mRNA_3146 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347621
Unique NamemRNA_3146
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347621 vs. uniprot
Match: A0A835Z8E7_9STRA (RGS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8E7_9STRA)

HSP 1 Score: 403 bits (1035), Expect = 3.900e-141
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1 
Query:    1 MALLQKWWCEASWWKDSLLHGGGQHPTRSRNGSSSGSXXXXXXXRSGSISDIDAGALELDVALRVPLVLAQFQAYCERTHCTESLEFILRADGLSRLQAGSEELICELQTIAMEFCTPGGDKEINVGSSTREQALELVEKNDASAFAACYLQVYHMLASGVWPRFLASPECLKVHIGKHVLAAESRTAEPSPSSSSHSLDAFGARQPSGTL 633
            MALLQKWWCEASWWKDSLLHGGGQHPTRSRNGSSSGSXXXXXXXRSGSISDIDAGALELDVALRVPLVLAQFQAYCERTHCTESLEFILRADGLSRLQAGSEELICELQTIAMEFCTPGGDKEINVGSSTREQALELVEKNDASAFAACYLQVYHMLASGVWPRFLASPECLKVHIGKHVLAAESRTAEPSPSSSSHSLDAFGARQPSGTL
Sbjct:    1 MALLQKWWCEASWWKDSLLHGGGQHPTRSRNGSSSGSXXXXXXXRSGSISDIDAGALELDVALRVPLVLAQFQAYCERTHCTESLEFILRADGLSRLQAGSEELICELQTIAMEFCTPGGDKEINVGSSTREQALELVEKNDASAFAACYLQVYHMLASGVWPRFLASPECLKVHIGKHVLAAESRTAEPSPSSSSHSLDAFGARQPSGTL 211
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347621 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z8E7_9STRA3.900e-141100.00RGS domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:291783..293437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347621|estExt_Genemark1.C_Ctg_140033
BRITEko00000,ko00001
KEGG Pathwayko04022,ko04740,ko04921,map04022,map04740,map04921
KEGG koko:K18154
GOsGO:0000003,GO:0001505,GO:0001558,GO:0001932,GO:0001933,GO:0001965,GO:0001975,GO:0003008,GO:0003012,GO:0003013,GO:0003018,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006417,GO:0006469,GO:0006937,GO:0006940,GO:0006942,GO:0007154,GO:0007165,GO:0007186,GO:0007275,GO:0007276,GO:0007283,GO:0007292,GO:0007399,GO:0007417,GO:0007420,GO:0007565,GO:0008015,GO:0008016,GO:0008047,GO:0008092,GO:0008150,GO:0008277,GO:0009410,GO:0009636,GO:0009889,GO:0009890,GO:0009892,GO:0009898,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010517,GO:0010519,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010608,GO:0010611,GO:0010614,GO:0010629,GO:0010638,GO:0010646,GO:0010648,GO:0010720,GO:0010721,GO:0010958,GO:0010975,GO:0010976,GO:0014075,GO:0014741,GO:0014743,GO:0015631,GO:0016020,GO:0016202,GO:0017148,GO:0019220,GO:0019222,GO:0019953,GO:0022008,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030234,GO:0030308,GO:0030695,GO:0030728,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031334,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032886,GO:0032890,GO:0032891,GO:0033043,GO:0033673,GO:0034248,GO:0034249,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0035150,GO:0035296,GO:0040008,GO:0042221,GO:0042311,GO:0042325,GO:0042326,GO:0042493,GO:0042995,GO:0043005,GO:0043085,GO:0043086,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043269,GO:0043271,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043502,GO:0043547,GO:0043549,GO:0043949,GO:0043951,GO:0044057,GO:0044070,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044557,GO:0044703,GO:0044706,GO:0045444,GO:0045471,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045666,GO:0045744,GO:0045823,GO:0045843,GO:0045859,GO:0045926,GO:0045932,GO:0045933,GO:0045936,GO:0045986,GO:0045989,GO:0046620,GO:0046621,GO:0046677,GO:0048232,GO:0048487,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048634,GO:0048635,GO:0048638,GO:0048640,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050873,GO:0050880,GO:0050896,GO:0051049,GO:0051051,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051147,GO:0051148,GO:0051153,GO:0051154,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051248,GO:0051336,GO:0051338,GO:0051345,GO:0051346,GO:0051348,GO:0051493,GO:0051495,GO:0051580,GO:0051581,GO:0051588,GO:0051589,GO:0051704,GO:0051716,GO:0051952,GO:0051953,GO:0051955,GO:0051956,GO:0051960,GO:0051962,GO:0055021,GO:0055022,GO:0055024,GO:0055026,GO:0055117,GO:0055119,GO:0060087,GO:0060135,GO:0060191,GO:0060192,GO:0060255,GO:0060284,GO:0060322,GO:0060420,GO:0060452,GO:0060589,GO:0061050,GO:0061052,GO:0061117,GO:0065007,GO:0065008,GO:0065009,GO:0070507,GO:0071877,GO:0071900,GO:0071901,GO:0071944,GO:0080090,GO:0090066,GO:0090075,GO:0090257,GO:0097305,GO:0097366,GO:0097458,GO:0097746,GO:0097755,GO:0098552,GO:0098562,GO:0098772,GO:0120025,GO:0120035,GO:0140193,GO:0140194,GO:1900923,GO:1900924,GO:1901698,GO:1901700,GO:1901861,GO:1901862,GO:1902531,GO:1902532,GO:1902903,GO:1902905,GO:1903522,GO:1903524,GO:1903789,GO:1903792,GO:1903959,GO:1903960,GO:1904062,GO:1904063,GO:1905207,GO:1905208,GO:2000026,GO:2000112,GO:2000113,GO:2000725,GO:2000726,GO:2001023,GO:2001024
Preferred nameRGS2
Descriptionregulator of G-protein signaling
COG categoryT
Max annot lvl33208|Metazoa
EggNOG OGsKOG3589@1|root,KOG3589@2759|Eukaryota,39S14@33154|Opisthokonta,3BHAI@33208|Metazoa,3CY18@33213|Bilateria,486AZ@7711|Chordata,497MC@7742|Vertebrata,4A3I7@7898|Actinopterygii
Evalue1.43e-07
Seed ortholog8090.ENSORLP00000015354
Hectar predicted targeting categoryother localisation
TranscriptId347943
TrackFilteredModels1
ProteinId347621
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347621gene_3146Tribonema minus UTEX_B_3156 geneContig_14 291783..293437 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3146_1exon_3146_1Tribonema minus UTEX_B_3156 exonContig_14 291783..292238 +
exon_3146_2exon_3146_2Tribonema minus UTEX_B_3156 exonContig_14 293145..293437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3146CDS_3146Tribonema minus UTEX_B_3156 CDSContig_14 291783..292238 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3146UTR3_3146Tribonema minus UTEX_B_3156 three_prime_UTRContig_14 293325..293437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347621Trimin1|347621|estExt_Genemark1.C_Ctg_140033Tribonema minus UTEX_B_3156 polypeptideContig_14 291783..293324 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3146 ID=mRNA_3146|Name=jgi.p|Trimin1|347621|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=749bp|location=Sequence derived from alignment at Contig_14:291783..293437+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTGCTGCAGAAATGGTGGTGCGAGGCATCCTGGTGGAAGGACTC
GCTGCTGCATGGCGGGGGGCAACACCCAACTCGGAGCAGGAACGGCAGCA
GCAGCGGGAGTAGCGACAGCTCGAGGAGCAGCCGGAGCGGCAGCATTAGT
GACATAGACGCCGGGGCGTTAGAGCTGGATGTCGCCCTGCGCGTACCGCT
GGTGTTGGCGCAGTTCCAGGCTTACTGTGAGCGCACACACTGCACAGAGT
CGCTGGAGTTTATCCTGAGGGCCGATGGCCTGAGCCGCCTGCAGGCGGGG
TCAGAGGAGCTCATCTGCGAGCTTCAGACCATAGCCATGGAGTTTTGTAC
GCCAGGAGGGGATAAGGAGATCAATGTGGGGTCCAGCACTAGGGAGCAGG
CTCTGGAGTTGGTGGAGAAGAATGATGCCTCAGCGTTTGCCGCCTGCTAC
TTGCAGGTGTACCACATGCTCGCCTCCGGCGTCTGGCCGCGCTTCCTCGC
CAGCCCGGAGTGCCTCAAGGTGCACATCGGCAAGCACGTGCTTGCAGCCG
AGTCGCGAACCGCGGAGCCGTCGCCCAGCAGCAGCTCGCACTCGCTGGAC
GCATTCGGCGCGCGGCAGCCGAGCGGCACTCTCTGAGCGCTGCTGTCGAT
ACGGCGCGCTGCTGCCAGTACGGCGCGCTGACTTCGGCCAGTGAAGGAAG
CGACACTCATTGGTGATGGTCATCGGGAGGCGCGGCAGCGGCAGAAGCG
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protein sequence of jgi.p|Trimin1|347621

>Trimin1|347621|estExt_Genemark1.C_Ctg_140033 ID=Trimin1|347621|estExt_Genemark1.C_Ctg_140033|Name=jgi.p|Trimin1|347621|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=212bp
MALLQKWWCEASWWKDSLLHGGGQHPTRSRNGSSSGSSDSSRSSRSGSIS
DIDAGALELDVALRVPLVLAQFQAYCERTHCTESLEFILRADGLSRLQAG
SEELICELQTIAMEFCTPGGDKEINVGSSTREQALELVEKNDASAFAACY
LQVYHMLASGVWPRFLASPECLKVHIGKHVLAAESRTAEPSPSSSSHSLD
AFGARQPSGTL*
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mRNA from alignment at Contig_14:291783..293437+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3146 ID=mRNA_3146|Name=jgi.p|Trimin1|347621|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1655bp|location=Sequence derived from alignment at Contig_14:291783..293437+ (Tribonema minus UTEX_B_3156 )
ATGGCGTTGCTGCAGAAATGGTGGTGCGAGGCATCCTGGTGGAAGGACTC
GCTGCTGCATGGCGGGGGGCAACACCCAACTCGGAGCAGGAACGGCAGCA
GCAGCGGGAGTAGCGACAGCTCGAGGAGCAGCCGGAGCGGCAGCATTAGT
GACATAGACGCCGGGGCGTTAGAGCTGGATGTCGCCCTGCGCGTACCGCT
GGTGTTGGCGCAGTTCCAGGCTTACTGTGAGCGCACACACTGCACAGAGT
CGCTGGAGTTTATCCTGAGGGCCGATGGCCTGAGCCGCCTGCAGGCGGGG
TCAGAGGAGCTCATCTGCGAGCTTCAGACCATAGCCATGGAGTTTTGTAC
GCCAGGAGGGGATAAGGAGATCAATGTGGGGTCCAGCACTAGGGAGCAGG
CTCTGGAGTTGGTGGAGAAGAATGATGCCTCAGCGTTTGCCGCCTGCTAC
TTGCAGGTATGTGGTTGCAATGCAGGCAGTCGGCTCGCCAACATCATGTG
GTGCTGTCACATGATACAGTAAGGGTGTACATCTTGTTGGCACACCGACA
GGCAAGGGCTATGATAGTTGTTGAAGCCGTGTCAATTGCCTCGAGCTCAA
AAGGCGACAGCTGCAGGCTCCACAGGCACATGGTATGCCAGTGCAGGAGG
TTTGCAGCACATGTATTTCCTGTCTGCAGCATCCAATGACTTGCCATAAA
GTGCCAAGTGCCTTACAAAGTACATATAGGTAGGTCTCTTTCAAGGGCGC
AAATAGCAGGTCGCCGAGCTTGCACATGAGCTGTTGCACTAAAGCCCCAC
AGGCGCACCAGCAGCAGGTGGCTTCGCTGAAGTTATCAGCAGAAGCACCA
GCATGCCAATGGCCAGCAAGCGGCATTGAGAGTAACAACTTTGGCATTGA
TCTGATGCCACCTGTGGCGGCGTATTCAGCTGCGGTGTTGTTGCATTCAA
CAAACGCCACAAGGCGTTCACCTCGGCGCGACCTCGGCATTCATTCGAGC
AAATGCACGCAGCGATGCTCAGCCAGCAAAGCACGGCCTGCACATCAACT
GCATGAACCAACAGTCTGAGTGCTTTCGTTGTCAACATTTCACCGCCGGC
GCACATTGAGGCATGTGCTGATGTCAGGTCGAGTGCGATGAAGTGCAGCG
TACTTCAAGTTGTATCGCCAGTCCCTCAGCAAAGCCAGTCATCGCCACCG
ATGTCCAACGCATTACCGTGTCACTTTGCACACGCATTCGGTACCAAGCA
GCGCTGAATCAGCCGGCATGCGCACCTCGCGCGCATGCAGCTCTGGTGTC
TTCATTCCCTGTCGCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCACGC
GCACGTGCGCAGGTGTACCACATGCTCGCCTCCGGCGTCTGGCCGCGCTT
CCTCGCCAGCCCGGAGTGCCTCAAGGTGCACATCGGCAAGCACGTGCTTG
CAGCCGAGTCGCGAACCGCGGAGCCGTCGCCCAGCAGCAGCTCGCACTCG
CTGGACGCATTCGGCGCGCGGCAGCCGAGCGGCACTCTCTGAGCGCTGCT
GTCGATACGGCGCGCTGCTGCCAGTACGGCGCGCTGACTTCGGCCAGTGA
AGGAAGCGACACTCATTGGTGATGGTCATCGGGAGGCGCGGCAGCGGCAG
AAGCG
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Coding sequence (CDS) from alignment at Contig_14:291783..293437+

>mRNA_3146 ID=mRNA_3146|Name=jgi.p|Trimin1|347621|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=636bp|location=Sequence derived from alignment at Contig_14:291783..293437+ (Tribonema minus UTEX_B_3156 )
ATGGCGTTGCTGCAGAAATGGTGGTGCGAGGCATCCTGGTGGAAGGACTC
GCTGCTGCATGGCGGGGGGCAACACCCAACTCGGAGCAGGAACGGCAGCA
GCAGCGGGAGTAGCGACAGCTCGAGGAGCAGCCGGAGCGGCAGCATTAGT
GACATAGACGCCGGGGCGTTAGAGCTGGATGTCGCCCTGCGCGTACCGCT
GGTGTTGGCGCAGTTCCAGGCTTACTGTGAGCGCACACACTGCACAGAGT
CGCTGGAGTTTATCCTGAGGGCCGATGGCCTGAGCCGCCTGCAGGCGGGG
TCAGAGGAGCTCATCTGCGAGCTTCAGACCATAGCCATGGAGTTTTGTAC
GCCAGGAGGGGATAAGGAGATCAATGTGGGGTCCAGCACTAGGGAGCAGG
CTCTGGAGTTGGTGGAGAAGAATGATGCCTCAGCGTTTGCCGCCTGCTAC
TTGCAGGTGTACCACATGCTCGCCTCCGGCGTCTGGCCGCGCTTCCTCGC
CAGCCCGGAGTGCCTCAAGGTGCACATCGGCAAGCACGTGCTTGCAGCCG
AGTCGCGAACCGCGGAGCCGTCGCCCAGCAGCAGCTCGCACTCGCTGGAC
GCATTCGGCGCGCGGCAGCCGAGCGGCACTCTCTGA
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