mRNA_3213 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152883
Unique NamemRNA_3213
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|152883 vs. uniprot
Match: A0A836CLH9_9STRA (Alkaline-phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLH9_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.940e-44
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 PHIITIMLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP 198
            PHIITIMLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP
Sbjct:    1 PHIITIMLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP 66
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BLAST of jgi.p|Trimin1|152883 vs. uniprot
Match: A0A835YSD4_9STRA (Alkaline-phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.270e-37
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 PHIITIMLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP 198
            PHI+TI+LDDWGYNNWGYRAKGLAN LEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP
Sbjct:   89 PHIVTIILDDWGYNNWGYRAKGLANRLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP 154
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BLAST of jgi.p|Trimin1|152883 vs. uniprot
Match: A0A835YMD4_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD4_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.120e-36
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 PHIITIMLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP 198
            PHI+TI+LDDWGYNNWGYRAKGLAN LEVKTPNLDQLAAKGLVLDRHYTA IC+PTRAAFQTGRNP
Sbjct:   31 PHIVTIILDDWGYNNWGYRAKGLANRLEVKTPNLDQLAAKGLVLDRHYTASICTPTRAAFQTGRNP 96
[Close]
BLAST of jgi.p|Trimin1|152883 vs. uniprot
Match: A0A836CKG9_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKG9_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.120e-34
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 PHIITIMLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP 198
            PHI+ I+LDDWG+NNWGYRAKGLANSLEVKTPNLD+LAAKGLVLDRHYTA ICSP RAAFQTGR+P
Sbjct:   13 PHIVAIILDDWGFNNWGYRAKGLANSLEVKTPNLDELAAKGLVLDRHYTASICSPARAAFQTGRHP 78
[Close]
BLAST of jgi.p|Trimin1|152883 vs. uniprot
Match: A0A835ZC25_9STRA (Alkaline-phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC25_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.170e-30
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 PHIITIMLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP 198
            PHII IMLD+WGYNNWG  AK  ANS EV+TP+LD LA  G+VLDRHY AP+C+P+RAAFQTGRNP
Sbjct:   12 PHIIVIMLDEWGYNNWGVHAKDHANSREVRTPSLDALATVGIVLDRHYAAPLCTPSRAAFQTGRNP 77
[Close]
BLAST of jgi.p|Trimin1|152883 vs. uniprot
Match: A0A836CMP8_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.440e-28
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 PHIITIMLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP 198
            PHIITIM+DDWGYNNWG  AK  ANS EV+TP+LD LA  G+VLDRHY AP+C+P+RAAFQTGRNP
Sbjct:   28 PHIITIMIDDWGYNNWGVHAKDEANSREVRTPSLDALANVGIVLDRHYAAPLCTPSRAAFQTGRNP 93
[Close]
BLAST of jgi.p|Trimin1|152883 vs. uniprot
Match: A0A836CML6_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML6_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.020e-27
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:   19 MLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP 198
            MLDDWG+NNWG  A GLAN+ EV+TP LD+LAA GL+LDRHYTAP+CSPTRAAFQTGRNP
Sbjct:    1 MLDDWGWNNWGVHAHGLANNAEVRTPELDKLAAAGLILDRHYTAPLCSPTRAAFQTGRNP 60
[Close]
BLAST of jgi.p|Trimin1|152883 vs. uniprot
Match: A0A835ZDE5_9STRA (Alkaline-phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE5_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.150e-26
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 PHIITIMLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP 198
            P+I+ IMLDDWGYNNWG  AK  ANS EV+TP LD LA+ G+ LDRHYTA +CSP+RAAFQTGRNP
Sbjct:   22 PNIVAIMLDDWGYNNWGVHAKNKANSREVRTPVLDGLASVGIALDRHYTASVCSPSRAAFQTGRNP 87
[Close]
BLAST of jgi.p|Trimin1|152883 vs. uniprot
Match: A0A835YXV1_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 7.740e-26
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 PHIITIMLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP 198
            PHIITI++DDWG+NN+ Y A+  AN  EVKTPNL++LA++G+VLDRHY A IC+PTR AFQTGRNP
Sbjct:   36 PHIITILIDDWGWNNFSYHARKNANRAEVKTPNLEKLASRGVVLDRHYVACICTPTRCAFQTGRNP 101
[Close]
BLAST of jgi.p|Trimin1|152883 vs. uniprot
Match: A0A835Z5L6_9STRA (Arylsulfatase B-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5L6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.360e-24
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 PHIITIMLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTAPICSPTRAAFQTGRNP 198
            PH+ITI++DDWG+NNWGY A   A+  EV TPNLD LA+ G VLDRHY A +C+P+RAA+Q GRNP
Sbjct:   42 PHLITILVDDWGFNNWGYHANTTASKPEVSTPNLDSLASGGAVLDRHYVACVCTPSRAAYQVGRNP 107
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152883 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLH9_9STRA1.940e-44100.00Alkaline-phosphatase-like protein (Fragment) n=1 T... [more]
A0A835YSD4_9STRA1.270e-3795.45Alkaline-phosphatase-like protein n=1 Tax=Tribonem... [more]
A0A835YMD4_9STRA1.120e-3692.42Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A836CKG9_9STRA1.120e-3487.88Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A835ZC25_9STRA1.170e-3074.24Alkaline-phosphatase-like protein n=1 Tax=Tribonem... [more]
A0A836CMP8_9STRA1.440e-2875.76Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A836CML6_9STRA4.020e-2780.00Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A835ZDE5_9STRA1.150e-2672.73Alkaline-phosphatase-like protein n=1 Tax=Tribonem... [more]
A0A835YXV1_9STRA7.740e-2669.70Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]
A0A835Z5L6_9STRA1.360e-2465.15Arylsulfatase B-like protein n=1 Tax=Tribonema min... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:825544..825741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152883|gw1.14.237.1
BRITEko00000,ko00001,ko00002,ko01000
KEGG ReactionR07823
KEGG ModuleM00076,M00077
KEGG Pathwayko00531,ko01100,ko04142,map00531,map01100,map04142
KEGG koko:K01135
EC3.1.6.12
DescriptionArylsulfatase B
COG categoryP
Max annot lvl33208|Metazoa
EggNOG OGsCOG3119@1|root,KOG3867@2759|Eukaryota,38DVH@33154|Opisthokonta,3BAP3@33208|Metazoa,3CRD5@33213|Bilateria,41UDF@6656|Arthropoda,3SK1D@50557|Insecta,455S8@7147|Diptera,45CHY@7148|Nematocera
Evalue6.31e-17
Seed ortholog7176.CPIJ006775-PA
Hectar predicted targeting categoryother localisation
TranscriptId153205
TrackFilteredModels1
ProteinId152883
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152883gene_3213Tribonema minus UTEX_B_3156 geneContig_14 825544..825741 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3213_1exon_3213_1Tribonema minus UTEX_B_3156 exonContig_14 825544..825741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3213CDS_3213Tribonema minus UTEX_B_3156 CDSContig_14 825544..825741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152883Trimin1|152883|gw1.14.237.1Tribonema minus UTEX_B_3156 polypeptideContig_14 825544..825741 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3213 ID=mRNA_3213|Name=jgi.p|Trimin1|152883|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_14:825544..825741+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCGCACATCATCACCATTATGCTAGACGACTGGGGCTACAATAACTGGGG
ATACCGAGCCAAAGGGCTTGCAAACAGCTTAGAAGTGAAGACCCCCAATC
TGGACCAGCTCGCAGCAAAAGGTTTGGTGCTCGATCGTCATTATACGGCA
CCAATCTGCAGCCCCACCCGCGCTGCGTTTCAGACAGGCAGAAATCCC
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protein sequence of jgi.p|Trimin1|152883

>Trimin1|152883|gw1.14.237.1 ID=Trimin1|152883|gw1.14.237.1|Name=jgi.p|Trimin1|152883|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=66bp
PHIITIMLDDWGYNNWGYRAKGLANSLEVKTPNLDQLAAKGLVLDRHYTA
PICSPTRAAFQTGRNP
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mRNA from alignment at Contig_14:825544..825741+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3213 ID=mRNA_3213|Name=jgi.p|Trimin1|152883|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_14:825544..825741+ (Tribonema minus UTEX_B_3156 )
CCGCACATCATCACCATTATGCTAGACGACTGGGGCTACAATAACTGGGG
ATACCGAGCCAAAGGGCTTGCAAACAGCTTAGAAGTGAAGACCCCCAATC
TGGACCAGCTCGCAGCAAAAGGTTTGGTGCTCGATCGTCATTATACGGCA
CCAATCTGCAGCCCCACCCGCGCTGCGTTTCAGACAGGCAGAAATCCC
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Coding sequence (CDS) from alignment at Contig_14:825544..825741+

>mRNA_3213 ID=mRNA_3213|Name=jgi.p|Trimin1|152883|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=198bp|location=Sequence derived from alignment at Contig_14:825544..825741+ (Tribonema minus UTEX_B_3156 )
CCGCACATCATCACCATTATGCTAGACGACTGGGGCTACAATAACTGGGG
ATACCGAGCCAAAGGGCTTGCAAACAGCTTAGAAGTGAAGACCCCCAATC
TGGACCAGCTCGCAGCAAAAGGTTTGGTGCTCGATCGTCATTATACGGCA
CCAATCTGCAGCCCCACCCGCGCTGCGTTTCAGACAGGCAGAAATCCC
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