mRNA_3112 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161135
Unique NamemRNA_3112
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161135 vs. uniprot
Match: A0A835Z7H2_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H2_9STRA)

HSP 1 Score: 268 bits (684), Expect = 4.920e-91
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1
Query:    1 MSPPHAAVTALVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVRAAVPVGCRLHLHGSPPCQQLSSLNPGGDREEGARLVTWYLDVVDALRPDSWTMEQ 381
            MSPPHAAVTALVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVRAAVPVGCRLHLHGSPPCQQLSSLNPGGDREEGARLVTWYLDVVDALRPDSWTMEQ
Sbjct:    1 MSPPHAAVTALVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVRAAVPVGCRLHLHGSPPCQQLSSLNPGGDREEGARLVTWYLDVVDALRPDSWTMEQ 127          
BLAST of jgi.p|Trimin1|161135 vs. uniprot
Match: A0A835ZAI0_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI0_9STRA)

HSP 1 Score: 228 bits (580), Expect = 8.590e-73
Identity = 108/122 (88.52%), Postives = 111/122 (90.98%), Query Frame = 1
Query:   16 AAVTALVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVRAAVPVGCRLHLHGSPPCQQLSSLNPGGDREEGARLVTWYLDVVDALRPDSWTMEQ 381
            A+V  +VDLFCGIGGFSEGAR AGA VALAVDSWRAALD HASRHP+AEHWCEELGGDVAEFA RVRAAVP GCRLHLH SPPCQQLSSLNPGGDR EG RLVTWYLDVVDALRP SWTMEQ
Sbjct:    9 ASVVVVVDLFCGIGGFSEGARQAGASVALAVDSWRAALDAHASRHPEAEHWCEELGGDVAEFAGRVRAAVPTGCRLHLHRSPPCQQLSSLNPGGDRVEGMRLVTWYLDVVDALRPHSWTMEQ 130          
BLAST of jgi.p|Trimin1|161135 vs. uniprot
Match: A0A836CDD9_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDD9_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.080e-60
Identity = 94/118 (79.66%), Postives = 100/118 (84.75%), Query Frame = 1
Query:   28 ALVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVRAAVPVGCRLHLHGSPPCQQLSSLNPGGDREEGARLVTWYLDVVDALRPDSWTMEQ 381
            A+VDLFCGI GFSEGA  AGA V LAVDSW +ALD HASRHP+A HW EELGGDVAEFA RVRA VP G RLH+HGSPPCQQLSSL  GGDR EG RLVTWYL++VDAL PDSWTMEQ
Sbjct:    3 AVVDLFCGIRGFSEGAAQAGASVVLAVDSWASALDAHASRHPEALHWREELGGDVAEFAARVRAVVPPGARLHMHGSPPCQQLSSLKQGGDRVEGLRLVTWYLNLVDALAPDSWTMEQ 120          
BLAST of jgi.p|Trimin1|161135 vs. uniprot
Match: A0A836CC81_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC81_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.950e-43
Identity = 77/123 (62.60%), Postives = 89/123 (72.36%), Query Frame = 1
Query:   31 LVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELG-GDVAEFARRVRA----AVPVGCRLHLHGSPPCQQLSSLNPGG-DREEGARLVTWYLDVVDALRPDSWTMEQ 381
            ++DLFCG GGFSEGAR AGA V LAVD WR ALDVHA+ HPDAEHWCEE+G GD AE A+R+RA    A+P G  +HLH SPPCQ LS  N    D   G RL  + LDV++A R DSWT+EQ
Sbjct:    4 VIDLFCGAGGFSEGARQAGAVVVLAVDCWREALDVHAANHPDAEHWCEEIGTGDPAELAQRLRAFAANALPPGAPVHLHASPPCQSLSKANRASRDTSGGLRLTRFALDVIEAARFDSWTVEQ 126          
BLAST of jgi.p|Trimin1|161135 vs. uniprot
Match: A0A836CCV2_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV2_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.970e-43
Identity = 73/121 (60.33%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   31 LVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVRA----AVPVGCRLHLHGSPPCQQLSSLNPGGDREEGARLVTWYLDVVDALRPDSWTMEQ 381
            ++DLFCG GGFS GA   GA V LAVD WR ALDVHA+ HP A HWCE LGG  AEFA R+R     AVP G ++HLH SPPCQ LS +N G D   G  LV W  ++VD +RPDSWT+EQ
Sbjct:    3 VIDLFCGAGGFSTGAAQEGAVVVLAVDGWRDALDVHAANHPGALHWCETLGGPPAEFAERLRGVIAEAVPPGEQVHLHASPPCQNLSQVNAGRDEGVGLALVAWCFELVDLVRPDSWTVEQ 123          
BLAST of jgi.p|Trimin1|161135 vs. uniprot
Match: A0A835YWN5_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWN5_9STRA)

HSP 1 Score: 145 bits (367), Expect = 8.400e-41
Identity = 73/121 (60.33%), Postives = 85/121 (70.25%), Query Frame = 1
Query:   31 LVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVRAAV----PVGCRLHLHGSPPCQQLSSLNPGGDREEGARLVTWYLDVVDALRPDSWTMEQ 381
            ++DLFCG GGFSEGA  AGA V LAVD W+AALDVHA+ H D EHW E LGGD A+F  R+R  V    P G  +HLHGSPPCQ LSS+N   +  EG RLV W   V D L+PDS+T+EQ
Sbjct:    4 VIDLFCGAGGFSEGASRAGAVVILAVDCWKAALDVHAANHGDCEHWNEPLGGDPAQFVARLRRVVSRRVPCGGLVHLHGSPPCQNLSSVNCMRNEREGMRLVEWTFAVGDLLQPDSFTVEQ 124          
BLAST of jgi.p|Trimin1|161135 vs. uniprot
Match: A0A836CNB4_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB4_9STRA)

HSP 1 Score: 136 bits (343), Expect = 6.830e-37
Identity = 69/121 (57.02%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   31 LVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVRAAV----PVGCRLHLHGSPPCQQLSSLNPGGDREEGARLVTWYLDVVDALRPDSWTMEQ 381
            ++DLFCG GGFSEGAR AGA V LAVD W+ ALDVHA  HPD EHW EELG D  EFA R+R  +    P G R+HLH SPPCQ L   N     +EG RLV W   V +AL   + T+EQ
Sbjct:    4 VIDLFCGAGGFSEGARRAGATVILAVDCWQMALDVHALNHPDVEHWLEELGEDPREFADRLRRVIADKAPPGGRVHLHASPPCQNLCGANRRRSEDEGMRLVEWSFRVAEALGSVTVTVEQ 124          
BLAST of jgi.p|Trimin1|161135 vs. uniprot
Match: A0A835Z4N3_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.920e-35
Identity = 69/128 (53.91%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   10 PHAAVTALVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVR----AAVPVGCRLHLHGSPPCQQLSSLNPGGDREEGARLVTWYLDVVDALRPDSWTMEQ 381
            P A    LV+      GFSEGAR AGA V LAVDSWR ALD HA  H +  HWCEELGGD + FA+R+R    + +P   R+H+H SPPCQ LS+ NPG D  EG RLV W   V D L   S+T+EQ
Sbjct:  196 PPAFAQRLVNAIAESAGFSEGARQAGATVVLAVDSWRDALDAHAVMHLNCTHWCEELGGDPSRFAKRLRDFIGSDLPADARVHVHASPPCQNLSAANPGRDESEGLRLVEWTFSVFDRLTNCSFTLEQ 323          
BLAST of jgi.p|Trimin1|161135 vs. uniprot
Match: A0A836CEM3_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM3_9STRA)

HSP 1 Score: 131 bits (330), Expect = 4.840e-35
Identity = 65/121 (53.72%), Postives = 83/121 (68.60%), Query Frame = 1
Query:   31 LVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVRAA----VPVGCRLHLHGSPPCQQLSSLNPGGDREEGARLVTWYLDVVDALRPDSWTMEQ 381
            ++D+F G GGF++GA+ AGA V LAVDSW+ ALDVHA  HP+ EHW E +GGD + FA R+RA     VP G  LH+H SPPCQQLS +N   +  +G  LV W   V + L PDS+T+EQ
Sbjct:    3 VIDVFSGCGGFTQGAKQAGATVILAVDSWKEALDVHALNHPETEHWHEVVGGDPSLFAGRLRAVADLKVPSGEHLHVHFSPPCQQLSGVNHSRNELKGLALVEWSFQVAELLCPDSFTVEQ 123          
BLAST of jgi.p|Trimin1|161135 vs. uniprot
Match: A0A835Z6C7_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C7_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.600e-34
Identity = 69/122 (56.56%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   31 LVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRHPDAEHWCEELGGDVAEFARRVRAA----VPVGCRLHLHGSPPCQQLSSLNPGG-DREEGARLVTWYLDVVDALRPDSWTMEQ 381
            ++DLF G GGFSEGAR AGA V LAVD W+AALDVHA+ H D  HW EE+GG  AE A R+RA     VP G  +H+H SPPCQ+LS  N    D + G RL  + LDVV A+   SWT+EQ
Sbjct:    4 VIDLFSGAGGFSEGARQAGAVVILAVDCWQAALDVHAANHLDCHHWREEVGGHPAELAGRLRAFIGANVPAGQLVHVHASPPCQRLSKANRSSRDTDVGLRLTRFALDVVQAVGCHSWTIEQ 125          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161135 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7H2_9STRA4.920e-91100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835ZAI0_9STRA8.590e-7388.52S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CDD9_9STRA1.080e-6079.66S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CC81_9STRA1.950e-4362.60S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CCV2_9STRA3.970e-4360.33S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YWN5_9STRA8.400e-4160.33S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CNB4_9STRA6.830e-3757.02S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835Z4N3_9STRA1.920e-3553.91S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CEM3_9STRA4.840e-3553.72S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835Z6C7_9STRA1.600e-3456.56S-adenosyl-L-methionine-dependent methyltransferas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:1446165..1446545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161135|e_gw1.16.152.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558
EC2.1.1.37
DescriptionC-5 cytosine-specific DNA methylase
COG categoryH
Max annot lvl28211|Alphaproteobacteria
EggNOG OGsCOG0270@1|root,COG0270@2|Bacteria,1MV9H@1224|Proteobacteria,2U0FE@28211|Alphaproteobacteria,4BSC3@82117|unclassified Alphaproteobacteria
Evalue1.79e-11
Seed ortholog1333998.M2A_3284
Hectar predicted targeting categoryother localisation
TranscriptId161457
TrackFilteredModels1
ProteinId161135
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161135gene_3112Tribonema minus UTEX_B_3156 geneContig_16 1446165..1446545 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3112_1exon_3112_1Tribonema minus UTEX_B_3156 exonContig_16 1446165..1446545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3112CDS_3112Tribonema minus UTEX_B_3156 CDSContig_16 1446165..1446545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161135Trimin1|161135|e_gw1.16.152.1Tribonema minus UTEX_B_3156 polypeptideContig_16 1446165..1446545 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3112 ID=mRNA_3112|Name=jgi.p|Trimin1|161135|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_16:1446165..1446545- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCTCCGCACGCGGCGGTGACGGCGCTCGTCGACCTGTTCTGCGG
CATCGGGGGCTTCAGCGAGGGCGCGAGGCTCGCCGGAGCGGAGGTCGCGC
TGGCCGTCGACAGCTGGCGCGCTGCCCTCGACGTGCACGCGTCCCGCCAC
CCCGACGCGGAGCACTGGTGCGAGGAGCTCGGGGGGGACGTGGCGGAGTT
CGCGAGGCGCGTCCGCGCGGCGGTCCCCGTCGGCTGCAGGCTCCACCTGC
ACGGTTCTCCCCCCTGTCAGCAGCTCAGCAGCCTCAACCCGGGCGGCGAC
AGGGAGGAGGGCGCGCGGCTGGTGACGTGGTACCTCGACGTCGTCGACGC
GCTGCGGCCGGACTCCTGGACGATGGAGCAG
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protein sequence of jgi.p|Trimin1|161135

>Trimin1|161135|e_gw1.16.152.1 ID=Trimin1|161135|e_gw1.16.152.1|Name=jgi.p|Trimin1|161135|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
MSPPHAAVTALVDLFCGIGGFSEGARLAGAEVALAVDSWRAALDVHASRH
PDAEHWCEELGGDVAEFARRVRAAVPVGCRLHLHGSPPCQQLSSLNPGGD
REEGARLVTWYLDVVDALRPDSWTMEQ
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mRNA from alignment at Contig_16:1446165..1446545-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3112 ID=mRNA_3112|Name=jgi.p|Trimin1|161135|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_16:1446165..1446545- (Tribonema minus UTEX_B_3156 )
ATGTCGCCTCCGCACGCGGCGGTGACGGCGCTCGTCGACCTGTTCTGCGG CATCGGGGGCTTCAGCGAGGGCGCGAGGCTCGCCGGAGCGGAGGTCGCGC TGGCCGTCGACAGCTGGCGCGCTGCCCTCGACGTGCACGCGTCCCGCCAC CCCGACGCGGAGCACTGGTGCGAGGAGCTCGGGGGGGACGTGGCGGAGTT CGCGAGGCGCGTCCGCGCGGCGGTCCCCGTCGGCTGCAGGCTCCACCTGC ACGGTTCTCCCCCCTGTCAGCAGCTCAGCAGCCTCAACCCGGGCGGCGAC AGGGAGGAGGGCGCGCGGCTGGTGACGTGGTACCTCGACGTCGTCGACGC GCTGCGGCCGGACTCCTGGACGATGGAGCAG
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Coding sequence (CDS) from alignment at Contig_16:1446165..1446545-

>mRNA_3112 ID=mRNA_3112|Name=jgi.p|Trimin1|161135|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_16:1446165..1446545- (Tribonema minus UTEX_B_3156 )
ATGTCGCCTCCGCACGCGGCGGTGACGGCGCTCGTCGACCTGTTCTGCGG
CATCGGGGGCTTCAGCGAGGGCGCGAGGCTCGCCGGAGCGGAGGTCGCGC
TGGCCGTCGACAGCTGGCGCGCTGCCCTCGACGTGCACGCGTCCCGCCAC
CCCGACGCGGAGCACTGGTGCGAGGAGCTCGGGGGGGACGTGGCGGAGTT
CGCGAGGCGCGTCCGCGCGGCGGTCCCCGTCGGCTGCAGGCTCCACCTGC
ACGGTTCTCCCCCCTGTCAGCAGCTCAGCAGCCTCAACCCGGGCGGCGAC
AGGGAGGAGGGCGCGCGGCTGGTGACGTGGTACCTCGACGTCGTCGACGC
GCTGCGGCCGGACTCCTGGACGATGGAGCAG
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