTACACATGCCCCTTGGCGTTCTCTCACGCAT
CTGGTGCAAACTCGATACCGGTGCCCCGCACAGGGGCAACTACTGGTGCA
CTCCTCAGCAGGCTTCAAGACCGTTACAACGGCGCCGCCGCTGCTCTTTG
CCGACGCGGCGGTGATGACGAGGGACGAGCCGTGGGTGCCATATCACGCC
ATGAAGCTGGTGACGCAGCTGACGGCGAACACGGCCGTAGACAGGCAAGT
CGTTCTTGAAGTCGCAGCGCAAAGGGGCTCTTGTGGCAAACACGGCCGTT
GAAAGGCAAGTCGCTCTTGAAGTTGCAACGCTGGGGCTCTTGTGGCAAAC
ACGGCTGTTGAGGCAAGCCGGAGATCTTGAAGTTGCGGTGTAGGGGCACT
GTGGTGCCTGCACTATGAAGGGTAAACTGTGAGCTTCTATTGAGGCACGC
ACTTCAACTGACGCTTCAACTCACAATCTGGCACTGGTGGCGCAGCCAGC
AATGCAGATGATGCGCTTACCAACCCTAACCCTCAGTCAGCGTCTGCAAT
CGTGTCTGAGAGCACGACACGTGCGCAAGTGCCTGTAAGGGGGTTCAACG
TACATGTAGGCAGGGTAGGCCTATAGGTGTATGGTCTGCTGACCAATCTG
AACTTCTGCCGCATCATGCCGACAAGCTAAGCGTTGAACTGCTATTGAAG
CACCAACAGGCAAGTCAGTGCTAGGCGCCAATGCCAAGGCCTCGCAAATG
TCGATCTGTTGTGTAGCACACTAGTGTGCATCGTTTACAATTACTTATCA
CAGTACATGATCACGTGAAGTACGTTTTCAGTAATTACGTGGCAGGGCAG
ACGCCATGTAGTGTATTGTAGATGAGCCCGATGAAAGGCGAAGGCGCCAC
CGGCTGCTCGTCATCACCATGCATGCCATGTATTGAAGCAATCGATGGCG
CACAAAAATGCGGCACACCTCATCACTACCTCATTGAAAGGTCTGTTTTG
CTTCGTCTTCCTGCTTGCGACGCTTACTGTGCTTTGAACAGTCACCAAAC
AAGTGTTGCCTTTTGCTAATGACACCTCTACTGCTGCTTGTCCCACTGCA
GCGTGGACTACAATGGAAGCTGCAAGCTGCTTATTAATGTGGGAGGCCGC
GCGAGCTTGGAGCTGGAGGCTCCAAGTGCGGAAGAGGGGCACGCTTGGGC
CAGAGCACTGGAGGAAACAGTACAAATCATGCAGGTGAATGGAGAATGAA
CAGTACAAATCATGCAGGTGAATGGGAGAATGCCTCATTGCACACAAGTA
CGCGGCGCACCTCGATGATGCTCAGACCGAAGCACTGGCATCCCGCGAGT
GATTGCAACCGGACCTCAATCATAATCACTTGAAGAGGTGTTATTGGCAG
CACTCACTCAGGCATTCATGTGAAAAATATGGATGTACTTCAATAAGTAG
GTACATCAAAGCATGCGGTGTTGCTGCCATCTGTCTGATATCCTGAATTA
TTGTTCCGTGAATGGCAAGGTCAGCTTGGTATGACACGGCCTGCATGCTG
GCGGTCATCCCGCTCCACACTAAAGGACAGTCCTGAAAGTCCGCATCAGG
TTGTTTGCAACGTGTTTTGCACACTGCTGCGCCAACTTCACGAATCTCTG
GCCACAGGCATGACAGAAAACTGCCATGACTCTCTCAAAGTCACCCACCT
GGTGTTGTTGCAGCTTACATCTCCTACATCTTTGACTGGGTATTCTGCGC
TTTGCGCATTGCCTGATGCTCATGCCAACCCCCAACACTACCCCAACACC
AGCAAGCAGGCGCACATGCTCCAATGTCCCTGTCTTCATATACGTGCTTG
TTAGTGCAGGTGCAGTGCGGCCGAGCGGTGATGATCAACCACCACCATGC
CTCGAGGGCCACTTACTGCGCTGTTGCCTCATGTGCTTGCCAAGCCCTAC
GACTGACCACCAGTAGTGCTCAGGTTTTAATGCCAACAATGCCATAACAA
TGTAGGTTCATCGCCATCGATGCCACTTGTGTTTTAAATTGGAGTTGTCG
CATTCGTCTGCTGGTCATTCGCTGGCGCAGGCAGTGGCGTTTGCTGGGTA
CCTGCAGCTGCAGCCGCTGCATGGCGTCAACACTTCAGGACACGGCTGGT
ACATGACGCCTAATGGGCGCATGGGCCTGTTTGAGGTATGTACTGTGTAC
TTTTTATTAATTCTCGCTCAGGGCGCGAAAAAGCCCAGATGATTGGCATC
TAGCTGTAAGGAATCTACATGTCGTATGACAGTCTGAAAGTGTCGCAACG
ACAACCACTCAAACGCCGCCGCCGCCAAATGGCATCTCGGGGTCCTCCCC
TACGTCCTCCTCCATGTGCCCCCCCCCCCTGGATTCTGCCATGTGTGTCA
TGACACGGCCAGAGTACGCCATGTGGAGCGCTGCCGACAGTGCCGAGCGT
GTACTTGTGTACTCTACTGTTGGCAATGACATCTGACACGGTCGAGCATC
GATCATGTCGCGACCGCACATTGACTCCTATCGTAGCAGTCGTACCGTTG
ATGGCCTGGGCTTTAGCACGTCCTGATCAAGAATGAGTGAGCTGTACTGT
GAAGGCAGCTCCAGCCGCTGCATGGCGTCAACACTTCAGGGCATGGCTGG
TACATGACGCCCAATGGGCGCATGGGCCTGTTTGAGGCATGTGCTTTACT
GTCGGCAATGGCATCTTGGCATGGTTGAGCGTCGCATCATGTCGTGACGG
CACATGTACTCTACTGTTGGCAATGGCATTTGGCATGGTTAGCATCGCAG
CGCGTCGCAACGGCACGTTGACTCCTGTTGCAGCAGGTGTACCGTTGGTG
GTCTGGGCTTTGGCTCACGCTGATCGAGGACAAGTGAACTGTTAATGTGA
AGGCCGCAGTGTGCTGCGGCACTTGATGATGTGCTCATTGGCGGTGGCTG
TAACACAGATAGTCAGGGCTGGGCTTACGGGCAGCAACAGGACCCTCTTA
TGTCTGGGCTGCCAAGTAGGCGCTGGCGTATATGATATTTGTTGCAGGGC
CCGGCATCATTGAAGTTACTGATAGACAAGCAATCATCAACATTTCCTGT
GGCCTGTCAACCTCAAAGGTTTGTGTGCATTGCTCACTCTTAGTCAAGGT
GGTGACTCTGAATCTGACCTCAAGTCAGGTGCTGGTGTGCAAAGCTGCCA
CACAGTTCAAGTTGGCATGAATTTGCGCCCTGTGCATAATCTGCACTCAA
ATGGTACCTATGCATTTTTTTCAGGGCTCGAGCCTGACGGCGTTGATCTG
CTACTGCGCAGCAAGCGATCGTTTTCTTGCTTCTTTCGCGCTTGCGTAGC
GATCGCAGCCTGCCGCTGTGAACCAAGCCGCGTCTGTCTCGCTTCTGCTG
CGCCTGCAGAAGATTTCCAGCAGCAACGTCTGGACGGTACAGGGCATGCA
CGAGTACGACGAATTGCTGCTGCTGGACCACGCCAGCCGGACACAGAACC
AGGTGCAGGTATGTATGTTTGAGCGTTGTGACTTGGACCTACTTCAAGAT
ACTAGCAGTACTGTAACATTTCAAGGTACTTGAAGTACTGTCATATTGAG
CAGGGCGCAGAACCAGGTGCAGGTATCAAGAAGTAGGTTTGAGCGCTGAG
CGTTGTGATATATCAACAACCTACTTCAAGATAGCAATAGTACTTCAATA
TTGGCAGCTGGGTGCACAACCAGGTGCAGGTATGTATGTTTGAGTGCTAA
GCGTTGTGACGTTATCGACGTACTTCAAATTACTAGTAGTACTGTAAAAT
TGGCAGCTGGGGCACAACCAGGTGCAGGTATGGATGTTTGAGTTGCTGAG
CGTTGTGACATGATGGGCCTACTTCAAGATACCAGTACTTCTAGTACTGT
AATATTGGCAGATGGGTGCACAACCAGGACTGCGTTTGTACGCGGTCTTG
CTGAGCACTGTGGCACACTTGGGCTGGTCAGGCTGCGGCATCGTAGTATC
TCATGTTGGCTGTCAGTCATGCCGGGTGCCATGATCTGCTACTTCACGAT
GACTTAGAGTACAAGCCGTTCAGGTGTGCGATCCTAGGCGTCTTGTCGTC
AGCGCGTGTCCTGTATCGACGCCTAGCCTGTGCTTTTGGACACGTGACGT
GTCATGGTCTCGTGCATCAGACACCTCACATGTCTTGCACACCTGTTACG
TTTACTCTAAATACCGAAACAAAGCATACCGCTTCAGCGTCGATGCATGA
GTGCCTCAGCGCACGCTGCTCCAGCTCTGCACAAAGAGAGCCCTGCCTAT
ACCACACACACTCTCTCTCACAACAGCCAGCACTGCCCTGTGTCTCGCAC
ATCAGCCCCCGCAACTGCCAATTTCACCTGACAACAGCGCCCTTGCCAAC
ATGCCCTGCCAAGCTCTCAGCACACTTGCTGACGATGACCAGAACCTCCA
CCTACTCCCCCCCCCCCCCCCCCCCTTGTCCCCATCACAAGACCCTGCCG
CCTGCGGCCGGCAAGGCGGGGGTGCCGCTCGCGCCGTCCCCCACCGCCAC
ATCAGCAACTGCGTCCACGCCCACCCAATCAAACGCAGCAGCCACACCGC
TCAGCGCCAGCGCGCGCAGCGCAGCGCGGCGCTCGCCCGCAGCTGCCGCG
GCTGCAGCGCAGATTGACGTCTTGGCGGAGGATGAAGGGGGGGAGGAGGA
GGGGGACATGCGGTCGCTGGTGTCCCCGCGCCCCCCCGGCGTGGGGGGGG
CGGCGCCGTTCCAGGCGGCGACGCTGCAACAGCAGCAGCGGCCGCAGCAG
CAGCAGCAGTCGCCACGGCAGGAAGGCCGGAAGGCACTCGGCGGAGTGGA
GCTGTTGATAGCGGGGTACTAG

Coding sequence (CDS) from alignment at Contig_14:970947..976568+

>mRNA_3234 ID=mRNA_3234|Name=jgi.p|Trimin1|347660|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=831bp|location=Sequence derived from alignment at Contig_14:970947..976568+ (Tribonema minus UTEX_B_3156 )
ATGGAGTACGCCGTGATGCGAATGGGGAAGCTAAAGAAAAAGAGTCAGAT
GCTGAGGGTTATGCAGGAAAAGTTCTACATTCTCACGATACAGGGGCAAC
TACTGGTGCACTCCTCAGCAGGCTTCAAGACCGTTACAACGGCGCCGCCG
CTGCTCTTTGCCGACGCGGCGGTGATGACGAGGGACGAGCCGTGGGTGCC
ATATCACGCCATGAAGCTGGTGACGCAGCTGACGGCGAACACGGCCGCAG
TGGCGTTTGCTGGGTACCTGCAGCTGCAGCCGCTGCATGGCGTCAACACT
TCAGGACACGGCTGGTACATGACGCCTAATGGGCGCATGGGCCTGTTTGA
GAAGATTTCCAGCAGCAACGTCTGGACGGTACAGGGCATGCACGAGTACG
ACGAATTGCTGCTGCTGGACCACGCCAGCCGGACACAGAACCAGGTGCAG
ACCCTGCCGCCTGCGGCCGGCAAGGCGGGGGTGCCGCTCGCGCCGTCCCC
CACCGCCACATCAGCAACTGCGTCCACGCCCACCCAATCAAACGCAGCAG
CCACACCGCTCAGCGCCAGCGCGCGCAGCGCAGCGCGGCGCTCGCCCGCA
GCTGCCGCGGCTGCAGCGCAGATTGACGTCTTGGCGGAGGATGAAGGGGG
GGAGGAGGAGGGGGACATGCGGTCGCTGGTGTCCCCGCGCCCCCCCGGCG
TGGGGGGGGCGGCGCCGTTCCAGGCGGCGACGCTGCAACAGCAGCAGCGG
CCGCAGCAGCAGCAGCAGTCGCCACGGCAGGAAGGCCGGAAGGCACTCGG
CGGAGTGGAGCTGTTGATAGCGGGGTACTAG