mRNA_3168 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|147878
Unique NamemRNA_3168
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A836CLG1_9STRA (Complex1_LYR_dom domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG1_9STRA)

HSP 1 Score: 261 bits (666), Expect = 3.980e-88
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1
Query:    1 VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLGEHGF 396
            VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLGEHGF
Sbjct:    1 VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLGEHGF 132          
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A7S2S2D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2D5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.230e-26
Identity = 59/131 (45.04%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    1 VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEG--AVKVVYQDGKLVEHVQT-DRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLG 384
            V+ +YR LL  ++ +    +R +A   VR+ F+ H  E+ +E++ QLL QA+SRLS+LK+VTPR+     G  +   VYQ+GK ++      + RA  SNWTGSNMDPDSV++H+H L+RAGF+D+ H  G
Sbjct:    9 VLPLYRQLLFLSQHISDVKKRPEAVALVRDAFREHRLETDEERIQQLLAQAESRLSFLKMVTPREYHRLGGQQSTYYVYQNGKRLDDGSARTQDRARHSNWTGSNMDPDSVAKHQHLLNRAGFQDNSHAKG 139          
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A7S3HMX3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMX3_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.970e-23
Identity = 55/127 (43.31%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   10 IYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARN--QEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLG 384
            +YR++L+ AR LP  A+R D  +Q+R+GF+A         +  +L +A S L YLKIVTPR  +   Q G  K V+ D  +       +   P+SNWTGSNMDPDSV+RH  +L RAGFK++  + G
Sbjct:   15 LYRNMLRYARSLPA-AKRNDGIEQIRKGFRAGKETDDPALIKAMLEKANSTLGYLKIVTPRSPKQHVQTGKTKTVFGDDSM-------KLSRPVSNWTGSNMDPDSVARHERSLKRAGFKNNADMKG 133          
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A2R5GRX5_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRX5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.880e-21
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   10 IYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGF 360
            +Y+ LL++ARRLP+ A+RA A Q+VR+ FKAH  E S EK+ +LLN AQS+L YLKIVTPR +R+  G  ++V +DGK VE       RAP      +++D D++++H + + R  F
Sbjct:   16 LYKQLLQTARRLPE-AQRAAAAQEVRDKFKAHAAEGSPEKVQELLNLAQSKLGYLKIVTPRTSRDATGKARLVLRDGKWVEGSARLMDRAPHDK---TSVDADALAKHNYLMERQHF 128          
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A6U5IKK5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5IKK5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.150e-20
Identity = 49/127 (38.58%), Postives = 80/127 (62.99%), Query Frame = 1
Query:   13 YRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARN---QEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLG 384
            +R + +  RRLP P +RADA + +R G++ H+  +  E+ + LL +A+ +++YL+++TP+D      Q+G+V+ VY   +  E       RAP+SNW GSN+DP+SV RH   L R G++D+ H  G
Sbjct:   25 FRSIHRLIRRLPSPKDRADALRDLRAGYRTHLDVAPAERDSLLL-EAEKKMAYLRMITPKDRTRDGPQQGSVRYVY--AREGEGGNGTVRRAPVSNWHGSNLDPESVKRHHQLLRRGGWRDNAHAKG 148          
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A448YU73_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU73_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.940e-13
Identity = 48/141 (34.04%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   13 YRHLLKSARRLPKPAERA-----DAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDA-----RNQEGAVKV---VYQDGKLVEHVQTDRPRAP----ISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLG 384
            YR LL+   RLP+ +  A     ++ + +R  F+  +  +  E +   L +A+S+ S+LK+VTPR+      R +EGA      VY++G+ +E     R R      +SNW G N+DPDSV +H + L R GF+++ H  G
Sbjct:   13 YRSLLRLVHRLPEASSPASLSPEESLRSLRSAFRTPL--APGESVGDRLEEAESKRSFLKMVTPRERPSSSRRTEEGASPSRVWVYRNGERLERDGASRVRDKNGRVVSNWDGKNLDPDSVKQHNYQLKRMGFRNNAHAKG 151          
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A7S2HLR1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HLR1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 8.970e-13
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    1 VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRD-----ARNQEGAVKVVY-------QDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLG 384
            V+  YR L K  RRLP P ++  + QQ+R+ +KA+      + +  LL +A  +++YL+I+TP+D     +++Q    + VY       QDG      Q  +     SNW+G NMDP SV RH+  LSRAGF ++ H  G
Sbjct:   13 VLSTYRTLHKLIRRLPTP-QQPSSLQQLRQTYKANATVPPSQ-IQPLLEEAGKKIAYLRIITPKDKWRGDSKSQSAETRWVYNGKGEKIQDGVGTPSHQKGKVH---SNWSGGNMDPCSVKRHKQQLSRAGFVNNLHAKG 147          
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A2D4BZA9_PYTIN (Complex1_LYR_dom domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZA9_PYTIN)

HSP 1 Score: 66.2 bits (160), Expect = 2.970e-11
Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   10 IYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHG 372
            IY+ LL+ A+ +P  A+R    QQ+R  F++H+  S  ++++ LL +AQS++ +LKIVTPR AR+  G   +VY  G   E V  D      + +  ++ +  ++ RH   L R  F D G
Sbjct:   14 IYKKLLRLAKSIPDVAKRESTVQQIRSEFRSHLDSSDPKEISALLQRAQSKIGFLKIVTPR-ARSDSGRTNIVYMKG---ERVDGDSVSEEGARYKTADFE-SNLRRHNQLLRRQHFLDRG 129          
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A3R7JVW5_9STRA (Complex1_LYR_dom domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JVW5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.570e-9
Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query:   10 IYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRD-ARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKD 366
            +Y+ LL+ A+ LP+P +R  +  Q+R  F+ H   S  +++++LL  AQS LSYLKIVTPRD   +  G  + +Y++G+ V   + +      + +   +M+   + RH   + R  F D
Sbjct:   11 LYKKLLRMAQALPEP-KRHQSLSQIRREFRNHGDLSDPKEVSKLLQLAQSSLSYLKIVTPRDETESNSGVQRYIYRNGQRVNAAELEEKGEENARYKTQDMEA-GLKRHHQLMRRQHFMD 128          
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Match: A0A484E4S1_BRELC (Complex1_LYR_dom domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4S1_BRELC)

HSP 1 Score: 60.8 bits (146), Expect = 4.770e-9
Identity = 39/119 (32.77%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   10 IYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTGSNMDPDSVSRHRHTLSRAGFKD 366
            +Y+ LL+ A+ LP P +R  +  Q+R  F+ H +  +  K+++L+ +AQS LSYLKI+TPR   +  G  + VY++GK V   + +      + W   ++    + RH   L R  F D
Sbjct:   28 LYKKLLRMAQNLPAP-KRQSSIDQIRREFRCHEN-LTDSKVSELIERAQSSLSYLKIITPR-TESHTGIQRFVYRNGKRVSATEFEAKEGEPARWKTQDIKA-GLKRHHQLLRRQHFMD 142          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|147878 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A836CLG1_9STRA3.980e-88100.00Complex1_LYR_dom domain-containing protein (Fragme... [more]
A0A7S2S2D5_9STRA2.230e-2645.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3HMX3_9STRA7.970e-2343.31Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2R5GRX5_9STRA4.880e-2146.15Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A6U5IKK5_9STRA2.150e-2038.58Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A448YU73_9STRA4.940e-1334.04Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2HLR1_9STRA8.970e-1336.43Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A2D4BZA9_PYTIN2.970e-1134.71Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A3R7JVW5_9STRA2.570e-932.50Complex1_LYR_dom domain-containing protein n=3 Tax... [more]
A0A484E4S1_BRELC4.770e-932.77Complex1_LYR_dom domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:480953..482650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|147878|gw1.14.181.1
DescriptionComplex 1 protein (LYR family)
COG categoryS
Max annot lvl4776|Peronosporales
EggNOG OGs2C8G9@1|root,2S386@2759|Eukaryota,3QG04@4776|Peronosporales
Evalue9.49e-11
Seed ortholog4787.PITG_18455T0
Hectar predicted targeting categorymitochondrion
TranscriptId148200
TrackFilteredModels1
ProteinId147878
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147878gene_3168Tribonema minus UTEX_B_3156 geneContig_14 480953..482650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|147878Trimin1|147878|gw1.14.181.1Tribonema minus UTEX_B_3156 polypeptideContig_14 480953..482650 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3168_2exon_3168_2Tribonema minus UTEX_B_3156 exonContig_14 480953..481267 -
exon_3168_1exon_3168_1Tribonema minus UTEX_B_3156 exonContig_14 482570..482650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3168CDS_3168Tribonema minus UTEX_B_3156 CDSContig_14 482570..482650 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3168 ID=mRNA_3168|Name=jgi.p|Trimin1|147878|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=396bp|location=Sequence derived from alignment at Contig_14:480953..482650- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGATTCGCATATACCGCCATTTGCTGAAGTCAGCAAGGCGACTACCCAA
GCCTGCAGAGAGGGCAGATGCTTTTCAACAGGTGCGCGAAGGCTTCAAGG
CGCACATGCACGAGTCCAGCCAGGAGAAGCTCGCGCAGCTGCTCAACCAG
GCGCAGAGCCGCCTGTCCTACCTCAAGATCGTCACGCCGCGCGACGCGCG
CAACCAGGAGGGCGCCGTTAAAGTAGTCTATCAGGACGGCAAGCTCGTAG
AGCACGTGCAGACGGATCGGCCGCGCGCGCCGATATCGAATTGGACCGGG
AGCAATATGGACCCGGACAGTGTGTCGCGGCACCGGCATACGCTGTCGCG
CGCCGGGTTCAAGGACCACGGGCACGTGCTGGGCGAGCACGGCTTT
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protein sequence of jgi.p|Trimin1|147878

>Trimin1|147878|gw1.14.181.1 ID=Trimin1|147878|gw1.14.181.1|Name=jgi.p|Trimin1|147878|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=132bp
VIRIYRHLLKSARRLPKPAERADAFQQVREGFKAHMHESSQEKLAQLLNQ
AQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRPRAPISNWTG
SNMDPDSVSRHRHTLSRAGFKDHGHVLGEHGF
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mRNA from alignment at Contig_14:480953..482650-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3168 ID=mRNA_3168|Name=jgi.p|Trimin1|147878|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1698bp|location=Sequence derived from alignment at Contig_14:480953..482650- (Tribonema minus UTEX_B_3156 )
GTGATTCGCATATACCGCCATTTGCTGAAGTCAGCAAGGCGACTACCCAA GCCTGCAGAGAGGGCAGATGCTTTTCAACAGGTGAATGACGAGCACTCTG AACTCAAATGCGCGCAAGGCATCAGAGGTTCAGCAGCACGTTAAGTGACT CCGGGCTCGTGTTTGTGGAGAGGCGGGTCACCTAGTAGTCAGCAGCAATT CTTGAAAGACGCACAGTATTTCCAGACCAGAGCCTCAGCTGCTTGGTGAG TTTTCTTAGTGGCAGTTGTTAGCAGCTCCAAGCAGCCAGACCTATTGTTT ATTCAGGGTCTGCAGTAAAAAACGTGCATGGCTGCTATCAAGCATGATCC TACCGTACTGCTCGATATTCTGAATCCGAAAAGGCATCGGGCGCTGGCAC AGTCAAGAGCAAACACTACTCTCGCAGCAGCATGTCGCCCATAACAGCAG TGAAACAGAACCAAGATCAGGAAGAGGTTCATAGATCGCACCATGCCATG CTACACCACGACAAAACGCGTGAACAATTACCTTCATTTTTGTGGCAGCT CAGCACACGACATGCACCTGCCACAGGCAATGTGGAAGAAGTTACAGTAG TATATCGCTTCAAGTTATACGGATTGCGTGCTTCAAAATCGCTTTTGATG TTATGATCGGACACACAGAAGTACACCACTCCCAACATCTGCTTGCTGGC ATGTATGTCACGTGTTCGCCACGCGACATGGTCGGGCTGCCGCGCTCGGT CGCTGCTCTTGCTTGTGGCAGTGCTCATCTGCCCATGAGGCTAGTGCCAG TCTGCTGCGACAGCACTATCATCCTGAAGGTGGCTGCGTCTGCTGATGCT CTGGCAGCCGATGAGCCTGCCACGCTTCATGTGTGACGAGTCAAGACCAG CAGCTCTGCGGTGACGCTGAGGCCCATTGAGGCTGTTGTCAGTCTGCTGC AAATGCACTATCAGTTTGAAGATGGGTTGATGATGCTCTGGCAGCCAATG AGCCCGTTTGTTGCATGTGTAAACAGTCAAGAGCAACAGGTCCATGGTTG AAGCTGACACTGCAGGCCGTTGCTGTCATGCTTTTGATGGCAGTATAAAT TTCGGAGCAATCCGCTTGACACATGGCAGCGCCGCTGTAATGAAGCCCCC ATCATGGGTTGTGGACAGTCACTCTGGTGGCAAGGTGCATCACAAAGTAG TAACGTGCAAACAGGTGCACCAGTCAGGACCACACTTGAAGACTTCTCTG CAGCACGTACATGACCACGCTCATGTGCCTACGCCCGATGCCTTTGCAAT GTACCCGCCTCTTGTTCCCCCCTTTGACCCCCCCCTCACCCCCCTCTTGT GCCCCCCTTTGACCCCCCCTCACCCCCCTTCAGGTGCGCGAAGGCTTCAA GGCGCACATGCACGAGTCCAGCCAGGAGAAGCTCGCGCAGCTGCTCAACC AGGCGCAGAGCCGCCTGTCCTACCTCAAGATCGTCACGCCGCGCGACGCG CGCAACCAGGAGGGCGCCGTTAAAGTAGTCTATCAGGACGGCAAGCTCGT AGAGCACGTGCAGACGGATCGGCCGCGCGCGCCGATATCGAATTGGACCG GGAGCAATATGGACCCGGACAGTGTGTCGCGGCACCGGCATACGCTGTCG CGCGCCGGGTTCAAGGACCACGGGCACGTGCTGGGCGAGCACGGCTTT
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Coding sequence (CDS) from alignment at Contig_14:480953..482650-

>mRNA_3168 ID=mRNA_3168|Name=jgi.p|Trimin1|147878|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=396bp|location=Sequence derived from alignment at Contig_14:480953..482650- (Tribonema minus UTEX_B_3156 )
GTGATTCGCATATACCGCCATTTGCTGAAGTCAGCAAGGCGACTACCCAA
GCCTGCAGAGAGGGCAGATGCTTTTCAACAGGTGCGCGAAGGCTTCAAGG
CGCACATGCACGAGTCCAGCCAGGAGAAGCTCGCGCAGCTGCTCAACCAG
GCGCAGAGCCGCCTGTCCTACCTCAAGATCGTCACGCCGCGCGACGCGCG
CAACCAGGAGGGCGCCGTTAAAGTAGTCTATCAGGACGGCAAGCTCGTAG
AGCACGTGCAGACGGATCGGCCGCGCGCGCCGATATCGAATTGGACCGGG
AGCAATATGGACCCGGACAGTGTGTCGCGGCACCGGCATACGCTGTCGCG
CGCCGGGTTCAAGGACCACGGGCACGTGCTGGGCGAGCACGGCTTT
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