mRNA_3160 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347630
Unique NamemRNA_3160
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347630 vs. uniprot
Match: A0A835ZAP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP7_9STRA)

HSP 1 Score: 206 bits (524), Expect = 4.020e-67
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 2 
Query:   11 MWQWRSRSPSARTAPTLTRSTWSKAPLRRTLACSPCRTSQRPSTRCPRTTASRSCGAGVIPAVTAVTPATLPRPRGGPFTQSDPQRRSARTCTGCCTRACPRTRRT 328
            MWQWRSRSPSARTAPTLTRSTWSKAPLRRTLACSPCRTSQRPSTRCPRTTASRSCGAGVIPAVTAVTPATLPRPRGGPFTQSDPQRRSARTCTGCCTRACPRTRRT
Sbjct:    1 MWQWRSRSPSARTAPTLTRSTWSKAPLRRTLACSPCRTSQRPSTRCPRTTASRSCGAGVIPAVTAVTPATLPRPRGGPFTQSDPQRRSARTCTGCCTRACPRTRRT 106
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BLAST of jgi.p|Trimin1|347630 vs. uniprot
Match: A0A835YYW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.070e-15
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    4 VFNVAMALKEPFGEDSTDVDPLNLVEGTIKAHVGMLAVPNLAEAEH--TVPAYDSFSELRRGGDSGGYSGYTGDAPAPARGPLHAVRSSKKVSKDLHRVLYSRLPQD 318
            +F+VAMALKEPFG DS+D+DPL  V+  +  H G L+ P++   +   ++ AYD F   +  G S            PARGPLH      +VS +LH +L  RLP D
Sbjct:  122 LFDVAMALKEPFGTDSSDIDPLVAVDRAVALHQGFLSAPSMPADKQPSSMAAYDMFHASKSPGSS---------TWQPARGPLHTATWVPQVSCELHEMLSCRLPHD 219
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BLAST of jgi.p|Trimin1|347630 vs. uniprot
Match: A0A836C9Z5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Z5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.480e-11
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    4 VFNVAMALKEPFGEDS-TDVDPLNLVEGTIKAHVGMLAVPNLAEAEHTV-PAYDSFSELRRGGDSGGYSGYTGDAPAPARGPLHAVRSSKKVSKDLHRVLYSRLPQDSK 324
            VF+VAMAL+EPFG DS  D+DPL  VEG +K H  +L +P + E E    P++D F   +    +G +      APA ARGP +        + ++ ++L +RLP+D++
Sbjct:  296 VFDVAMALREPFGIDSGLDIDPLIFVEGNMKTHKAILDMPTMLELEQPQKPSFDMFMRSKPAELAGDF------APA-ARGPSYVSTYKAPDNSEMRKMLSARLPKDAE 397
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BLAST of jgi.p|Trimin1|347630 vs. uniprot
Match: A0A835YZV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZV0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.410e-10
Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:    4 VFNVAMALKEPFGEDS-TDVDPLNLVEGTIKAHVGMLAVPNLAEAEHTV-PAYDSFSELRRGGDSGGYSGYTGDAPAPARGPLHAVRSSKKVSKDLHRVLYSRLPQD 318
            VF+VA+AL+EPFG D+  D+DPL  VE TI  H  +L +P +  +E T  P YD +   +         G+    P PARG  +    S  V++++  +L SRLP+D
Sbjct:  337 VFDVAIALREPFGLDAGLDIDPLVFVESTIVGHKALLKLPTMLGSEQTCRPTYDLWQRSKTA------EGHADFIP-PARGAAYTSSYSFPVNQEMREMLSSRLPKD 436
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347630 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZAP7_9STRA4.020e-67100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYW7_9STRA1.070e-1541.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C9Z5_9STRA1.480e-1138.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZV0_9STRA1.410e-1038.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:416091..417314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347630|estExt_Genemark1.C_Ctg_140044
Hectar predicted targeting categorymitochondrion
TranscriptId347952
TrackFilteredModels1
ProteinId347630
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347630gene_3160Tribonema minus UTEX_B_3156 geneContig_14 416091..417314 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3160_2exon_3160_2Tribonema minus UTEX_B_3156 exonContig_14 416091..416420 -
exon_3160_1exon_3160_1Tribonema minus UTEX_B_3156 exonContig_14 417294..417314 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3160UTR3_3160Tribonema minus UTEX_B_3156 three_prime_UTRContig_14 416091..416110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3160CDS_3160Tribonema minus UTEX_B_3156 CDSContig_14 417294..417304 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3160UTR5_3160Tribonema minus UTEX_B_3156 five_prime_UTRContig_14 417305..417314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347630Trimin1|347630|estExt_Genemark1.C_Ctg_140044Tribonema minus UTEX_B_3156 polypeptideContig_14 416111..417304 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3160 ID=mRNA_3160|Name=jgi.p|Trimin1|347630|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=351bp|location=Sequence derived from alignment at Contig_14:416091..417314- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCCGTCTTCAATGTGGCAATGGCGCTCAAGGAGCCCTTCGGCGAGGACAG
CACCGACGTTGACCCGCTCAACCTGGTCGAAGGCACCATTAAGGCGCACG
TTGGCATGCTCGCCGTGCCGAACCTCGCAGAGGCCGAGCACACGGTGCCC
GCGTACGACAGCTTCTCGGAGCTGCGGCGCGGGGGTGATTCCGGCGGTTA
CAGCGGTTACACCGGCGACGCTCCCGCGCCCGCGCGGGGGCCCCTTCACG
CAGTCAGATCCTCAAAGAAGGTCAGCAAGGACCTGCACCGGGTGCTGTAC
TCGCGCCTGCCCCAGGACTCGAAGGACTTGAACTAGGGCGCTTGATGTGG
A
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protein sequence of jgi.p|Trimin1|347630

>Trimin1|347630|estExt_Genemark1.C_Ctg_140044 ID=Trimin1|347630|estExt_Genemark1.C_Ctg_140044|Name=jgi.p|Trimin1|347630|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
MWQWRSRSPSARTAPTLTRSTWSKAPLRRTLACSPCRTSQRPSTRCPRTT
ASRSCGAGVIPAVTAVTPATLPRPRGGPFTQSDPQRRSARTCTGCCTRAC
PRTRRT*
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mRNA from alignment at Contig_14:416091..417314-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3160 ID=mRNA_3160|Name=jgi.p|Trimin1|347630|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1224bp|location=Sequence derived from alignment at Contig_14:416091..417314- (Tribonema minus UTEX_B_3156 )
TCCGTCTTCAATGTGGCAATGGTGAGTGACTTTCAGTATGCTTGCACCTG
CGCTAAAGTAGAATGGTAAAAACGCTGGTGGACAGCACAAGATCAAATGG
TGAAGACCTGCGAGCACATTTGTTTGATGAGGTGGAAGTGGCTTTCATCA
TCAGGTGCGCTGGCACTTGGTGCATCAAAACTTCAAGACAGGCGTAGACT
GCGCTGTGTGAGTACTTGTTCATGAACGATTTGTGTACACGCTGTCTCTG
TGGCTGACCATGATTGCAGCAAACTGACGGATTGTCACCAGAGTGACCAT
GATACACGTCACTCCCACTGCAAGGGCAGCCAGTATAATCATGGCAGAGG
GATGTGACGATCTTCACAAGTACTCATCCGCAGATTGTCAGTAGCAGGCC
CTTCTTCCAACGCATCCCGGGACCAGCGGTGCGGCAAACACGCTAAGCTT
CCCGCTCACTGTGGCGCCAGCGTGACGCCACCACACACAAGGTCCACTCC
CCGAGATGGCGCCAACCCTAACCCTAGCGCGCGTGCGCACTGCGCCGCGC
AAAAATCCCTACCCCTTGCCTGCGCGCACTGCGCCGCGCGAAAACCCTAA
CTCAAGCACGCACCGTATCGCGCGAAAACCCTGACCCTAGCCTACACACG
CACCGCGCCTCACCGCTGACCCCAAGACTAAAACCACAGGCTCTCAAGGA
GCCGTTCGGCGAGGCTATGATGGCCATGATGGCCATATTGCCCTCCACGT
GGACCCCCTCAACCTGGTTGAAGGCACCATCGAGGCTTCCCGCACACTGA
GGCACCAGCTTGACACCACCACACACTACTTACTAATAGGTCCAGTCCCC
CACATGTGCAAACCCTGACCCTAGCATGCGCGCACGCACCGCAGGCGCTC
AAGGAGCCCTTCGGCGAGGACAGCACCGACGTTGACCCGCTCAACCTGGT
CGAAGGCACCATTAAGGCGCACGTTGGCATGCTCGCCGTGCCGAACCTCG
CAGAGGCCGAGCACACGGTGCCCGCGTACGACAGCTTCTCGGAGCTGCGG
CGCGGGGGTGATTCCGGCGGTTACAGCGGTTACACCGGCGACGCTCCCGC
GCCCGCGCGGGGGCCCCTTCACGCAGTCAGATCCTCAAAGAAGGTCAGCA
AGGACCTGCACCGGGTGCTGTACTCGCGCCTGCCCCAGGACTCGAAGGAC
TTGAACTAGGGCGCTTGATGTGGA
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Coding sequence (CDS) from alignment at Contig_14:416091..417314-

>mRNA_3160 ID=mRNA_3160|Name=jgi.p|Trimin1|347630|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_14:416091..417314- (Tribonema minus UTEX_B_3156 )
ATGTGGCAATGGCGCTCAAGGAGCCCTTCGGCGAGGACAGCACCGACGTT
GACCCGCTCAACCTGGTCGAAGGCACCATTAAGGCGCACGTTGGCATGCT
CGCCGTGCCGAACCTCGCAGAGGCCGAGCACACGGTGCCCGCGTACGACA
GCTTCTCGGAGCTGCGGCGCGGGGGTGATTCCGGCGGTTACAGCGGTTAC
ACCGGCGACGCTCCCGCGCCCGCGCGGGGGCCCCTTCACGCAGTCAGATC
CTCAAAGAAGGTCAGCAAGGACCTGCACCGGGTGCTGTACTCGCGCCTGC
CCCAGGACTCGAAGGACTTGA
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