mRNA_3168 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A836CLG1_9STRA (Complex1_LYR_dom domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG1_9STRA) HSP 1 Score: 261 bits (666), Expect = 3.980e-88 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 Query: 1 VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLGEHGF 396 VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLGEHGF Sbjct: 1 VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLGEHGF 132
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A7S2S2D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2D5_9STRA) HSP 1 Score: 105 bits (261), Expect = 2.230e-26 Identity = 59/131 (45.04%), Postives = 87/131 (66.41%), Query Frame = 1 Query: 1 VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEG--AVKVVYQDGKLVEHVQT-DRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLG 384 V+ +YR LL ++ + +R +A VR+ F+ H E+ +E++ QLL QA+SRLS+LK+VTPR+ G + VYQ+GK ++ + RA SNWTGSNMDPDSV++H+H L+RAGF+D+ H G Sbjct: 9 VLPLYRQLLFLSQHISDVKKRPEAVALVRDAFREHRLETDEERIQQLLAQAESRLSFLKMVTPREYHRLGGQQSTYYVYQNGKRLDDGSARTQDRARHSNWTGSNMDPDSVAKHQHLLNRAGFQDNSHAKG 139
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A7S3HMX3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMX3_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 7.970e-23 Identity = 55/127 (43.31%), Postives = 77/127 (60.63%), Query Frame = 1 Query: 10 IYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARN--QEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLG 384 +YR++L+ AR LP A+R D +Q+R+GF+A + +L +A S L YLKIVTPR + Q G K V+ D + + P+SNWTGSNMDPDSV+RH +L RAGFK++ + G Sbjct: 15 LYRNMLRYARSLPA-AKRNDGIEQIRKGFRAGKETDDPALIKAMLEKANSTLGYLKIVTPRSPKQHVQTGKTKTVFGDDSM-------KLSRPVSNWTGSNMDPDSVARHERSLKRAGFKNNADMKG 133
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A2R5GRX5_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRX5_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 4.880e-21 Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 1 Query: 10 IYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGF 360 +Y+ LL++ARRLP+ A+RA A Q+VR+ FKAH E S EK+ +LLN AQS+L YLKIVTPR +R+ G ++V +DGK VE RAP +++D D++++H + + R F Sbjct: 16 LYKQLLQTARRLPE-AQRAAAAQEVRDKFKAHAAEGSPEKVQELLNLAQSKLGYLKIVTPRTSRDATGKARLVLRDGKWVEGSARLMDRAPHDK---TSVDADALAKHNYLMERQHF 128
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A6U5IKK5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5IKK5_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.150e-20 Identity = 49/127 (38.58%), Postives = 80/127 (62.99%), Query Frame = 1 Query: 13 YRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARN---QEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLG 384 +R + + RRLP P +RADA + +R G++ H+ + E+ + LL +A+ +++YL+++TP+D Q+G+V+ VY + E RAP+SNW GSN+DP+SV RH L R G++D+ H G Sbjct: 25 FRSIHRLIRRLPSPKDRADALRDLRAGYRTHLDVAPAERDSLLL-EAEKKMAYLRMITPKDRTRDGPQQGSVRYVY--AREGEGGNGTVRRAPVSNWHGSNLDPESVKRHHQLLRRGGWRDNAHAKG 148
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A448YU73_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU73_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 4.940e-13 Identity = 48/141 (34.04%), Postives = 77/141 (54.61%), Query Frame = 1 Query: 13 YRHLLKSARRLPKPAERA-----DAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDA-----RNQEGAVKV---VYQDGKLVEHVQTDRPRAP----ISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLG 384 YR LL+ RLP+ + A ++ + +R F+ + + E + L +A+S+ S+LK+VTPR+ R +EGA VY++G+ +E R R +SNW G N+DPDSV +H + L R GF+++ H G Sbjct: 13 YRSLLRLVHRLPEASSPASLSPEESLRSLRSAFRTPL--APGESVGDRLEEAESKRSFLKMVTPRERPSSSRRTEEGASPSRVWVYRNGERLERDGASRVRDKNGRVVSNWDGKNLDPDSVKQHNYQLKRMGFRNNAHAKG 151
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A7S2HLR1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HLR1_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 8.970e-13 Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 1 Query: 1 VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRD-----ARNQEGAVKVVY-------QDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLG 384 V+ YR L K RRLP P ++ + QQ+R+ +KA+ + + LL +A +++YL+I+TP+D +++Q + VY QDG Q + SNW+G NMDP SV RH+ LSRAGF ++ H G Sbjct: 13 VLSTYRTLHKLIRRLPTP-QQPSSLQQLRQTYKANATVPPSQ-IQPLLEEAGKKIAYLRIITPKDKWRGDSKSQSAETRWVYNGKGEKIQDGVGTPSHQKGKVH---SNWSGGNMDPCSVKRHKQQLSRAGFVNNLHAKG 147
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A2D4BZA9_PYTIN (Complex1_LYR_dom domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZA9_PYTIN) HSP 1 Score: 66.2 bits (160), Expect = 2.970e-11 Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1 Query: 10 IYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHG 372 IY+ LL+ A+ +P A+R QQ+R F++H+ S ++++ LL +AQS++ +LKIVTPR AR+ G +VY G E V D + + ++ + ++ RH L R F D G Sbjct: 14 IYKKLLRLAKSIPDVAKRESTVQQIRSEFRSHLDSSDPKEISALLQRAQSKIGFLKIVTPR-ARSDSGRTNIVYMKG---ERVDGDSVSEEGARYKTADFE-SNLRRHNQLLRRQHFLDRG 129
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A3R7JVW5_9STRA (Complex1_LYR_dom domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JVW5_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 2.570e-9 Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 1 Query: 10 IYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRD-ARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKD 366 +Y+ LL+ A+ LP+P +R + Q+R F+ H S +++++LL AQS LSYLKIVTPRD + G + +Y++G+ V + + + + +M+ + RH + R F D Sbjct: 11 LYKKLLRMAQALPEP-KRHQSLSQIRREFRNHGDLSDPKEVSKLLQLAQSSLSYLKIVTPRDETESNSGVQRYIYRNGQRVNAAELEEKGEENARYKTQDMEA-GLKRHHQLMRRQHFMD 128
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A484E4S1_BRELC (Complex1_LYR_dom domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4S1_BRELC) HSP 1 Score: 60.8 bits (146), Expect = 4.770e-9 Identity = 39/119 (32.77%), Postives = 65/119 (54.62%), Query Frame = 1 Query: 10 IYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKD 366 +Y+ LL+ A+ LP P +R + Q+R F+ H + + K+++L+ +AQS LSYLKI+TPR + G + VY++GK V + + + W ++ + RH L R F D Sbjct: 28 LYKKLLRMAQNLPAP-KRQSSIDQIRREFRCHEN-LTDSKVSELIERAQSSLSYLKIITPR-TESHTGIQRFVYRNGKRVSATEFEAKEGEPARWKTQDIKA-GLKRHHQLLRRQHFMD 142 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3168 ID=mRNA_3168|Name=jgi.p|Trimin1|147878|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_14:480953..482650- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGATTCGCATATACCGCCATTTGCTGAAGTCAGCAAGGCGACTACCCAAback to top protein sequence of jgi.p|Trimin1|147878 >Trimin1|147878|gw1.14.181.1 ID=Trimin1|147878|gw1.14.181.1|Name=jgi.p|Trimin1|147878|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQback to top mRNA from alignment at Contig_14:480953..482650- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3168 ID=mRNA_3168|Name=jgi.p|Trimin1|147878|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1698bp|location=Sequence derived from alignment at Contig_14:480953..482650- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_14:480953..482650- >mRNA_3168 ID=mRNA_3168|Name=jgi.p|Trimin1|147878|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_14:480953..482650- (Tribonema minus UTEX_B_3156 )back to top |