mRNA_3153 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135696
Unique NamemRNA_3153
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|135696 vs. uniprot
Match: A0A836CLC5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC5_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.390e-72
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 AAMTGQYSLVQFLRHHGVPFSRKATAAAAEAGHEDLLKQLTADGCEWNGEVVFVAAKNNDMGILRYAEELGRLAQGNNGCTGAVVDGHRDVLQWLVEHGCMPD 309
            AAMTGQYSLVQFLRHHGVPFSRKATAAAAEAGHEDLLKQLTADGCEWNGEVVFVAAKNNDMGILRYAEELGRLAQGNNGCTGAVVDGHRDVLQWLVEHGCMPD
Sbjct:    1 AAMTGQYSLVQFLRHHGVPFSRKATAAAAEAGHEDLLKQLTADGCEWNGEVVFVAAKNNDMGILRYAEELGRLAQGNNGCTGAVVDGHRDVLQWLVEHGCMPD 103
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BLAST of jgi.p|Trimin1|135696 vs. uniprot
Match: A0A835ZE13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE13_9STRA)

HSP 1 Score: 138 bits (347), Expect = 3.770e-39
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:   49 GVPFSRKATAAAAEAGHEDLLKQLTADGCEWNGEVVFVAAKNNDMGILRYAEELGRLAQGNNGCTGAVVDGHRDVLQWLVEHGCMPD 309
            GVPF+R+ATAAAAEAGH D LKQLT  GC W+GEV F+AAK+    +L YAE  GRLAQGNN CTGAVV GHRDVL+WLV HGC PD
Sbjct:    1 GVPFNRQATAAAAEAGHADYLKQLTNAGCLWSGEVAFLAAKHRHWNVLEYAENKGRLAQGNNACTGAVVGGHRDVLKWLVNHGCSPD 87
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135696 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CLC5_9STRA1.390e-72100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZE13_9STRA3.770e-3972.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:344741..345049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135696|gw1.14.47.1
Hectar predicted targeting categoryother localisation
TranscriptId136018
TrackFilteredModels1
ProteinId135696
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135696gene_3153Tribonema minus UTEX_B_3156 geneContig_14 344741..345049 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3153_1exon_3153_1Tribonema minus UTEX_B_3156 exonContig_14 344741..345049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3153CDS_3153Tribonema minus UTEX_B_3156 CDSContig_14 344741..345049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135696Trimin1|135696|gw1.14.47.1Tribonema minus UTEX_B_3156 polypeptideContig_14 344741..345049 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3153 ID=mRNA_3153|Name=jgi.p|Trimin1|135696|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=309bp|location=Sequence derived from alignment at Contig_14:344741..345049- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGCCATGACGGGGCAGTACAGCCTCGTCCAGTTTTTGCGGCACCACGG
CGTGCCTTTTAGTAGGAAGGCCACGGCCGCAGCTGCTGAAGCTGGCCACG
AAGACTTGCTTAAGCAGTTGACGGCTGATGGCTGCGAGTGGAACGGCGAA
GTGGTCTTCGTCGCTGCCAAAAATAACGATATGGGCATCCTAAGGTATGC
GGAGGAGTTAGGACGCCTAGCCCAAGGCAACAACGGCTGCACTGGCGCTG
TGGTGGACGGGCACCGGGACGTGCTGCAGTGGCTGGTCGAGCATGGCTGC
ATGCCCGAC
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protein sequence of jgi.p|Trimin1|135696

>Trimin1|135696|gw1.14.47.1 ID=Trimin1|135696|gw1.14.47.1|Name=jgi.p|Trimin1|135696|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=103bp
AAMTGQYSLVQFLRHHGVPFSRKATAAAAEAGHEDLLKQLTADGCEWNGE
VVFVAAKNNDMGILRYAEELGRLAQGNNGCTGAVVDGHRDVLQWLVEHGC
MPD
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mRNA from alignment at Contig_14:344741..345049-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3153 ID=mRNA_3153|Name=jgi.p|Trimin1|135696|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=309bp|location=Sequence derived from alignment at Contig_14:344741..345049- (Tribonema minus UTEX_B_3156 )
GCAGCCATGACGGGGCAGTACAGCCTCGTCCAGTTTTTGCGGCACCACGG
CGTGCCTTTTAGTAGGAAGGCCACGGCCGCAGCTGCTGAAGCTGGCCACG
AAGACTTGCTTAAGCAGTTGACGGCTGATGGCTGCGAGTGGAACGGCGAA
GTGGTCTTCGTCGCTGCCAAAAATAACGATATGGGCATCCTAAGGTATGC
GGAGGAGTTAGGACGCCTAGCCCAAGGCAACAACGGCTGCACTGGCGCTG
TGGTGGACGGGCACCGGGACGTGCTGCAGTGGCTGGTCGAGCATGGCTGC
ATGCCCGAC
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Coding sequence (CDS) from alignment at Contig_14:344741..345049-

>mRNA_3153 ID=mRNA_3153|Name=jgi.p|Trimin1|135696|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=309bp|location=Sequence derived from alignment at Contig_14:344741..345049- (Tribonema minus UTEX_B_3156 )
GCAGCCATGACGGGGCAGTACAGCCTCGTCCAGTTTTTGCGGCACCACGG
CGTGCCTTTTAGTAGGAAGGCCACGGCCGCAGCTGCTGAAGCTGGCCACG
AAGACTTGCTTAAGCAGTTGACGGCTGATGGCTGCGAGTGGAACGGCGAA
GTGGTCTTCGTCGCTGCCAAAAATAACGATATGGGCATCCTAAGGTATGC
GGAGGAGTTAGGACGCCTAGCCCAAGGCAACAACGGCTGCACTGGCGCTG
TGGTGGACGGGCACCGGGACGTGCTGCAGTGGCTGGTCGAGCATGGCTGC
ATGCCCGAC
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